Neodiprion lecontei (redheaded pine sawfly): 107224818
Help
Entry
107224818 CDS
T09006
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107224818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlo03019
]
107224818
Messenger RNA biogenesis [BR:
nlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107224818
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107224818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
107224818
NCBI-ProteinID:
XP_015520502
UniProt:
A0A6J0C1V0
LinkDB
All DBs
Position
2:5780654..5795065
Genome browser
AA seq
2404 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLNKKNFRESAQEISVLVQWKGLEADRHLLRCLFSHVNFSTG
EQPEPNAKDYYQAQLLTQECINLLSKPSFISNLCYAIDRPLHQQKSLNPSSKFFLNLRKV
LKLTSVQEVAFAIALLHSENPDIQTLALEHIKKQLPELIKNYINSEISNKHHEGGLHDSS
PEVLHLILSQAFHEPNQFGLPIEAKEKFLKNLRRDFPRELVPVVLAPLLYPGDGEIPQAA
IELNMASNPMGFPFQDGNALVEMIMELGYGFTSSVDECRSALAGLGAREITPTAAARVLS
LMARTCSGLDDAGGLQSFWGGSGGNQDSSKEKSSDGSTPTTWNVEVFIQTLKDLQSTLSW
NEIIVKLDHTDFIIKDRQGLNLLITGLRLGLQHLGYPLDMFPVELFYRHWDNVEGQFSLV
QQVLKNPDIFCFADYPYHSVTVDVLKAAPEGDSKEAGTWRSLNVVELLLHMAERGLYGAV
QETFKWPIQHCPDVLVLALLQINPPLTILRQELLSTLMPIFLGNHPNSAVILHHAWHANN
IPIKPIIMHAMAEWYLRGEYDQTRLSRILDVAQDLKALSMLLNAQSFPFVIDLACLASRR
EYLKLEKWLTDKIRDHGELFVAACVKFLQRRCPHIMGPTMKEDPSTPKATQLPQETLNTI
LACLQVCAGNVSQDCSDAIMTMVQNCNLMLSKASLSRPPPVIRHRALEPFNPATLGGQLF
SSSQVDPLGNLSSSLASMGLSSSLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFP
LMPLSAQLHAGPVGTQGPSVVPGGTTIAGLSRLGPPSGIEKARLPETSNLFPDMSQNVSK
EIEDEANSYFQRIYNHPPHPTLSIDEVLEMLKKFQDSGSKRERDVFNCMLRNLFEEYRFF
PQYPDKELHITAQLFGGIIERGLVNTYVALGLALRCVLDALRKPEASKMYYFGIAALDRF
KSRLKEYQKYCEHVRAIQHFSEFPPHLIEYVEYGLQGQEPPTRPQGQVLPKSIAAMLAPA
TIPYKTITTTTVTTTTTQAKPSTTPTTSLSARPSIANATNIDTLLVATDKEEKITAPPES
LQDKTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLD
CLKVPDVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNNPIFHID
IDLKSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPD
LKLNLKFEIEVLCKNLSIDVSELKPAIYLKDPEKLRNLEYQLSHPNKKPEVAANPLPPQP
PAEELVRPTTTGTVVPQQAPPVNTTPSLPTSPPEPRFNYMDISVTGIASQHITINNQLPL
FQAHPHLKQFVRSAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEIRMRTAAR
HMVRNLTAGMAMITCREQVLTSISTNLKQSFVAALMGTTPQQKELAEQAASIVAADNMEL
ACAFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRLKVGG
VTPQQMAVYEEFARNIPGFLPLSERDTQALFMPKPVTEPAATAFAANPAVAVATPQQVAA
YAAAVNNDEVGAMLEKLATEVDLLLAAMGPGVPPPQHAALHALLDSIILTRRSRDTGAAM
ALLKKAVEGLLDGPTISTGVNDGEIMLRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLT
ECREEFRYNFEAVDYLIRSHLLNLPQFDYALAQAMDAGAAMATAFAMQLVQLYLIDERQT
THVTESDLFNTIEILARMAHHRAPPEGISIFRLTSLIESLRANHDPAVLADRAPAGPTAH
IHSGILQVRTRDFDDPPGLMEKTEYLLREWVSMHHNPTHARDPTKAFGMFVHQMNIHGIL
KTDDLITRFFKLSTQMCVDLCYRALGEPNAAPSVVRAKCFHTLDAFVRLVALLVKHSGDT
ANTHTKINLLNKVLGIVAGVLLQDHEMRGTDFQQLPYHRIFVMLFLELCAPEPVLEAVNY
QVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFK
YLAPYLRNAELAKPVTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLIL
SAFPRNMRLPDPFTPNLKVDMLQEIAHAPRVLSNFASMIQPLSFKKELDSYLKARAPVTF
LSELRSNLQVSQEAGMRYNIQLMNALVLYVGTQAIAFIRSKGHTPNMSTIAHAAHMDIFQ
NLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERL
IVNRPHPWGLLITFIELIKNPTYNFWKHEFVHCAPEIEKLFESVARSCMVQKQVQPPPEP
EIPE
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcaaatttg
aacaagaaaaattttcgagaaagcgctcaggaaatatcagttttggtgcagtggaagggt
ctggaggcggacagacacttgctgcgctgtttgttctcacatgtcaacttttcaacggga
gagcagccagagcccaacgcaaaagattattatcaagctcagttgctcacccaagagtgc
attaatcttctcagcaagccgtccttcatatcaaacctctgttacgccattgatcgcccc
ttacatcaacaaaaaagcttaaatccatcatcaaaattttttctcaatcttcgcaaggtt
ctgaaattgacatctgtacaagaagttgccttcgcgatagcgttgttgcattctgaaaat
ccagatatccagacgttagcattggaacacattaaaaaacagctacctgaattgataaag
aattacataaactcggaaataagcaataaacaccacgaaggaggtcttcacgattcgtca
cctgaggttctacatctcatactgtcgcaggcatttcacgaacccaaccagtttggcctg
cctatcgaagcaaaggaaaaatttctcaagaatttaaggcgtgattttccccgtgagctg
gtaccggtggtgctagcaccactcttgtatccaggcgacggggaaattccgcaagcagca
attgaattaaacatggcttccaatccaatgggatttccctttcaggatggaaatgctttg
gtcgagatgattatggaactcggatatgggttcaccagtagcgttgacgaatgccgctcc
gcccttgctggactgggggcccgagaaattacaccaaccgcagctgctcgggtgttatcc
ctcatggctcgtacatgttccggtcttgatgatgctggtggtttacagtcattctgggga
ggttccggtggcaatcaagattccagtaaagagaaatcttctgacggcagtacacctact
acatggaacgtcgaagtgttcattcagactctgaaagatcttcaatctactttatcatgg
aatgagatcatagttaaacttgaccacactgattttataatcaaggacagacaaggctta
aacctgctaataacaggcctgcgtctaggtcttcagcatctaggatatcctctggatatg
ttccctgttgagttattttaccgacattgggataatgtagaaggtcaattctcattggta
cagcaagttctgaaaaatccggacatattttgttttgctgattacccgtaccattcggta
acagttgatgttctcaaagctgcaccagaaggcgacagcaaggaagccggaacctggcga
tcactgaatgtagtcgaacttctgcttcacatggctgaacgaggtttatacggcgcagtt
caggaaacattcaaatggcctattcaacattgtccggacgttctcgtcctggccctactt
cagatcaatcccccactcacgatactccggcaggaattgctcagcactttgatgccgatt
ttccttggcaatcatccgaattccgctgttattttacaccatgcttggcacgccaacaat
attccaatcaagccgataataatgcatgccatggccgagtggtatttgcgtggggaatat
gatcaaacaaggctatctcgaatcctagatgtggctcaggatttgaaggctctttcgatg
cttctgaacgcccaatcttttccttttgttatcgatctggcctgtctagcctcacgaaga
gaatatttgaaactggaaaagtggcttacagataagattagagatcacggagaattgttt
gttgctgcttgcgtaaaattcctacaacgaagatgtccgcacattatggggcccactatg
aaagaagacccttcaactccgaaggctactcaacttcctcaggaaacactcaataccatt
cttgcttgcctgcaagtctgcgctggaaatgtgtctcaagattgttccgatgcgattatg
acaatggttcagaactgcaatctaatgcttagtaaagcaagcctaagcagaccacctcct
gtcattagacacagagcgcttgaaccgttcaatcctgctactttaggaggacagctcttt
tcgtcatcgcaagttgatccattgggaaatctcagctcaagtttagcttctatgggcttg
agctctagtttgggacctcctagcagttctgcttttaatcttcctggggcccttggtcct
ttggtttctgcacctggttcaccctcacgcttaatgggtccatcaccgagcccattccct
ttgatgccgctttccgcccagcttcacgcagggcccgttggaacgcaaggaccatcagtt
gtaccgggtggtacaacgatagcaggattaagccgtcttggtccaccaagtggtattgaa
aaggctagattgccagagacttcgaatttgtttcctgatatgtcgcagaatgtatctaaa
gaaattgaagacgaagcgaacagctattttcaacgcatatacaatcaccctccacatccc
acattgtcgattgacgaagtacttgaaatgttgaaaaaatttcaagattccggtagcaaa
agagagcgtgatgtgttcaactgcatgttgcgcaatttgtttgaagagtaccgtttcttt
ccgcaatatcctgataaggaattgcatataacagctcaattgtttggaggtattattgag
agagggcttgttaacacttatgtcgccttgggattggcgttacgctgtgttcttgacgct
ttgagaaaaccggaggctagtaaaatgtattattttggaatcgctgcattggaccgcttc
aaaagtcggttaaaggaatatcagaagtattgcgaacatgtcagggctatccaacacttc
agtgaattcccaccacatcttatcgagtatgtcgaatatggcctccagggacaagaacct
cccaccagacctcagggtcaagtacttccaaagtcaatagctgccatgctagcaccagct
actattccttacaaaactatcactacaacgactgttacaacaactactacccaagccaaa
ccatctacaactcccactacgtcgctctctgccaggccatcaattgcaaatgcgaccaac
atagacacattgcttgttgccacggataaggaggagaagattacagcaccaccggaaagt
ttgcaagataaaactgcatttatattcaataatttgagtcagcttaatctgcaacagaaa
tgtgatgaaattcgagagatagttaccgaagagtactggccatggatggctcagtattta
gttatgaaacgtgctagcattgaattgaatttccatgccctttattccaactttcttgac
tgtcttaaagtacccgatgtgaataaaatggtcaccagagaaactttccgaaacatcaag
gtactgctacgaagcgacaaaggaatagcaaacttttctgaccgctctctattgaagaac
ttgggtcattggctgggaatgctgacattaggaagaaacaatccaatcttccatattgat
atagatttgaaaagcttacttgtcgaggcgtatcacaaaggtcaacaagaactcttgtat
gttgtgccattcgtagctaaagtattggaaagctgtgcaaaaagccgtgtctttcgtcct
cccaatccctggactatggcaataatgaatgttttggctgagttacatcaggaacctgat
ctaaaactgaatctgaaatttgaaattgaggtgctctgcaagaatctgagtatcgacgta
tccgaattgaagccagccatctatttgaaagatcccgaaaaactgagaaacttggaatac
caattatcacacccgaataagaaaccagaagtcgctgcaaatccgctcccaccacagcct
cctgctgaggaacttgtcagaccaacaacaactggaactgtagtcccacaacaggcacct
cctgtaaatacaacaccttcattgccgactagtccacccgaaccacgattcaattacatg
gatatatcagtgactggtattgcttcacagcacatcactatcaacaaccagctgccactt
ttccaagcacacccacacctcaaacaatttgtgcgttccgctgttgaacgagctattcaa
gagtggattcaccctgtcgtagatagatcaataaaaatagcattgacaacaagtgaacaa
attgtcagaaaagattttgcactcgaccccgaagagatcaggatgcgtactgctgcccgt
catatggtgcgcaatctcactgctggaatggccatgataacgtgccgagaacaggtactc
acttcaatcagcacaaacctgaagcaatcatttgtagctgcactgatgggaactactcca
caacaaaaggagctagctgaacaagcggcgagtatagtggctgctgataacatggaactt
gcgtgcgcatttgtacagaaaacagcgattgaaaaagctattcctgagatggataagaga
ctactaaatgagatagaactacgtaagattgctagacaagaaggaaggaggtactgtgat
cccttagctaaatatcaggcagagagaatgcctgaacaaataagacttaaagtcggagga
gttactccacaacaaatggctgtttatgaggaattcgcaaggaacattccagggtttcta
cctctttctgaacgtgacactcaagctctctttatgcctaagccggtcactgaacctgct
gctacagcattcgcggcaaatccggcagttgcagttgctacacctcagcaagtcgcagca
tatgcagctgctgttaacaatgacgaagttggtgccatgttagaaaaacttgccacagaa
gtagatctacttttggcagctatgggtccaggtgttccgccaccacaacacgctgcgcta
catgcacttctcgattctatcatccttaccagaagatccagggacactggtgctgctatg
gcgctattgaaaaaggctgtagaaggattgctagatggtcccaccatttcaactggtgtt
aatgatggagaaataatgctgcgatacagggaattacatcttcgtatccttaagtgcctt
caagatccacgagcttatggcatgcagtggacaaacaaacatgtaactcgatgtttaacg
gaatgcagagaagagttccgttacaattttgaagctgtcgattacttgataagatctcac
ttgttgaacctaccgcaatttgattacgctctggctcaggcaatggatgctggtgctgcc
atggctactgcttttgctatgcaactagtgcagctctatctaattgatgagagacaaact
actcatgttacggaatctgacttattcaatacaattgaaattctagctagaatggcacat
catcgagcaccacctgaagggatttcaatattcaggcttacgagtttgatagaatcatta
cgggctaatcatgacccagctgtactggcagacagagccccagctggaccaactgctcat
attcactcagggattctccaggtgagaactcgggatttcgacgatcctcctggactgatg
gaaaagaccgaatacttgttacgtgaatgggtatccatgcaccacaatccaacgcacgcc
cgtgatccaacaaaagcattcggaatgtttgtccaccagatgaatattcacggaatatta
aaaactgacgatctcattacacgattcttcaagctcagtacacaaatgtgcgttgatctc
tgctacagagcactgggtgaaccaaatgctgctccttctgtggtgcgtgcgaagtgcttc
catacattggatgcctttgttcgtcttgttgcgcttttggtaaagcattcaggggacact
gcaaatacgcacactaaaatcaacctcctgaacaaggttctgggcattgtcgccggtgtt
cttctgcaagatcatgaaatgcgcggaacggactttcaacagctaccttatcatcgaata
tttgttatgctgttccttgagctgtgtgctcccgaacctgtgcttgaggccgttaattac
caagtactgactgccttctgccacacgctgcacatattacgtccagcaaaggcctcaggc
ttttgttacgcttggttggagctggtttcgcaccgagtatttattggtcgtatgctcgct
attactccacaacaaaaatgctggggcatgtacgctcagttgctcattgatctcttcaag
tatcttgcaccatatctgcgcaatgctgagctagcaaagccagtaactctcttatacaag
gggacgctgcgagtactgttggttttattacatgacttcccagaatttttatgcgactat
cattacggattctgcgatgtgatacccccaaattgtattcaaatgagaaacctcattctc
agtgctttcccgagaaatatgcgcctccccgatccttttaccccgaatttgaaagtcgac
atgctgcaagaaatcgcccatgcaccaagagttctatcgaactttgcctctatgatacaa
ccgcttagtttcaagaaagaattggattcatacttgaaagccagagcccctgttactttc
ctttcagaacttcgcagtaacttgcaggtttcacaggaggctggaatgcgctacaatatt
caattgatgaacgcccttgttctgtatgtcgggacacaggctatagcattcattcgtagc
aaaggacatactcccaacatgtcgacaattgctcatgccgcacacatggatatattccaa
aatctagctgttgatctcgatacagaagggcgttacttattcctaaatgcaattgcaaat
cagttgcgatatcccaacagtcatacgcattatttcagttgtaccttgttgtacctattc
gctgaagctaacactgaagctattcaagaacaaataacacgagtccttcttgaaaggctg
attgtcaacagaccacatccctggggacttctcattacctttattgaactcattaaaaat
cctacctacaacttctggaagcatgagtttgtccactgtgcaccagaaatcgaaaaatta
ttcgaatcagtggctcgatcgtgtatggtacagaaacaggtccagccacctccagaaccg
gagatcccagagtga
DBGET
integrated database retrieval system
