Nestor notabilis (Kea): 104410301
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Entry
104410301 CDS
T08494
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
nnt
Nestor notabilis (Kea)
Pathway
nnt03008
Ribosome biogenesis in eukaryotes
nnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnt00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104410301 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
104410301 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnt03019
]
104410301 (XRN1)
03009 Ribosome biogenesis [BR:
nnt03009
]
104410301 (XRN1)
03016 Transfer RNA biogenesis [BR:
nnt03016
]
104410301 (XRN1)
03036 Chromosome and associated proteins [BR:
nnt03036
]
104410301 (XRN1)
Messenger RNA biogenesis [BR:
nnt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104410301 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
104410301 (XRN1)
Ribosome biogenesis [BR:
nnt03009
]
Eukaryotic type
Pre-60S particles
RNases
104410301 (XRN1)
Transfer RNA biogenesis [BR:
nnt03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104410301 (XRN1)
Chromosome and associated proteins [BR:
nnt03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104410301 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
104410301
NCBI-ProteinID:
XP_010018726
LinkDB
All DBs
Position
Unknown
AA seq
1734 aa
AA seq
DB search
MNGIIHQCSHPNDDDVHFRISEDKIFADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMN
QQRGRRFRSAKEAEDKIKKALEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKI
STDKSWQGVTVYLSGHETPGEGEHKIMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLT
SHEAHFALLREEVRFGGKKSQRACAPEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDI
ERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYRTYMAILPELGGYINENGHLNLKR
FEKYLTRLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGIAAEEARKIKQKKQKAQENS
ICLAALEKNEGEVTPKTVLEDEPEDDDLFETEFRQYKRTYYMTKMGVEVVSDDFLADQAE
CYVQAIQWILHYYYHGVQSWSWYYPYHYAPYLSDIRNIGELKIKFELGKPFMPFEQLLAV
LPAASKDLLPKCYQHLMISQDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLLA
MESCNKCLKEEEKRRNTHSACLMYWYDKDAEFQYMSPWPEKFPAIERCHTRYKTIPLDAW
HVEITHNKITKINKSALYFCGFPTLKHIKHKFHLRKSGVQVFQQSSHGENMMLEIIANEN
SKEQVVENVASLVLGKRVFVNWPHLEEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPT
KVAYVGDKEQSTWLKDIQGISEHYQRRKGIIIHETSIVVYAQLLTGNRYQLKQNGEVYLE
KQWSKQVLPFVYQTVVKDIKAFDSRFSNIKTLDDLFPPGSIAFMLGSPYYGCMGEVQDSR
DVITEGRIRVVFNIPCEPQLDPLIQNQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFI
GRGSKKNPHGEHKANVGLNLKFNKKNEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPEL
FNYIAKNSQEDIFYEDDIWPGEDENGAEKVQEIVAWLKAHPVSALSRASCDLQILDAAIV
EKIEEEIEKCKQRKSNKKVRVTVKPHLLYRPLEQQNGVVPDRDAEYKLFDRVVNVRENFS
VPVGLRGTIIGIKGASRETDVLFEVLFDEEFLGGLTIRCSPARGYRLPSSALINLSHGSR
SEMGNQKLTAIVKPQPAVNNYNSYVSDLSSVCSQKVHLGGLNHSPRSLFVPTQQMNGRQH
YNLRAENQGTSNSPQKGSFLSGNQKNKAQSKQDDEFCSIWQSLQNSGKSHHIQQNMHEKG
AVLPQEMKLGTGNQFYKPGFNDSSFKGQQRKQEPYKKFKEDSKVTRGESQPHSKISNKQN
FAGVNKYNVKLLKRNESPNMPGIQKAAVDGSCTGGKKDNELESLLASLKISKENEVQTYS
KEARATNEEHLSPQSFAMKGTQMLKEILKIDGSDQETRNEVKSQVNDVPAPPSRQDCHGA
ALQYRQSKKMAAYMNKPHSTGGPQNTPALETGGHPFACPQPALSTVAELCRICSLVGMSQ
PDFSFLKTPQTMTVCHIKLSNGLLVHGPQCHSEAEAKEKAALFALQRLNAIGVNFPSPPP
PPVFPNYQPLGVPVPPGSIPPVFAQPTANVMPPSSHMFGPVSWGTPVPKHYYPGSYPGSV
SLAGAIPVGSHNQFIPLQVTKKRAASKKNFEHKEFQSSPQAAPLKNEQPVSSDHTQQDSS
SAPLKSPQAAQSTVSFQDNVATPRVPHNKSTPNTSSKRKSRKLAVNFGAPKSSE
NT seq
5205 nt
NT seq
+upstream
nt +downstream
nt
atgaatggcattattcatcagtgttcgcatccaaatgatgatgatgttcacttcagaatc
tcggaagataagatttttgctgatatttttcactatttggaagtactgtttcgcatcatt
aaaccaaggaaggttttcttcatggcagttgatggagtagctccaagagcaaaaatgaat
cagcagcgtgggagacgttttagatcagcaaaagaggcagaggacaaaataaaaaaggct
ttagaaaagggagaaactctcccaacagaagccagatttgactccaactgtattacacca
ggaactgaattcatggccagattgcatgagcatcttaaatactttgtaaatatgaagatt
tccacagacaaatcctggcaaggagtaacagtctacttatcaggccatgagactccgggg
gaaggtgagcataaaattatggagttcatcagatcagaaaaagcaaagccccatcacgac
ccaaacacaagacactgtctctatggcttagatgctgacttgattatgctgggattaaca
agtcatgaggcacactttgcactcttaagagaagaagtcagatttggtggtaaaaaatct
caaagagcatgtgccccagaggaaaccacatttcatttactgcacttatcacttatgaga
gaatatatcgattatgaattttcaccagtaaaagacaagatttcctttgaatatgatatt
gaaaggataatagatgattggatcttaatgggtttccttgtaggaaatgattttattcct
catctacctcatttacacattaatcatgatgcactgccgctactttatagaacatacatg
gctatcttgccagaactgggaggttacataaatgagaatggacatctgaatttaaaacgc
tttgagaaatatctcacgagattatcagattttgatcgtgaacacttcagtgaagtcttt
gtagacctaaaatggtttgaaagtaaagtaggcaataaatacctcaatgaggcagctggt
attgcagcagaggaagccagaaaaattaaacaaaagaaacaaaaggctcaggaaaactcg
atatgtttggctgctttagaaaaaaatgaaggtgaagtgacccctaaaactgtattggaa
gatgaaccagaagatgatgatctgtttgaaactgaatttaggcaatacaaaagaacttac
tacatgactaaaatgggggtagaagtagtttctgatgacttcttggctgatcaagctgaa
tgttatgtccaggcaatacaatggattttgcattattattaccacggagttcagtcatgg
agctggtattatccttatcattatgcaccttatctgtcagatattcgcaacataggtgaa
ctcaaaatcaaatttgaactgggaaaacctttcatgccatttgaacagcttcttgctgta
cttccagcagctagcaaagatctgctacctaaatgctaccagcatttgatgattagtcaa
gactctcctattatagagtattatccaccagactttaaaactgatctaaatggaaaacag
caagaatgggaagctgtagtattaatcccatttattgatgagaaacgactgctgctggcc
atggaatcctgtaataagtgcctaaaagaagaggagaaacgaagaaatactcatagtgct
tgcttaatgtactggtatgacaaagatgcagagttccagtacatgtcaccgtggcccgag
aaattccctgcaatagaaagatgccatacaaggtataaaactatacctttggatgcttgg
cacgtagaaataacccacaataagataactaaaatcaacaagagtgcattatatttctgt
ggatttcctactttaaagcacattaaacataagttccatcttagaaaaagtggtgtccag
gtgtttcagcaaagcagccatggagaaaacatgatgttagaaatcatagctaatgagaac
tcaaaagaacaggtagtagaaaatgttgccagtttggtacttggaaaacgtgttttcgtt
aactggccacaccttgaagaagccagagttgttgctgtgtcagatggagaaactaagttt
tatttggaagaaccacatggcacacagaagctttacatgggaaatgcagtgcccccaact
aaagtggcatacgttggagataaggaacaaagcacatggttaaaagacattcaaggcatt
tcagagcactaccagagaagaaaaggaataattatccacgaaacatcaatagttgtatat
gctcagttactcactggtaatagataccaactgaaacaaaatggagaagtttatttggag
aagcagtggtccaaacaagttcttccttttgtttatcaaactgttgtcaaggatatcaaa
gcctttgactctcgtttttcaaacatcaaaactttggatgacttatttcctcctggaagt
atagcgtttatgctgggatctccttactatggctgcatgggagaagttcaagattcacgt
gatgtgatcacagaaggtagaattcgtgtcgttttcaatattccatgtgaaccccagctt
gatcctttaatacagaaccagcataaatactctgtgaaatacaatcctgcatatattttg
gccagccgtcttggagtaagtggatatcttgtctccagatttacagggagtatctttatt
ggaagaggatcaaagaaaaacccccatggagaacacaaagcgaatgtgggactaaacctg
aagttcaataagaagaatgaagaagttcctggctatactaagaaagttggaaatgaatgg
atgtattcttctgcagtagaacaactacttgctgagtatttagaaagggttcctgaactg
tttaattatatagccaagaatagccaggaagatatcttctatgaagatgacatttggcct
ggagaggatgagaatggagctgagaaagttcaagaaattgttgcctggttaaaggcacat
cctgtgtctgctttgtctcgcgcatcttgtgacttgcaaattttggatgcagccattgtt
gagaaaattgaagaagaaatagagaaatgcaagcagagaaagagcaacaagaaggtgcga
gtaacagtgaaaccccatttactgtacagaccattagaacaacagaatggggttgttcca
gatagagatgcagagtataagctgtttgaccgtgttgtcaatgtaagagagaacttttct
gttccagttggtcttcgaggtaccattataggaatcaaaggagctagtagagaaacagat
gtgctctttgaagtcctgtttgatgaagaattccttggaggcctaactataaggtgctca
cctgccagaggatatcgtctgccatcaagtgccttaattaacctgtctcatggtagtcgg
tcagaaatggggaatcaaaaactgacggccatagttaaacctcagccagctgtgaataac
tacaattcatacgtgtctgatctgtcatctgtgtgctcacaaaaagtgcatctaggaggc
ctcaaccattctcctcgctccctttttgttcctactcaacagatgaatggaagacagcat
tacaatctcagggctgaaaatcagggcacctctaactcaccccagaaaggatcatttctg
agtggcaatcagaaaaataaagcacagagtaagcaagatgatgaattttgcagcatatgg
cagtcattgcagaattctgggaagtctcaccacattcagcaaaacatgcatgagaagggt
gcagttctacctcaggaaatgaagctgggaactggcaatcagttctacaagccaggattc
aatgacagcagctttaaaggtcagcagagaaagcaggagccatataaaaaatttaaagaa
gattccaaagttacaagaggtgaaagtcagccacatagtaaaatatcaaacaaacagaat
tttgcaggtgtgaataagtacaatgtcaaacttttgaagaggaatgaaagccccaacatg
ccgggaattcagaaagctgcagttgatggttcctgtacaggtggaaagaaggacaatgaa
cttgaaagccttctagcttctttgaaaatttccaaagaaaatgaagtgcagacttattcc
aaggaagcaagagctacaaatgaagaacatctgtcaccacaatcatttgctatgaaagga
acacagatgctcaaagagattttgaagatagatggctctgaccaggaaacaaggaatgaa
gtgaaatcccaagttaatgatgttcctgctccccctagcagacaagattgccatggagct
gccttgcaatatagacaaagtaaaaaaatggctgcttatatgaacaagcctcatagcact
ggaggccctcagaacacaccagcactggaaaccggaggtcacccttttgcttgtccacag
cctgcactatctactgttgctgaactttgtcgtatttgttctcttgttggaatgtcacaa
ccagatttctctttcctaaaaacaccacagacaatgacagtttgtcacataaaattatca
aatggtttgttggttcatggaccccagtgtcattctgaagctgaagcaaaggagaaagct
gcattgtttgctttacagcgtttgaatgctataggagtaaacttcccttcgcctccacct
ccgccagtgtttccaaattatcagccactgggagttcctgtaccacctggatctattcct
ccagtatttgcacaacccactgctaatgtaatgcctccatcgtctcacatgttcggtcca
gtgtcctggggaacgccagtgcctaaacattattatcctggctcctatccgggaagtgtg
tctcttgcaggagctatacctgttggttctcacaaccagtttatacctctgcaggtaact
aaaaaaagggctgctagcaagaaaaactttgagcacaaggagtttcagagttcccctcaa
gctgcaccactaaagaatgaacagccagtgtcttctgaccacactcagcaagatagttct
tcagctcctttaaaatctcctcaagctgctcaatccactgtttcatttcaagacaatgtg
gctactccaagagttcctcataacaaatcaacaccaaacacttccagcaagcgaaagtca
agaaagctggctgtcaattttggcgcaccaaaatcttcagaataa
DBGET
integrated database retrieval system
