Nonlabens marinus: NMS_1477
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Entry
NMS_1477 CDS
T09770
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nmf
Nonlabens marinus
Pathway
nmf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nmf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NMS_1477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmf03021
]
NMS_1477
03400 DNA repair and recombination proteins [BR:
nmf03400
]
NMS_1477
Enzymes [BR:
nmf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NMS_1477
Transcription machinery [BR:
nmf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NMS_1477
DNA repair and recombination proteins [BR:
nmf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NMS_1477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
AGA2
RnfC_N
Biotin_lipoyl
DVNP
Motif
Other DBs
NCBI-ProteinID:
BAO55486
UniProt:
W8W005
LinkDB
All DBs
Position
1560846..1564655
Genome browser
AA seq
1269 aa
AA seq
DB search
MLATNTERINFSTVTSKAEYPDLLDIQIKSFQDFFQLETKSDRREVEGLYNTFMENFPIT
DTRNQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKSRLKLYCTDPEHEDFETIVQDVY
LGTIPYMTSSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILGIFDLAEEVKASKTGLKKYLGRKL
AARVLKTWHEDFVDEDTGEVVSIERNEIVLDRDTILEKQHIDEIMESQTKTILLHKEDNQ
SADYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLNLDIAMDKQVLTKEDIITIIKHLIMLINSKAEIDDIDHLSNRRVRTVGEQL
SSQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFAK
VNSMGFIETPYRKVKDGVVNLKEEPIYLSAEEEEGMHIAQANLPLENGKIMSDNVIARME
GDFPVVDPSEVVYADVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRVDAPI
VGTGLERQVAQDSRVLINAEGDGTVAYVDAQKVVIEYDRTDREKLISFEPDETSYNLIKF
RKTNQGTSITLKPIVQKGDRVKKGQVLCQGYATEAGELALGRNMKVAFMPWKGYNFEDAI
VISEKVVREDIFTSIHVDEYSLEVRDTKLGNEELTPDIPNVSEEATADLDENGMIRIGAE
VEPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSR
AVKDKKKRAQDKEDIARLEQEYQAKFDDLKTRLVDKLFEIVSGKTSQGVFNDLGEEVLPK
GKKYTLKMLNSVDDFTHLVSGTWTTTKETNDTVADLLHNYKIKENDLQGSLRREKFTISV
GDELPAGIIKLAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRAEDMPFLEDGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGEKLGKNFATPIFDGATLDQINAYTDEAGIPRFGHTYL
YDGGTGERFDQPATVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASSTLREILTVKSDDVVGRAKTYESIVKGEPMPEPGLPESFNVLMHELKG
LGLDLRLED
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgctagcaacaaacacagaaagaattaatttttcaacggtaacttctaaggcagagtat
cctgatctgctggatatacaaatcaaatcgtttcaggatttctttcaattagaaactaaa
tcagataggagagaagtagagggtctatacaacaccttcatggaaaacttccctattacc
gatacacgcaaccagtttgtattggagtttcttgactatttcgtagacccaccacgatac
tctattcaagaatgtattgaacgtggccttacctatagcgtgccacttaagtcacgcctt
aaactttattgtactgacccagaacatgaggactttgagactatcgttcaagatgtttac
ttaggtacaataccatacatgacctcttcaggtacttttgtaatcaatggtgctgaacga
gttgtagtttcacaactacatagatctccaggtgtattcttcggacaatcttttcatgct
aatggaaccaaattatactccgcaagagtaattccttttaaaggatcttggattgaattt
gcaacggatatcaatagcgttatgtacgcttacattgaccgtaagaaaaaattacctgta
actacccttttccgtgctatcggttttgaaagagataaggatatccttggaatttttgac
cttgcagaagaagtgaaggcaagtaagacaggacttaaaaaatacttgggacgtaaactt
gctgctcgtgttttgaaaacatggcatgaggatttcgttgatgaagatactggcgaagtt
gtttctatcgagcgtaacgagatcgtattggatcgcgataccattttagaaaaacaacac
attgatgagattatggaatctcagactaaaaccatccttttgcacaaggaggataatcag
tctgcagattacgcaattattcataacacacttcaaaaggaccctactaactctgaaaaa
gaagcagtagaacatatttatagacaattacgtaacgctgagccgccagatgaagaaact
gcgcgtggtatcatcgataagttgttcttctctgatcagagatacaaccttggtgaggta
ggtcgttaccgtatgaataaaaaattgaaccttgatattgccatggataagcaagtgctt
actaaggaagatatcataaccatcatcaagcacttgatcatgttgatcaactctaaagca
gagattgatgatattgatcacttatctaaccgtcgtgtacgtacagtgggtgagcaatta
agttctcaatttggtgttggtcttgctcgtatggcaagaaccatacgtgagagaatgaac
gtgagagataacgaggtatttacacctattgacttgattaatgcaaagacattgtcttct
gtaattaattcattctttggtaccaaccagttgtctcagtttatggatcaaacaaatcca
ctagcagagatcactcacaagcgccgtctatcggcacttggacctggaggtctttctcgt
gaaagagcaggttttgaggttcgtgacgttcactacacacactacggacgtttatgtcca
attgaaactcctgaaggaccgaatattggtttgatttcttcgctagcagttttcgcgaaa
gtgaacagcatgggattcattgaaactccttaccgtaaggtgaaagacggagttgtgaat
ttgaaagaagagccgatttacttgagtgctgaggaagaagaaggaatgcacattgcacaa
gctaacttgccattagagaatggtaaaattatgtctgacaatgtaattgcacgtatggaa
ggtgacttcccagtagtagacccaagtgaggttgtttatgctgacgttgcacctaaccag
atcgcatccatctctgcatctttgattccattcttggagcatgatgatgcgaacagagcc
ctgatgggatctaacatgatgcgccaggcagttccattgttgcgtgttgatgctcctatt
gtaggtactggtcttgaaagacaagtagcacaagattcaagagtattgatcaatgcagaa
ggtgacggtactgttgcttatgttgatgcacagaaagtggtgatcgagtacgatcgcacg
gaccgtgagaaactgatcagttttgagccggatgagaccagttacaacttgatcaaattc
cgtaagacgaatcaaggtacttccatcacattgaagcctatcgtgcaaaaaggtgaccgc
gtgaagaaaggacaagttctttgtcaaggttatgcaactgaggctggagaactagcatta
ggtcgtaacatgaaagtggcatttatgccatggaaaggttacaactttgaggatgcgatc
gtaatttctgaaaaagttgttcgtgaggacatctttacatctatccatgttgatgagtac
tctcttgaagtaagagataccaaacttggtaatgaagaattgacgccagacatacctaac
gtatcagaggaagctacggctgatcttgatgagaatggtatgatacgcatcggtgctgaa
gtagagccaggagatatccttataggtaagattacacctaaaggagagtctgacccaact
ccagaagaaaaacttcttagagccattttcggtgataaagcaggtgatgtgaaagatgct
tctttgaaagcttctccatcgttacgtggtgtagttatcgataagaaattgttctctcgt
gctgttaaggacaagaagaaaagagcacaagacaaagaagatatcgcaagattggaacaa
gaatatcaagctaagtttgatgatcttaaaaccagacttgtcgacaagctttttgaaata
gtgagcggtaaaacatctcaaggtgtattcaatgacttaggagaagaagttcttcctaaa
ggaaagaaatacacattgaaaatgttgaactctgttgacgactttacccacttagtttct
ggaacgtggactaccactaaagaaactaatgatacggttgctgacttgcttcacaattat
aagattaaggaaaatgaccttcaaggttccttgagacgtgagaagtttaccatctcagta
ggtgatgagcttccagctggaattatcaaacttgctaaagtttatgttgctaaaaaacgt
aaactgaaagtaggagataagatggcgggacgtcacggtaacaaaggtatcgttgcgcgt
atcgtacgtgctgaagatatgccgttccttgaggatggaacaccagtagatatcgtattg
aatccactgggggtaccttctcgtatgaacatcgggcagatttatgaaaccgttctagga
tgggcaggtgagaaactaggtaagaactttgcaacgccaatttttgatggtgcaactctt
gaccagatcaacgcctatactgatgaagcaggaatcccaagattcggtcatacctatttg
tatgatggtggaacaggagagcgctttgaccagccagcaactgtaggtatcatctacatg
ttgaaactaggtcacatggtagacgacaagatgcacgcacgttcaatcgggccatactca
ttgattacccagcagccactaggtggtaaagcacaatttggtggtcagcgatttggtgag
atggaggtttgggcacttgaggcctacggtgcatccagcacacttagagagatcttgaca
gttaagtctgatgacgttgtaggacgtgctaagacttacgagtcgatcgtgaaaggtgag
ccaatgccagagccaggattacctgagtcattcaatgtattaatgcacgaattgaaaggt
ctaggattagacttgagactcgaggattaa
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integrated database retrieval system
