Neisseria meningitidis M04-240196 (serogroup B): NMBM04240196_0139
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Entry
NMBM04240196_0139 CDS
T01948
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nmq
Neisseria meningitidis M04-240196 (serogroup B)
Pathway
nmq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nmq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NMBM04240196_0139 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmq03021
]
NMBM04240196_0139 (rpoC)
03400 DNA repair and recombination proteins [BR:
nmq03400
]
NMBM04240196_0139 (rpoC)
Enzymes [BR:
nmq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NMBM04240196_0139 (rpoC)
Transcription machinery [BR:
nmq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NMBM04240196_0139 (rpoC)
DNA repair and recombination proteins [BR:
nmq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NMBM04240196_0139 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADZ00678
LinkDB
All DBs
Position
147416..151591
Genome browser
AA seq
1391 aa
AA seq
DB search
MNLLNLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQLLTEDDYYNKLDEYGDDFDA
KMGAEGIRELLRTLNVAGEIEILRQELESTGSDTKIKKIAKRLKVLEAFHRSGMKLEWMI
MDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELHAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVWDILEEVIRE
HPIMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDRINAKGEGSLFADVKEVHRAYH
TKQVELGTKITVRLREWVKNEAGEFEPVVNRYETTVGRALLSEILPKGLPFEYVNKALKK
KEISKLINASFRLCGLRDTVIFADHLMYTGFGFAAKGGISIAVDDMEIPKEKAALLAEAN
AEVKEIEDQYRQGLVTNGERYNKVVDIWGRAGDKIAKAMMDNLSKQKVIDRAGNEVDQES
FNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRDR
ILGRVTASDVVDPSSGETLVEAGTLLTEKLVDMIDQSGVDEVKVRTPITCKTRHGLCAHC
YGRDLARGKLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTA
RFSSQMRYVANNKGELVVIGRSCEVVIHDDIGRERERHKVPYGAILLVQDGMAIKAGQTL
ATWDPHTRPMITEHAGMVKFENVEEGVTVAKQTDDVTGLSTLVVIDGKRRSSSASKLLRP
TVKLLDENGVEICIPGTSTPVSMAFPVGAVITVREGQEIGKGDVLARIPQASSKTRDITG
GLPRVAELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIITDVDGVAYETLISKEKQIL
VHDGQVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVII
RQMLRRVNIADAGETGFITGEQVERGDVMAANEKALEEGKEPARYENVLLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRHQQWQGVE
QETAETQVTDE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgttgaacttatttaatccgttgcaaactgccggcatggaagaagagtttgat
gccattaaaatcggtattgcctctcccgaaaccatccgctcatggtcttatggcgaagtc
aaaaaacctgaaaccatcaactaccgtacgttcaaacctgagcgtgacggtttgttctgt
gccaaaatctttggcccggtcaaagactacgaatgcttgtgcggaaaatacaaacgcttg
aaatttaaaggcgtaacgtgtgaaaaatgcggcgtggaagtaaccctgtccaaagtgcgc
cgcgaacgcatgggtcatatcgaattggctgcgcccgtcgcacatatttggttcttaaaa
tccctgccttcccgcttgggtatggtgttagacatgactttgcgcgacatcgagcgcgta
ttgtactttgaagcatttgtggtaaccgatcccggtatgactccgctgcaacgccgccaa
ttgctgactgaagacgattactacaacaagctggacgaatacggcgacgatttcgatgcc
aaaatgggtgcggaaggtatccgcgaattgctgcgtaccctgaatgtagcgggcgaaatc
gaaatcctgcgccaagagttggaatcgaccggttccgacaccaaaatcaaaaaaatcgcc
aaacgcttgaaagtattggaagccttccatcgttccggtatgaaactggaatggatgatt
atggatgtgctgccggtattgccgcctgatttgcgtccgttggttccattggatggtggt
cgttttgccacttccgatttgaacgatttgtaccgccgcgttattaaccgtaacaaccgt
ctgaaacgtctgttggaactgcatgcgcctgacatcatcgtccgcaacgaaaaacgtatg
ttgcaagaagcagttgactcgctgttggataacggccgtcgcggtaaagccatgaccggc
gccaacaaacgcccgctgaaatcattggcagacatgattaaaggtaaaggcggtcgcttc
cgtcaaaacctgttgggcaaacgtgtggactactccggccgttccgtgattaccgtaggc
ccgtacctgcgtctgcaccaatgcggtttgccgaaaaaaatggctttggaactgttcaaa
ccgttcattttccacaaattggaaaaacaaggtttggcctctaccgttaaagcagcgaaa
aaattggtagagcaagaagtaccggaagtatgggacatcttggaagaagtcatccgcgaa
catccgattatgctgaaccgtgcgccgaccctgcaccgtttgggtattcaagcgttcgaa
cctatcttgattgaaggtaaagcgattcagttgcacccattggtgtgtgctgcgttcaac
gccgactttgacggcgaccaaatggcggtacacgttccattgagcttggaagcacaaatg
gaagcacgcacgctgatgctggcttcaaacaacgtattgtctccggccaacggcgaaccg
attatcgtaccttcccaagacatcgtattgggcctgtactatatgactcgcgatcgtatc
aatgccaaaggcgaaggcagcctgtttgccgatgtgaaagaagtgcatcgcgcataccat
accaaacaggtcgagctgggtacgaaaatcaccgtacgtctgcgcgaatgggtgaaaaac
gaagcaggtgagtttgagcctgtcgttaaccgttacgaaacaaccgtcggccgtgcattg
ttgagcgaaatcctgccgaaaggcctgccgtttgaatatgtcaacaaagcgttgaagaaa
aaagaaatttctaaactgattaacgcatcgttccgcctgtgcggcttgcgcgatacggtt
atctttgctgaccacctgatgtacaccggtttcggatttgcggcaaaaggcggtatttcc
attgccgttgacgatatggaaattccaaaagaaaaagcggccttgctggctgaagccaat
gccgaggttaaagaaatcgaagaccaataccgtcaaggtttggttaccaacggcgaacgc
tacaacaaggtggtcgatatttggggtcgtgccggcgataagattgctaaagcgatgatg
gacaacttgtccaaacaaaaagttatcgaccgtgccggcaacgaagtcgatcaagagtca
ttcaactccatttatatgatggcggactccggtgcccgtggttctgcagctcagattaaa
cagttgtccggtatgcgtggcttgatggcaaaacctgacggctcgattattgaaacgccg
attacctcaaacttccgtgaaggtctgaccgtattgcaatactttattgcgacccacggt
gcgcgtaagggtttggcggataccgcattgaaaaccgcgaactccggttacctgactcgt
cgtctggtagacgtaactcaagatttggtcgttgttgaagacgattgcggtacttcagac
ggctttgtcatgaaggcagtggtacaaggcggtgatgtgattgaagcattgcgcgatcgt
attttgggtcgtgttaccgcgtctgacgttgtcgatccgtcaagtggcgaaaccttggtt
gaagccggtacgttgctgactgaaaaactggtggatatgatcgaccaatccggtgtcgat
gaagtcaaagtccgtacgccgattacttgtaaaacccgtcacggcctgtgtgcacactgt
tacggtcgtgacttggcacgcggcaaactggttaacgccggtgaggcagtcggtgtgatt
gctgcacaatccattggcgaaccgggtacccagttgaccatgcgtacgttccacatcggt
ggtgcggcatcccgtgcggcagcagccagccaagtggaagccaaatccaacggtacggca
cgattcagcagccagatgcgctacgttgccaacaacaaaggcgagttggttgtcatcggc
cgttcttgtgaagtcgtgattcacgacgatatcggccgtgaacgcgaacgccacaaagta
ccttacggtgccatcctgctggtacaagacggtatggccattaaagccggtcaaaccttg
gcaacctgggatccgcatacccgtccgatgattaccgaacacgcaggtatggtgaaattc
gaaaacgtggaagagggcgttaccgttgccaaacaaaccgatgatgtaaccggtttgtcc
actttggtggtgattgacggtaaacgtcgttcctctagtgcttccaaactgctgcgtccg
actgtgaaactcttggacgaaaacggcgtggaaatctgtattcccggtacttctactccg
gtatccatggcattccccgttggtgcggtgattaccgtacgcgaaggtcaggaaatcggt
aaaggcgacgtattggcgcgtattccgcaagcctcttccaaaacccgcgacattaccggc
ggcctgccgcgcgttgccgagctgtttgaagcacgcgtgccgaaagatgccggtatgttg
gcggaaattaccggtaccgtttccttcggcaaagagaccaaagggaagcaacgtctgatt
atcactgacgtggacggtgtagcatacgaaaccctgatttctaaagagaaacagattctg
gtacacgacggtcaagtggtaaaccgcggcgaaaccattgtggacggcgcggtcgatccg
cacgatattctgcgtctgcaaggtatcgaagcactggcacgctacattgtccaagaggtg
caagaggtttaccgtctgcaaggtgtgaagatttctgataaacacatcgaagtcatcatc
cgtcaaatgttgcgccgtgtgaacattgcggatgccggcgaaaccgggttcattaccgga
gagcaggtcgaacgcggcgatgtgatggcggccaatgaaaaagctttggaagaaggcaaa
gaaccggcgcgttacgaaaacgtattgctgggtattaccaaagcttccctgtccaccgac
agtttcatttctgccgcatcgttccaagaaacgacccgtgttctgaccgaagccgcgatt
atgggcaaacaagacgaactgcgcggtttaaaagagaacgtcatcgtcggccgcctgatt
cctgccggtaccggtttgacttatcaccgcagccgtcatcagcaatggcaaggggtagag
caggagactgctgaaacccaagtaacggatgaataa
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