Nostoc linckia: NIES25_24000
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Entry
NIES25_24000 CDS
T10227
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nlk Nostoc linckia
Pathway
nlk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nlk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES25_24000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlk03021
]
NIES25_24000
03400 DNA repair and recombination proteins [BR:
nlk03400
]
NIES25_24000
Enzymes [BR:
nlk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES25_24000
Transcription machinery [BR:
nlk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES25_24000
DNA repair and recombination proteins [BR:
nlk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES25_24000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
BAY75951
LinkDB
All DBs
Position
2842773..2844650
Genome browser
AA seq
625 aa
AA seq
DB search
MRPAQTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKG
IPSYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLSEDQWLEIEDQIYSEDSQ
LQGVEVGIGAEALLRLLADINLEQEAESLREEIGNAKGQKRAKLIKRLRVIDNFIATGSK
PEWMVMAVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRNDPSVWDVLE
EVIEGHPVLLNRAPTLHRLGIQSFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGKPIITPSQDMVLGAYYLTAENPGATKGAGKYFASLDD
VIMAFQQEEIDLHAYIFVRFDGELESDQPDTEPLEVQENEDGSRTLKYKFRRVREDAQGN
LLSQYIRTTPGRVIYNKAIQEALAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagacctgcccaaactaatcagtttgactacgtaaaaatcggcttagcatcaccagaa
cgtattcgccagtggggcgagagaactttgcccaatggtcaggtagtcggtgaagttacc
aagccagaaacaattaattatcggactctcaagccagagatggatggcttattctgcgag
cgcatctttgggccggcgaaagattgggaatgtcattgtggcaagtataaaagagttcgt
cacagaggtattgtctgcgagcgctgtggggtagaagtcactgagtcacgggtgcgtcgt
caccggatgggctatattaaacttgccgcaccagtggctcacgtttggtatctcaaaggc
attcctagctatatttccattctgctggatatgcccttgcgggatgtagagcaaattgtc
tatttcaactcttatgttgtcttaagtccaggcaatgccgaaactttaacttacaaacag
ctactaagtgaagaccagtggctggaaattgaagaccaaatttatagtgaagattctcag
ctacaaggcgtagaagtaggcattggtgccgaagcactgctgcgcttgcttgcggatatc
aatttagagcaagaagctgaaagcctgcgggaagaaattggcaacgcaaaaggacagaag
cgagccaagttaattaaacgcctgcgggtaattgacaacttcatcgctactggttccaaa
ccagagtggatggttatggcagttattccggtgattcccccggacttgcgcccaatggtg
cagctagatggcggacgctttgccactagtgatttgaacgatttgtataggcgggtaatt
aaccggaataatcgtttggcacggctgcaagaaattttggcgccagagattattgtgcgg
aacgaaaagcggatgctgcaagaagcggtagatgctttgattgacaatggtcgtcgcgga
cggactgtggtgggggcaaataaccgaccgctgaaatctttgtccgacattattgaaggt
aagcaaggacgttttagacaaaacttgttaggtaaacgagttgactactctggacgttcg
gtaattgtggtcgggccaaagctgaaaattcaccagtgcggtttgcctagagaaatggca
attgagctatttcaaccatttgtgattaatcgcctgattcgcagtggcatggtgaataac
attaaggctgcgaaaaagctgatatcgcgtaatgaccctagtgtttgggatgtactcgaa
gaagtaattgaaggacacccagtgctacttaaccgggcgccaacgttgcaccgtttgggt
attcagtcttttgaaccaattttggtggaaggaagagcaattcagctgcatcctttggtg
tgtccggcatttaacgccgactttgatggcgaccaaatggcggtacacgtaccgctgtcg
ttagaaagtcaggctgaggcgcggttgttgatgttggcttctaacaatattttgtcacca
gccacaggtaaaccaattatcacgcctagccaagacatggtattgggagcatattactta
acagcagaaaatcctggtgctaccaaaggcgcaggcaagtattttgcttccttagatgac
gtaattatggctttccagcaagaggaaatcgacttgcacgcctatatctttgtgcggttt
gatggcgaactcgaatcagaccaaccggatacagaacctcttgaggtgcaagaaaacgaa
gatggtagccggacattaaagtataagttccgcagagtcagagaagacgctcaaggaaat
ctcctttcacagtatatacgtacaacgcctggtcgagttatttacaataaagcgattcag
gaagcactagcaagttag
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