Nakamurella multipartita: Namu_4035
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Entry
Namu_4035 CDS
T00991
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nml
Nakamurella multipartita
Pathway
nml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Namu_4035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nml03019
]
Namu_4035
03400 DNA repair and recombination proteins [BR:
nml03400
]
Namu_4035
Enzymes [BR:
nml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Namu_4035
Messenger RNA biogenesis [BR:
nml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Namu_4035
DNA repair and recombination proteins [BR:
nml03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Namu_4035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_16
RecQ_Zn_bind
B12-binding
CHASE8
Motif
Other DBs
NCBI-ProteinID:
ACV80327
UniProt:
C8XHM4
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All DBs
Position
4449018..4451057
Genome browser
AA seq
679 aa
AA seq
DB search
MLPAADVLARVIAAAAGPQARPREDQVRAVGELVERRRRVLVVQATGWGKSAVYWGATAA
LRGRGAGPTLVVSPLLALMRDQIAAAERAGLRAATINSTNVDEWTQVLDELRADRLDLLL
VSPERLANPRFAAQLPDLLARCGLLVIDEAHCVSDWGFDFRPDYQRLTRILLRLSPDTPV
LATTATANERVTADVAAQLGPDTVTLRGSLARASLGLSVVPGLSTLEGYAWVADALATMP
GSGIVYVLTVAETERLAGFLRERGFDVAAYSGQTQNREELEDRLRANDVKALVATSALGM
GYDKPDLAFCLHLGSPSSPVAYYQQVGRAGRALDTAVAVLVPGPSDERIWEYFATAGIPT
DEQVRRVLGVLDEGPQSLPAIEAATGIRRGRLETLLKILAVDDVVARDPAGWREGEQPWV
YDEAKWSALRRVRSAEADLMRRYAHGQGCLMQFLQQALDDPDPHPCGRCSVCTGELPAPG
ARPDPETISAAQRFFRGQDVVVEPRKLWPSGLPGRKGKIAGLRAGRALAFADDPAWSQVL
ATLWQHDAPAPAEVLDGMVEALRRWSRSWDRPTAVVPMPSRRYPQLVGSVAEHLARIGRL
PLVPALEVTGPPPSAEVSSAVRVRELLARTALRPGVELDGPVLLVDDVIRTRWTVTVASA
LLVQAGAAAVLPLAVHQLP
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtgctcccggccgccgacgtcctggcccgggtgatcgccgccgccgccggaccgcaggcg
cgcccgcgcgaggatcaggtgcgcgcggtgggcgagctggtcgagcggcgccgccgggtg
ctggtcgtgcaggccaccgggtggggcaagtcggcggtctactggggcgcgacggccgcc
ctgcgcggacgcggagccggacccaccctggtcgtctcgcccctgctggcgctgatgcgc
gatcagatcgcggcggccgaacgggccgggctgcgggcggccaccatcaactcgaccaac
gtcgacgagtggacgcaggtgctcgacgagctgcgcgcggaccggctcgacctgctgctg
gtctcccccgagcggctggccaacccgcggttcgccgcccagctgccggacctgctggcc
cggtgcgggctgctggtgatcgacgaggcgcactgtgtgtccgactgggggttcgacttc
cggccggactaccagcggctgacccggatcctgctgcggctgtccccggacaccccggtg
ctggccacgacggcgaccgcgaacgagcgggtgacggccgatgtcgccgcccagctcggg
ccggacacggtgacgctgcgcggctcgctggcccgggcctcgttggggctctcggtggtg
cccgggttgagcacgctggaggggtacgcctgggtcgccgacgcgctggccaccatgccc
ggctcgggcatcgtctacgtgctgaccgttgccgagaccgagcgactggccgggttcctg
cgcgagcggggcttcgacgtggccgcctactcgggccagacccagaaccgggaggagctg
gaggaccggctgcgggccaacgacgtcaaggcgctggtcgcgacgtcggccctgggcatg
ggctacgacaagcccgacctggcgttctgcctgcacctgggctcgccgtcgtccccggtc
gcctactaccagcaggtcggccgggccggccgggcgctggacaccgcggtcgccgtgctc
gtgccgggcccgtccgacgagcggatctgggagtacttcgccaccgccggcatccccacc
gacgagcaggtgcggcgggtgctgggggtgctggacgagggcccacagagcctgcccgcg
atcgaggcggccaccgggatccggcgcgggcggctggagacgctgctcaagatcctggcc
gtggacgacgtcgtcgcccgcgacccggccggctggcgggagggcgagcagccctgggtc
tacgacgaggccaagtggtcggcgctgcgccgggtgcgctcggccgaggccgacctgatg
cgccggtacgcgcacgggcagggctgcctgatgcagttcctgcagcaggccctggacgat
cccgatccgcacccgtgcgggcggtgctcggtgtgcaccggggagctgcccgcgcccggc
gcccgcccggacccggagacgatcagcgccgcccagcggttcttccgcgggcaggacgtc
gtcgtcgaaccgcgcaagttgtggcccagcggcctgcccggccgcaagggcaagatcgcc
ggcctgcgggccggccgggcgttggccttcgccgacgacccggcctggtcgcaggtgctg
gccacgttgtggcagcacgacgccccggccccggccgaggtgctggacgggatggtcgag
gcgctgcggcggtggtcgcggtcctgggaccgaccgacggcggtggtgccgatgccgtcc
cgccggtacccgcagctggtcggctcggtcgccgagcacctggcccggatcggccggctc
ccgctggtgccggccctcgaggtcaccggtcccccgccgtcggccgaggtgtcctcggcg
gttcgggtccgggagttgctggcccgtaccgcgctgcggccgggcgtcgaactcgacggg
cccgtgttgctcgtcgacgacgtcatccggacgcggtggacggtgacggtggcctcggcc
ctgctggtccaggccggcgccgccgccgtgctgccgctggccgtgcaccagctgccctga
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