Numida meleagris (helmeted guineafowl): 110407616
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Entry
110407616 CDS
T06015
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110407616 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmel03400
]
110407616 (LIG4)
Enzymes [BR:
nmel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110407616 (LIG4)
DNA repair and recombination proteins [BR:
nmel03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110407616 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
SKA1
Motif
Other DBs
NCBI-GeneID:
110407616
NCBI-ProteinID:
XP_021271139
LinkDB
All DBs
Position
1:137874824..137878818
Genome browser
AA seq
912 aa
AA seq
DB search
MASAPASQPSPKRTVASHVPFADLCSTLERMQTCKSRPEKTKYFKDFLDSWRKFHDALHQ
KDKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAVKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKRGRLTVEQVNELLDAITNNNAAKNKGLVKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHSVFKSDIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMINDQKLGHEALSKRYKILSNVFTPVTGRIHVVHKKSARTRKEVI
DALNEAIDNREEGIMVKDPTSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKYWKPYNRKDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
LDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKKKTVPKVKKVIGIAEQFKAPDLSNVNKV
SSVFEDVEFCVLTGTGRYSKSELESRIAECGGSVVQNPGPDTYCVIVGAENVRVKNIIAS
NKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTADTDVAQLK
EVFSRVKDNKKMPLDLIAELEERYSWNSCQLCIFRGNTIYVDYYAIVNEPSTKIHGTRLS
IRALELRFYGAKVVPLLEEGVSHVVVGEDRSRVKEMKALRRMFGKKFKIVSELWVTESVK
EGVPKNENQFLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgcgtcacagccttctccgaagagaacagtggcctcgcacgtgcct
tttgcggatctgtgttccaccctggagagaatgcagacgtgtaaatcgcgtccggagaaa
accaagtacttcaaggatttcttagattcctggaggaaattccacgatgctctccatcaa
aaagacaaagatgtcacagattctttctatcctgctatgcggcttattcttcctcagctg
gaaagggaaaggatggcatatggaattaaggaaaccatgcttgcaaagctgtacatcgaa
ctgcttaatttaccaaaagatggaaaggatgctgtgaagcttttaaattacagaacgccc
actggttcacgtggagatgctggagactttgcaatgattgcatactttgtgttaaaaccc
cggagccctaagcgaggcaggctgacagtagagcaggtcaatgaactgctggatgccatc
acaaacaacaatgctgctaaaaacaagggactggtgaagaaaagccttcttcagttaatt
acccagagcacagcgctcgagcaaaagtggctcatccggatgattataaaggatctaaaa
cttggtgttagtcaacaaactatattttcaatttttcatcccgatgctgctgaattacac
aacgtcacaacggatttggaaaaagtttgtaggcagctgcacgacccctctgtctcgctc
agtgatgtttctatcatgttattttctgcatttaaaccaatgctcgctgctattgctgat
gtccagcaaattgagaagcagatgaataaccaggtattctacatagaaactaaactggat
ggtgaacgtatgcagatgcacaaagatggtgatgtgtataaatatttttccagaaacggg
tttgactatactcagcagtttggtgcttccccccttgatggctcattaacaccatttatt
catagtgtatttaaaagcgacatacaaaattgcattcttgatggtgaaatgatggcttac
aatcccgaaacacaaacctttatgcaaaaaggaaacaaatttgacattaaaagaatggtg
gaggactctgatttgcagacctgcttctgtgtgttcgatgtattaatgattaatgatcag
aagttgggtcacgaagccctgagcaaaagatacaagatcttaagtaacgtatttacccca
gtaacaggcaggatacatgttgtacataaaaaaagtgccaggacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtaaaagatcccaca
tccacctacaagcccgacaaacgtggggaaggctggttaaaaatcaagccggaatatgtc
aatgggctaatggatgagctagatcttcttattgttggtggctactggggaaaaggctca
cgtggtggaatgatgtctcattttctctgtgctattgcggagactccagctccaaatgaa
aaacctactgttttccactctatttgtcgtgttggctctggctatactatgaaggaatta
tatgatctgggtttgaaactggctaaatactggaagccttacaataggaaggaccctccc
tgtaacattttgtgtggcactgaaaaacctgaaatgtacattgaaccttgcaactccgtc
atagttcagatcaaggcagctgagattgttaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaaaataagagaggacaaagaatggtatgaatgcatgact
ttggacatgctagaacatctcagaagcagagcagaagggaagctggcatccaagcacctt
tatattgatgaatatgatgagccacaagagaagaaaaagaaaactgtaccaaaggtgaag
aaggtaattggaatagctgaacagtttaaagctcctgatctttctaatgtcaacaaagtt
tccagtgtgtttgaggatgtagagttttgtgttctgacgggaacaggaagatactccaag
tctgaactggaaagcagaatagctgaatgtgggggcagtgtggtacagaaccctggacct
gacacttactgtgtcattgtaggagctgagaatgtcagagttaaaaacatcattgcttcc
aacaaatatgatgtggtgaaagcagagtggcttcttcagtgttttcagtccaaaatgctg
gtaccttggcagccagcctttatgattcacatgtctcctgacacgagagaacattttgct
cgtgagtatgattgctatggagacagctacacagcagatacagatgttgcacaactcaag
gaagtgttctcaagagtgaaggataataagaagatgcctttggacttgattgctgagtta
gaagaacgttattcatggaacagctgtcaactgtgtatattcagaggaaacactatttat
gtggactattatgctattgttaatgaacccagtaccaaaatccatggcacaagactatca
attagagctttggagctccgtttttatggtgcaaaagtagttcctctccttgaggagggt
gtgtcccatgttgttgtaggagaagatcgttcccgggtaaaagagatgaaagctctcagg
agaatgtttgggaaaaaatttaaaattgtatctgagctgtgggtaacagagtcagtgaaa
gaaggagtcccaaagaatgaaaatcagttcttaatttaa
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