Nestor notabilis (Kea): 104402427
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Entry
104402427 CDS
T08494
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nnt
Nestor notabilis (Kea)
Pathway
nnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104402427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnt03019
]
104402427
Messenger RNA biogenesis [BR:
nnt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104402427
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104402427
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
Not1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
104402427
NCBI-ProteinID:
XP_010008608
LinkDB
All DBs
Position
Unknown
AA seq
2164 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAASHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGLGTGTLGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAXXXXXXXXXXXELLYVVPFVAKVLESSVRSVVFRPP
NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQ
LSAPKKDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHIT
LNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEES
RMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQL
AQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPE
QIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKC
MTELEQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSG
ADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNH
LVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRIN
AHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYL
LREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQA
EQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLL
QDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFV
YAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGT
LRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVELP
FMSL
NT seq
6492 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggagatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgcctattctcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtca
ctgattacaaagccaaattttatctcgacgctgtcctacgccattgacaatccattgcac
tatcagaagagtctaaagccttcaccccacttatttgcccaattgagtaaagtcataaaa
ttaagcaaagttcaagaggtgatttttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctactttttgggcagaagggagcctttggggtaggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgtcct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtacaagtgtggaagagtgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttgggaatgatggctcgaact
cattcggggttgacggatggtattccattacaatctatttcggctcctggtagtgggatt
tggagtgatgggaaagataaaagtgatggagcacaagcccatacctggaatgtagaggtc
ttaatcgatgttcttaaagagctgaatcctagcctggacttcaaagtagtaacctatgaa
ttggaccatccaggatttcagattcgtgacagcaagggcctgcatattgtggtgtttggc
atccagagagggctgggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagaaggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
ttcgctgactacccttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaaccgggaaattgctacatggaagagcctggatttgattgaatctctgttacgactg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttccaatcaagcattgt
ccagatatgttggtcttggccttattgcagatcaacacgtcctggcataccttgcgccac
gaactcatctcgacactcatgccaattttccttggcaaccatcccaattctgccatcatt
ttgcactatgcatggcatggacagggccagtctccttcaattcgtcagctgatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcaaaactctcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgctcttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggcggccttgctccagaaaaagaccagcccaaaagt
gctcaacttcctccagaaaccttggcaactatgttggcatgtcttcaagcttgtgctggg
agtgtttctcaggagctgtcggagacaatcctcaccatggtagctaactgcagcaacgtc
atgaacaaagccaggcagccaccacctggagtcatgcccaaaggacgcccgcccagcgct
agcagcttggatgccatctctcctgtacagatcgactcgcttgcaggaatggcatctctt
agcttaggtggctcagctgcttctcacacccagagcatgcaaggtttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcattcccccctctttccacccaa
aaccagacaacaggtttcagtggcattggaggactatcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcttaggaactggaaccctgggccttcctgcagtgaac
aatgaccccttcgtgcaaaggaagctgagcacatctggactgaaccagcctacgttccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggctaacagctacttccagcgtatttacaaccatccacca
catccaaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggattccaac
attaaacgggaacgagaagtgttcaactgtatgctgaggaacttgtttgaggaataccgc
ttctttccccaatacccagataaagagctgcacataacagcctgtctctttggtggtatc
atagagaaaggactggttacttacatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcgtccaaaatgtactattttggtattgctgcactagacaga
tttaaaaataggttgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcacttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagatgtgccaccttccattaatactaccaacattgatacactgttagta
gcaacagatcaaactgagagaattgtggaacctccagaaaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggttgaagaattgaaggaa
acagtgaaagaagagttcatgccttgggtttcacagtatcttgtgatgaagagagtcagt
attgagcccaactttcacagcttatattcaaacttccttgacacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaagtgctactgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacgctggctaaaaacaagcccatcttgcatacagatttggatgtgaaatcactg
ctgctggaagcatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaattgctttatgtg
gtgccatttgttgccaaagtcttagaatccagtgtcaggagcgtggtgttcaggcctcca
aacccgtggacaatggccattatgaatgttttagctgagctacatcaagaacatgatcta
aaattgaatctgaagtttgagattgaggtgctctgcaagaatcttgcactagacatcaat
gagctgaagcctggaagcctcctgaaagacaaggatcgtctgaaaaatctggatgagcag
ctgtctgctccaaagaaggacgtgaagcagccagaagagctaccacccatcacaacaact
actgcttctacaactccagctaccagcaccacttgtacagccacagttcctccacagccc
cagtacagttatcatgacatcaacgtctattctttaggagggttggctccacatattacc
ttaaatccaacgatcccgctgttccaagcccacccacagctgaagcagtgtgtgcggcag
gcgattgagcgagcagtgcaagagcttgtccatccagtggtggatcgatctattaagatt
gccatgactacttgtgagcagatagtcaggaaggactttgcgctggattcagaggagtca
cgaatgcgtgtggccgcacaccatatgatgcggaacctgacagctgggatggccatgatc
acctgcagggaacctttgctgatgagcatagctaccaacttgaaaaatagttttgctact
gcactgagggcagcctccccacaacagagggacatgatggagcaggcagcagcccagtta
gcacaggacaactgtgagctggcctgctgctttatccagaagacagctgtggaaaaggca
ggccctgagatggataagaggctcgcaactgaatttgagctcagaaaacatgctagacaa
gagggtcgtcggtactgtgatcctgttgtgttaacttaccaggctgagaggatgccagaa
cagatcaggttaaaggttggaggtgtggacccaaaacagctggctgtttacgaagagttt
gcacgcaatgtccctggcttcctgcctaccaatgacttaactcagcctacaggattcttg
gctcagcctatgaagcaagcttgggctacagatgacgtagcacaaatctatgacaaatgt
atgacagaactggagcagcacctgcagtccattccacacaccttggccatgaatcctcaa
gctcaagcattgcgcagcctgttggaggctgtagtagtggctcggaactcgcgggatgct
attgctgcacttggactactgcagaaggctgtagagggcttactggatgccaccagtggg
gcagatgctgacctcctgcttcgctatcgtgagtgtcatctgcttgtgctgaaggctctg
caggacggccgtgcctatggatctccatggtgtaataaacaaattactaggtgcctgatt
gaatgcagagatgagtacaagtacaatgtggaagctgtggagctgctgatccgcaatcac
cttgttaacatgcagcagtatgaccttcacttggctcagtcaatggagaatggcttgaac
tacatggctgtggcatttgccatgcaattggtaaagatcctgttggtggatgagagaagt
gttgcccatgttacagaggcagatctatttcacacaattgagacactcatgaggattaat
gctcattccagaggaaacgccccagaagggttaccccagctgatggaagtggtccgatca
aactatgaagcaatgattgaccgtgctcatggaggtcccaatttcatgatgcattcagga
atttcccaagcctctgagtatgatgacccaccaggtctgagggagaaggcagaatacctg
ctgcgggagtgggtgaacctctaccattcagctgcagcgggccgtgacagtaccaaagca
ttctctgcatttgttggacagatgcaccagcaaggaatcctgaaaaccgatgacctgatc
acccgctttttccgcctctgcaccgaaatgtgtgttgagatcagctatcgtgctcaggct
gagcagcagcataaccctgctgccaaccccactatgattcgagccaagtgctaccacaat
ctggatgcctttgtgcgacttattgcactgctagtgaagcactctggggaggcaactaac
acagttacaaagatcaacctcttgaataaggtccttggcattgtggttggagttcttctg
caagaccacgatgttcggcagagtgagtttcagcaacttccttaccatcgtattttcatc
atgctgctgttggaattaaatgctcctgagcatgtgctggagaccatcaacttccagaca
ctcacagctttctgtaacacatttcacatcctgaggcctacaaaagctccaggttttgtt
tatgcctggctggaactgatctcccatcggatatttattgcaagaatgctggcacataca
ccacagcagaagggttggcctatgtatgcccagttactgattgatctcttcaagtactta
gctcctttccttagaaatgtggaactcaccaaacctatgcaaattctttacaagggcact
ctgcgtgtgttgctggtcctgttgcacgatttcccagaatttctttgtgactaccattat
ggtttctgtgatgtgatcccacctaactgtattcagctaaggaatctgatcctgagtgcc
ttcccacggaacatgaggcttccagaccctttcacccccaatctaaaggtagaacttcct
ttcatgagcttg
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integrated database retrieval system
