Nilaparvata lugens (brown planthopper): 111046943
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Entry
111046943 CDS
T07276
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nlu
Nilaparvata lugens (brown planthopper)
Pathway
nlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111046943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlu03019
]
111046943
Messenger RNA biogenesis [BR:
nlu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111046943
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111046943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
111046943
NCBI-ProteinID:
XP_039287191
LinkDB
All DBs
Position
6:complement(53229395..53310345)
Genome browser
AA seq
2354 aa
AA seq
DB search
MNLDSLSFTLSQISYLVTNLSKKNYKSSVQEISQLTSLYGCEADRHLLRCLLSAVEWSGS
AHAQWSSGPTPQVQLLAQECAALLAKPALVSNLCFAIDRPLYHQKTLKPSNQLLPTLSKV
LKLTPVQEVVFGLALLHSSNPETLIFATQFVRQKLPDLIRVYINSETGSTTLPDGGLHDT
TPEVLHLILSSVLFASSEHFGVTTEVKEVFLKNLRRDFPRELVPVVLAPLLYPSSTDLPM
DKLSQDSSSMANTMHEPQVSLADLLLETGYSLCASVETCRQHLLSLGGGADATQLTPATV
ARCLAMMVRTHTGLDQAGYWHGAKDATGVQVGGDKAAVDGPPATWAIDVFVTTVKDLVPN
LQWTEVMIELDHADFIVKDRQGLNLIVSALRLGIQTSPNVSFHWDKIFTDQVYKPWKHPD
SQLSLIQQCLRNPDIFCFADNIQQTFVIDALKAPPENDNKEIASWRCLSLVETLLCLSER
GLYVQVQDIMKFPIQHCPDVLVLGLIHVSGPMNVLRTELLTSLIPLFLGSHPNSNTILHA
AWSAKNVAVKPVVMHAMAEWYLLGDYDQVRLSRILEIAQDLKVLYALKFLQSLPFIIDLA
CLASRREYLKLDKWLGDKIREHGEPFVAACVKFLQRRCPQIVGGIVKDENLPKAAQLPQE
TITTMLLCLQSCAGSIQQELADAIHTMVANCSLQLSKQRQPPPGVLRAHRAALDPTFSQF
AQPQVDSLSLSSTLAGMSLGGGGGGGGGSPSRLLSGPLPPSPGPPFLTPPLAPLPPSIMA
AVQRLPPPHPTPHPTPQPPQHIDKSKLGGEIANLFPDPPTTVSKEVEDEANSYFQRIYNH
PPHPTLSIDEVLDMLKAFQESQNKRERDVYHCMLRNLFEEYRFFPQYPEKELHTTAQLFG
GIIDHGLVTNYVMLGLALRLVLDALRKPHGTKMYYFGIAALDRFKSKLKEYQKYCEHVVA
IPHFKEFPGHLIEYLEYGLQGQEPPNRPQGPVLPAAIMQALNASTYKATPTTITTTITSC
SVVTKTTTTTSVMGGRPSIANATNIDTLLVATEKDEKMIVPPEAMQDKVAFIFNNLSQLN
LPEKCDELRDLVTEEFFPWISQYLVMKRASIELNFHTLYSNFLDVLKINDVKKMVLVETY
RNIRVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNRPILQGDLDLKSLLAEAYSKGQQ
ELLYVVPFVAKVLESCCKSRIFGPPNPWTMSIMNVLSELHSEPGLKLNLKFEIEVLCKNL
SLDVAELTPGIFLKDPENLKNLEHQLSSPKNGGSGGGGKVDASPVPQPQAYIAAPPAAAS
TPVPVPAAPAPQPQPQLQQHVVVTPMPVVGGGVEEVVLASSPVVGGVGVGGAATPTPTPA
TPQPAAPAPLPPLPPPPPPPPEPRFSYAQLNVNSIAQLAAHVTINTQLALFQAHPALKQL
VRQAVERSVSEWIHPVVDRSVKIALTTAEHIVKKDFALDPEETRMRLAAHHMVRHLTAGM
AMITCRDQLMIAISNNLKQLLANALLGAPAQKELIEQAATISAQDNIELGCAFIQKTAVE
KALSEVDKHLMPEFERRKMARQEGRRYCDSATLTYQAERMPEQIRLKVGGASPQQMAVYE
AFARNIPGFQPLTERELQLFMPQTYNATDDMSVLYDKLISDFECYMQTMLASSSTSMQIG
PIHSLTECLVMTRRTRDTMTAVTLIQKAVEGLLDGSAAGNDPEAIVRYRELHLRVLKTLQ
DPRAYGIQWINKQVTRCLMESREEYRYNVEAVDMLIRQQLVNVAQYDQHIALSMESGINY
VAVAFAMQLVQHYLVDDRTNQYVTEQDLCNTIDVLQRIALYHRQPPEGLATLIEVLRSGH
DPNYIGDRAPGGPTAQIHSGILQVRARDYEDPPGLTEKTEFLLREWVTIYHSNTKDPQKA
FSCFVHQMNLHGILKTDDLITRFFRLSTQMVVELCYRLLPDQSSSQANTRNKIFHTLDAF
VKLIALLVKHSGDSTNTATKINLLNKVLGIVAGVLLQDHEGHQLEFQQLPYHRLFIMLFL
ELNSPEPILEAISFQVLAAFCHTLHILRPGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPN
CIQMRNLILSAFPRNMRLPDPFTPNLKVDMLSEISLAPRVLTSYASIIQPATFKKDLDSY
LKARAPVTFLSELRSNLQVSNEPGMRYNIPLMNALVLHVGSEAIGFIRKKGLAPNMSTIA
HSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQ
ITRVLLERLIVNRPHPWGLLITFIELIKNPNYKFWNHEFVHCAPEIEKLFESVARSCMVP
KQVQAHAENELPEL
NT seq
7065 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaataagttatttggttacgaattta
tcgaagaaaaattacaaatccagcgtacaggaaatatctcaattgaccagcctttacggt
tgtgaagcagaccggcatctgttacgttgcctgctgtcggcggtggagtggagtggcagt
gcgcatgcgcagtggtcctcaggtcctactcctcaggtgcagctgttggctcaggagtgc
gccgctctgctcgccaagccggccctcgtctccaatctctgttttgccatcgatcgaccg
ctctaccatcaaaagaccttaaaaccgtcaaatcaattgcttcctacactaagcaaagtt
ctcaaactcacgcctgttcaagaagtcgtatttggccttgccttactgcactcgtcaaat
ccggaaactcttatctttgccacacagtttgttcgtcaaaaattaccagatcttattcgg
gtttatataaattctgaaactggaagtacaactttaccggacggtggactccacgacaca
acacctgaagtactccatttgatcctgagcagtgtgctgttcgcatccagtgagcatttt
ggtgttacaacggaagtgaaagaagtgtttctgaagaacttgcgaagggattttccgcga
gaactggtgccggtggtactcgcgccattgctctacccttccagcactgacctgcccatg
gacaaattgagtcaagactcatcatcaatggctaatacaatgcacgagccgcaagtatca
cttgccgacctgctgctagagactggctactcgttgtgcgcaagcgtggagacatgccgc
cagcacctgttgtccctgggtggtggtgcggatgccacccagctgacccccgccacagtg
gcgcgctgcctggcgatgatggtgcgaactcacacgggcctcgaccaggccggctactgg
cacggcgccaaggatgcgaccggcgtccaagtgggcggcgacaaggcggctgttgacggg
ccccccgccacctgggcgatcgacgtctttgttacgactgtcaaggacttggtaccgaac
ctacaatggacagaagtaatgattgaactggatcacgccgattttatagtgaaggacagg
cagggtctgaatctaattgtaagtgccctgaggttgggcattcaaacatcgcccaatgtc
tcctttcactgggacaaaatattcaccgatcaagtctacaaaccgtggaagcatcccgac
tcgcagctgtcgctcattcagcagtgcttgagaaacccggacattttctgcttcgctgat
aacattcagcagacgtttgtaatcgacgccttgaaagcacctcccgaaaatgacaacaaa
gaaattgcctcatggcgctgcctgagcctggtggagacactgctgtgtctctcggaacgc
ggcctctatgtgcaggtgcaggacataatgaagtttccgatccaacactgccccgatgtg
ctcgttctgggactcatccacgtgtctgggcccatgaatgtgctacgcacagaactgctc
acctcgctcataccgctctttctcggcagtcatcccaattccaatactattctgcacgct
gcctggagcgccaagaatgtggctgtgaaaccagtggttatgcatgcgatggcagaatgg
tatctactgggtgactacgatcaagtcagactttctcgaattttggaaattgcacaagac
ctcaaggtactgtacgctttaaaatttctccaatcacttcctttcattatcgatctggct
tgtctggcttcgaggagagagtatttgaagctggataagtggctcggcgataagatacgg
gaacatggagagccattcgttgccgcctgtgtcaaattcttgcagagacgctgtccgcaa
atagtgggtggaattgtcaaagatgaaaatcttccaaaagcggcacaattgccacaggag
actataacaacaatgctactctgccttcagagttgtgccgggagcattcagcaggagctg
gccgatgcgatccacaccatggtggccaactgcagtctgcagctgagcaagcagcgtcaa
cctccacctggagtgctgcgcgcgcatagggccgcccttgatcccaccttctcgcagttt
gcacagccgcaggtggactcgctaagcttgagctcgacgctggccggcatgagtctggga
ggtggaggtggcggaggcggtggttccccctcccgtctgctgagtggccccctgcccccc
tcaccggggccgccattcctcacgccccctctggcccctctgccgccttccatcatggcc
gccgtgcagcggctgcctccgcctcaccccacgccccacccaaccccgcagccgccacag
catattgacaagtccaagttgggaggtgagatcgccaacctgtttccggacccgccgacc
acggtctcgaaggaggtggaggacgaggcgaacagctacttccagcgaatctacaaccac
ccgccccaccccaccctctccatcgacgaggtcctcgacatgctcaaggcgttccaggag
tcgcagaacaaacgcgaacgggatgtttaccattgcatgttgagaaatctatttgaagag
taccgcttctttccacaatacccagagaaagagctgcacaccaccgcacaactctttggc
ggaatcatagatcatggccttgttactaactacgtaatgttgggcctggctttgcgtctt
gtgctggatgcgctgcgcaaacctcacggcacgaagatgtactactttggaatagccgct
ctcgaccgattcaagtccaagctcaaggaataccagaagtactgcgaacatgtcgttgcc
ataccgcacttcaaggagtttcctggccatttgattgagtatttggagtacggcctgcag
ggccaggagccccccaatcgaccacagggtcctgtgctgcctgcggccataatgcaggcc
ctgaatgccagcacctataaggccacgcccaccacaatcaccacaactattacgtcatgc
tctgttgttacaaagaccaccaccactacatctgttatgggcggacgaccttctattgca
aatgcaactaacatcgataccctattggtggccactgaaaaagatgagaagatgattgta
cctcccgaagcaatgcaagataaggttgcatttatattcaacaacctcagtcaactcaat
cttcctgagaagtgcgatgaattgcgtgatctagtcacagaggagttctttccatggatc
tcccagtatctggttatgaagagagccagcatagaactgaactttcacacactctactcc
aattttcttgatgtcttgaaaataaacgatgtcaagaaaatggtgcttgttgaaacctac
agaaacattagagtgttgctgcgtagcgacaaagggatagcgaacttctctgaccggtcg
ctgctgaaaaacctgggccactggctgggcatgctgaccctgggccgcaacagacccata
ctgcagggtgaccttgacctcaagtcgctgctggccgaggcctacagcaagggccagcag
gagctgctctatgtcgtgccgttcgtcgccaaggtccttgagtcctgctgcaagagtcgg
atttttggtcctccaaacccttggacaatgtccataatgaacgtgctttcagaactgcac
tcagaacccggcttgaagctcaaccttaaattcgaaatcgaagtattgtgcaagaacttg
tcgctggatgtagctgagctaacaccgggcatattcctgaaggatccggagaacctgaag
aatctggagcaccagctgtcgtcgccgaagaacggaggcagtggtgggggcggcaaagtg
gacgcatcacccgtgccgcagccgcaggcttacattgcggcgccgccagccgcagcctcc
acccctgtgccggtgcctgcggcccccgcaccacagccgcagccgcagttgcaacagcat
gtggtggtgactccgatgccagtcgtgggaggaggagtggaagaggtggtgctggccagc
agtccagtggtggggggagtaggagtgggaggggcagccacgcccacccccactccggcc
acccctcagccggctgcccccgccccgctgccaccgctgcccccgccgccgcctccgccc
cccgagcccaggttcagctacgcacagctcaacgtcaacagcattgcacagcttgccgcc
catgtcaccataaacactcagctggccctgttccaagcacaccccgccctgaagcaacta
gtgcgtcaggcagtggagcgatcagtgagcgaatggatccatcccgttgtcgaccggtcg
gtgaagatagccctgaccacggccgagcacatcgtcaagaaggactttgccctcgacccg
gaggagacgcgcatgcgcctagctgcccaccacatggtgcgccatctcaccgccggcatg
gctatgatcacgtgtcgcgaccagctcatgatcgccatcagcaacaatctcaaacagttg
ttggccaatgcgctcttgggcgctccagcacagaaggaattgatcgagcaggcagccacc
atctcagcccaggacaacatcgagttgggttgcgccttcattcagaagacagccgtcgag
aaggctctatcagaagtcgacaaacaccttatgcctgaattcgagcgccggaagatggcc
cgccaggaaggcagacgctactgcgactcggccacactgacctaccaggcagagcgcatg
cccgagcagattcgtctgaaggtgggcggggcgtcgccgcagcagatggccgtctacgag
gcgtttgcgcgcaacatccccggcttccagccgctcaccgaacgcgagctgcaactcttc
atgccgcaaacttataacgcgacggacgatatgagcgtattgtacgacaaattgatttcc
gatttcgagtgctatatgcaaacaatgttggcgagttcgtcgaccagcatgcagattgga
ccgattcactcgctcaccgaatgtctggtgatgacacgccgcaccagagatacgatgaca
gctgtcacacttatccaaaaggcggtggaaggactgttggatggctcggctgccggcaac
gacccggaagcgatagttcgctacagagaactacatctgcgtgtactcaagacactgcag
gaccctcgtgcttacggcatccagtggatcaacaagcaggtgacccggtgcctgatggag
agccgcgaagagtatcgctacaacgtggaggcggtggacatgctgatcaggcagcagctg
gtgaatgtggcgcagtacgaccagcacattgcgctttcgatggagagtggcatcaactat
gtggcggtggcgttcgccatgcaactggtgcagcactatctggtcgacgaccgcaccaac
cagtatgtcaccgagcaggacctctgcaacactatcgatgtgctgcagcgcattgcgctc
taccatcgccagccgcctgagggattggcgacattgattgaggtgctgcgctctggccat
gatcccaactatattggtgaccgagcaccaggaggtcccactgcccaaatacactcgggc
attctacaagtcagggccagagactacgaagatccacccggcttgacagagaagacagag
tttctgctgagagagtgggtcaccatctaccattccaacaccaaggacccacagaaggca
ttcagctgctttgtccaccagatgaacctgcacggcatcctgaaaacggacgacctgatc
acgcgcttcttccgactgagcacccagatggtggtggagctgtgctatcgcctactgccc
gaccagagcagctcacaggccaacactcgcaacaagatattccacacactcgacgccttt
gtcaagctcattgcgctgctcgtcaagcactctggcgactccaccaacaccgctaccaag
attaatctcctcaacaaggtgttgggcatagtggcaggcgttctattgcaggaccacgag
ggccaccagttggaattccagcagctgccctatcaccgcctcttcatcatgctcttccta
gaactcaactcgcccgagcccattctagaggccatcagcttccaggtgctagccgccttc
tgccacacactacacatcctgcgtccaggcacgctgcgggtgctgcttgtcctgctgcac
gacttccccgagtttctctgcgactatcactatggcttctgtgacgtcataccgcccaat
tgtatacagatgcgcaacctaatcctgtcagcgttcccgcgcaacatgcgactgcccgac
ccgttcacacccaacctgaaggtggatatgctgtctgagatctcgttggcgccgcgtgtg
ctcaccagctatgcctccatcatccagccggccaccttcaagaaggacctcgactcctat
ctcaaggcacgcgcgcctgtcaccttcctctccgaactgcgcagtaacctgcaggtgtca
aacgagccaggcatgcgctacaacattcctctgatgaacgcactggtgttgcacgtgggc
tctgaggcgatcggcttcattcgcaagaagggtttggcacccaacatgtccaccatcgcc
cactcggcacacatggacatcttccagaatctcgccgtcgatttggacactgaagggcgc
tacctgttcttgaacgcaattgcgaaccagctgcgctacccgaacagtcacacacactac
ttcagttgcactctgctctacctgtttgccgaggccaacaccgaagccattcaggaacag
atcaccagagtccttctggagagactaattgtgaacaggccgcacccgtggggactgcta
atcacattcatcgaactaatcaaaaatcccaactacaagttttggaaccacgagtttgtt
cactgcgctcccgaaattgaaaagcttttcgagtcggttgcgcgatcctgtatggttcca
aaacaggtacaggcccatgccgaaaatgaacttcctgaattataa
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integrated database retrieval system
