Nelumbo nucifera (sacred lotus): 104598503
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Entry
104598503 CDS
T04131
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104598503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104598503
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104598503
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104598503
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
WEF-hand
Motif
Other DBs
NCBI-GeneID:
104598503
NCBI-ProteinID:
XP_010258901
UniProt:
A0A1U8AA34
LinkDB
All DBs
Position
Un
AA seq
2454 aa
AA seq
DB search
MLPFSPTISNQIRFLLQSLNDSNFDSVFRELCQFVDYGSEGSILLLQSCLDHVNFHGGDM
QNVQWKPDIIAAIFRYLLDKPNFSTVLSEALRSTVVSEGFLRDFFGALNFSVSEKIAIGL
ALSDSENLDIRTSGQNFCMFQIEELCSHPASIDSQEQIQDIVMFLNRTEGLATHVDSFMQ
MLSLLQLKEKTSFILAPLFSDDSHDASSLSHLDLFYECKENDFDAVLAEIEKEISMADVM
KELGYGCTVNSSHCKEMLSLFLPLNEVTLARIIGTIARTHIGLEDNQNMYSTFCSALGSS
SSSDTSWLSSWNIDVLVDSIKQLAPGTNWISVMENLDHEGFYFPNEDAFRFFMSVYANAC
QDPFPLHAICGSVWKNAEGQLSFLKYAVSSPPEIFSFAHSTRQMTYVDAIQGQKLSYGNA
NQAWSCLDLLEVLCQLAERGHVVSIRSMLEYPLKHCPEVLLLGMAHINTTFNLLQYEVSS
TVLPMIVGNAIRSGIVLQIWHINPNLVLRGFVDIHSADQDNMSRILGICQEQKILSSVLD
AAPFYFSIKLAALASRKEHINLEKWLNDNLSTYKDVFFEECLKFLKEIMFDAAQDVPATP
FRHTGAMVNAYSETSSTIFKVLQAHSGQITSRQLSEEMKKLHAASVHTNPRLQNGGTTDS
STSDGYADDIEAEANSYFHQMFSGQLSIDAMVQMLARFKESSDKREQSIYECIVGNLFEE
YKFFPKYPERQLKIAAVLFGSLIKHQLVTHLTLGIALRCVLDALRKSADSKMFVFGVKAL
EQFLDRLVEWPQYCNHILQIAHLRGTHSELVAFIERALARISSGHSEPNGGISSTEQHQV
STQAPMENVEASESLWQLGGSGTTQPGQQLSSALQLQQRQQGFLDERPRTSTTSVSYMKP
VISPAGQASLVSTQDTLNNQKLPVSQSFQTVSSQNTASGLATVSSSTGFLRPSRGIASTG
MLRQHSYNTGFGSALNIETLVAAAERRDTPIEAPASEIQDKILFMINNISAANLEAKAKE
FTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIVKATYENCKVLL
RSELIKSSSEERSLLKNLGSWLGKFTIGRNQALRAREIDPKVLIIEAYEKGLMIAVIPFT
SKILEPCQGSLAYQPPNPWTMGILSLLVEIYALPNLKMNLKFDIEVLFKNLGVDMKDVKP
TSLLKDRVREVEGNPDFSNKDIGASQAQMVTEVNSGILSTLGQVELQPEVVNPSHPGHSN
VLSQYATPLHLASGPLMEDEKMAALSLSDRLPSGQGLSQVAPSQTPFSVSQLPTPIPNIG
THVIVNQKLSNLGLQLHFQRILPVAMERAIKEIISPIVQRSVTIAMQTTKELVLKDYAME
SDESRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSHLRNLLQALSIASELLEQAVQLVT
NDNLDLGCAVIEQAATEKALQSIDGEIAQQLSLRRKHREGVGPTYFDASTYTQGPMGVVP
EALRPKPGRLSHSQQRVYEDFVRFPWQNQPSQSSSTIAAGSPVSSGGSISSGLSRAYGSM
SGQLSSGIYSSVQGGQGFSAVGQPMDIISEEMDAASTQLLSASSPHIGVTDGVMQHTSEI
NSTVASFPPSAGAPELLSVEPSPSVKDSGATTQPSPTISAAERLGGGMSEPLLSTGDALE
KYLLVAQKLEAFVAKDARDAEIQGVIAEVPEIILRCISRDEAALAVAQKVFKSLYENASN
SVHVGAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNKEITVGLIRSELLNLAEYNVH
MAKLIDGGRNKAATEFSISLLQTLVVQESGVSVSELHNLVDALAKFQLAMRPGSPESLQQ
LVEIARNPASNSAALSGLAVGKDDKARQSRDKKVPSGRSMSGREDYNNAESAADPAGFRE
QVSVLFAEWYRICELPGTNDAAYTHYISQLQQNGLLKADDMSDRFFRILTELSVAHCLSS
ESLQSPQQLQHLSFIAIDMYAKLVVLIFKYCVVDQGSSKLLLLPKILAVTVRVIQKDAEE
KKASFNPRPYFRLFINWLLDLGSPDPLLDGSNFQVLTAFANAFHALQPLKVPGFSFAWLE
LVSHRSYMPKLLTLNLQKGWPFVQRLLVDLFKFLEPYLRNAELGEPVHFLYKGTLRVLLV
LLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISQS
PRILSEVDTALKGKLMKGDIDEYLKTRQQGSSFLAELKQRLLLSQGEAAQAGTRYNVPLI
NSLVLYVGMQAIQQLQAKTPSPHAPPMAQGASMDIFLVGAAMDIFQTLIADLDTEGRYLF
LNAVANQLRYPNNHTHYFSFVLLYLFAETNQEIIQEQITRVLLERLIVNRPHPWGLLITF
IELIKNPRYNFWNRSFTRCAPEIEKLFESVSRSCGGPKPLDDAMVSGGISDNAH
NT seq
7365 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttctctccaaccatttcgaaccagattcggttcttgcttcagagcttgaat
gattctaacttcgattctgtatttcgcgagctatgccagtttgttgactatgggagtgag
gggagtattttgcttctccagagctgtttggatcatgtgaattttcatgggggggacatg
caaaatgttcaatggaaaccagatattattgctgcaatcttcagatatttgttggataaa
ccaaatttcagtactgtgttatctgaagcactgagaagtacagtggttagtgaaggattt
cttcgagatttctttggtgcattaaacttctcagtttctgagaaaattgcgataggtctt
gctttgtcagattcagaaaatcttgatataagaacaagtgggcaaaacttctgcatgttc
cagattgaggaactgtgttcccatcctgcttccattgattctcaagagcagattcaagat
attgtaatgtttcttaaccggactgagggccttgcaacacatgtggattcctttatgcag
atgttatctttgttgcaactgaaagagaagacttcttttatattagctccgttgttttca
gatgattcacatgatgctagttctttgagtcatttggatctattctatgaatgcaaagaa
aatgattttgatgctgttctggcggagatagaaaaggagataagcatggcagatgttatg
aaagaactcggttatggatgcacggttaattcttcacattgcaaggaaatgttgtctctt
tttttacctttgaatgaagtcactcttgctaggattattgggacaattgcacgcacccat
attggtcttgaggacaaccaaaacatgtactcaacattctgctctgctcttggtagcagt
tcatcatctgatacatcgtggttgagctcctggaatattgatgttcttgtagactcaatt
aagcaacttgccccgggaactaattggattagtgtcatggaaaacctggatcatgagggg
ttctattttcctaacgaggatgcttttcgttttttcatgtctgtttatgcaaatgcgtgc
caggatccattcccgctccatgccatttgtgggtctgtctggaagaatgctgagggtcag
ctgtcattcctaaaatatgctgtttcatcaccacctgaaatattttccttcgcacattct
acaagacagatgacatatgttgatgctatacagggtcaaaagctttcatatggaaatgca
aaccaagcatggtcatgtctagacctcttggaggtgctttgtcaactagctgagaggggg
catgttgtttctatccgatcaatgctcgagtatcctcttaaacactgtcccgaagtcttg
cttcttggcatggcccatatcaataccacatttaatctcctacagtatgaagtatcttca
actgttctacccatgattgttggaaatgctattagaagtggtattgttctccaaatatgg
catatcaatcctaatcttgtgctgcgaggatttgtagatattcacagtgctgatcaagac
aacatgtcaagaattttgggcatttgccaggaacagaagattctttcatcagtgttggat
gcagccccattttatttcagtattaaactggctgcccttgcttctcggaaagaacatata
aatctcgagaagtggttaaatgataatctaagtacatacaaagatgtcttttttgaggaa
tgcctcaagttcttgaaggagataatgttcgatgcagcacaggatgtccctgctactcca
ttccggcatactggtgctatggtgaatgcttactcagagacaagttcaacaatattcaag
gtccttcaagcccattctgggcagattacatctcgtcagctttctgaggaaatgaaaaag
ttgcatgcagcatctgtgcatactaatcctagattgcagaatggtggaaccaccgattca
tctacttctgatggatatgcagatgatattgaggctgaagcaaactcctacttccatcag
atgttttctggtcagctgtccatagatgcgatggttcaaatgcttgctcgtttcaaggaa
tcttctgacaaaagggaacaatcaatttatgaatgcattgtagggaatctatttgaggag
tacaagttcttccccaagtatccagaaaggcagcttaaaattgcagctgtactcttcggt
tctctcataaagcatcagcttgtgacccatcttacccttggtattgctctccgttgtgtt
ttggatgcactccgtaaatcagctgattcaaaaatgttcgtttttggggtcaaggctttg
gagcagtttctggaccgcctagtagagtggccacagtattgcaatcatatcttgcagata
gcccatcttcgtggcacccattctgagcttgttgcattcattgagcgtgctcttgctagg
atatcttcaggccattctgaacccaatggtggcattagttctactgagcagcaccaagtt
tctacccaggctcccatggaaaatgtggaggcatctgaatccttgtggcagttaggggga
tctggcaccacacagcctgggcagcaactctcctctgctctccagcttcagcagcgacag
caaggttttcttgatgagagaccgagaacatctacaacttcagtaagctacatgaagccc
gttatatctcctgctgggcaagcttcacttgtttccacccaggatacgctgaataatcaa
aagctgcctgtctcccaatcattccagacagtttcatcgcagaacactgcaagtggtttg
gcaactgtgtcatcctcaactggttttcttcgtccttcccgaggaattgcatctactggt
atgcttagacagcattcatataatacagggtttggttctgctttgaacattgaaacactt
gttgctgctgctgagagaagggatactcccatagaggctcccgcatcggagattcaagac
aaaatactctttatgataaataacatatcggctgcaaatcttgaagctaaggcaaaagaa
tttactgagattcttaaagagcagtattatccatggtttgcacagtatatggtgatgaaa
agagcaagtattgagccgaatttccatgatctgtacttgaagttcctagacaaggttaat
tcaaaagcactgaataaggagattgtcaaagctacctacgagaactgcaaggttcttttg
agatcggagcttataaaatcaagttcagaagagcgttccttgctgaaaaatttaggcagc
tggcttgggaagttcactattggcagaaaccaagcactaagggctcgagaaattgatcct
aaagttttgataatagaggcatacgagaaagggctaatgattgcagtaattccatttacc
tcaaagattctggaaccatgccagggcagtctagcttatcagcctcccaatccatggact
atgggcatccttagtttacttgttgagatttatgcattgccaaatctgaaaatgaacctc
aagtttgatattgaggtcttatttaagaaccttggtgtggatatgaaagatgtaaaacca
acttctcttctgaaagatcgtgttcgggaagttgaaggcaatcccgatttttcgaacaag
gatattggggcatcccaagctcagatggttactgaagttaattcaggaattctatctaca
ttaggtcaagttgaactacagcctgaagttgttaatccatctcaccctggtcattcaaat
gtactatctcagtatgccactcctcttcatctggcttctggtccattaatggaagatgaa
aagatggcagcattaagcttatctgatcgccttccttctggtcaaggattgtcacaagtt
gctccatctcagacaccattctctgttagtcagttacccactccaatccctaatattgga
actcacgtaattgtcaaccagaagcttagtaatttgggcctacagctgcattttcagagg
attttgccagtcgccatggagagggctatcaaagagataatatctcctattgttcagcgt
agtgtcacaatagccatgcagacaacaaaggagctcgttttaaaggactatgcaatggag
tcggatgagagccgcatatataatgctgcacacttgatggtggcaagcttggctggaagt
ttagctcatgttacgtgcaaggaacctcttcgtggttcgatttcaagtcacctgaggaat
ttgctacaggccttaagtattgcaagtgaacttcttgaacaagctgtgcaacttgttaca
aatgataaccttgacctgggttgtgcagtaatcgaacaggctgcaacagagaaggcacta
caaagcattgatggagaaatagctcagcaactttctttaagaaggaagcacagagaaggt
gttggtccaacttattttgatgcgagtacttatacacaaggtcctatgggtgtggttcca
gaggctctccgccccaaacctgggcggttgtcccattcccaacagcgagtgtatgaggat
tttgttcggtttccttggcaaaatcaaccaagccagagttcaagcaccattgctgctggt
tcacctgtgtcatctggtggttcaattagctctggcctctctcgtgcttatggttcaatg
tcagggcagctcagttcagggatctattcgtctgtgcaagggggccaaggattcagtgct
gtgggacagcccatggatattatttctgaggagatggacgctgcttcaacacaattactg
agtgcttcctcacctcatattggggtgactgatggtgttatgcagcacacgtctgaaatc
aattctacggttgcttcttttcctccaagtgctggagcccctgaattgctttctgtggaa
ccctcaccttctgtgaaggattctggagccactacacaaccatcacctacaatttctgcc
gcagagcgcctaggaggtggcatgtcagaaccgttattgtccacaggagatgctttagaa
aagtacctgcttgtggcacagaagctggaggcttttgtagctaaagatgccagggatgca
gaaattcagggtgttattgctgaggttcctgaaattatactcaggtgcataagtcgagat
gaggctgcattggctgtggcccagaaggtttttaagagtttatatgagaacgcatccaat
agtgtacatgttggtgctcatcttgctattctggctgctattcgagatgtttgcaagctt
gttgtcaaggagctcacaagttgggttatttactcagatgaggagcggaagtttaacaaa
gaaataacagttggcttaatccgcagtgaactgctaaaccttgcagagtacaatgtccac
atggccaagcttattgatgggggaagaaataaggctgcaacagagttttccatttctctt
ctccaaacgttagtggttcaggaatcaggtgtcagtgtgtcagaactccacaatcttgtt
gatgctttggcaaagtttcagcttgcaatgagacctggatcacctgaatctttgcaacag
ttggttgagattgccaggaaccctgcttctaattccgctgctctgtctggtctagctgtt
ggcaaagatgataaggccaggcaatctagggacaaaaaggtaccttctggtcgttctatg
tctggtagggaagactataacaatgctgaatctgcagcggatcctgctggttttcgtgaa
caggtttctgtgctctttgctgaatggtaccgtatttgtgaacttcctggtacaaatgat
gctgcttatacccattatatttcacagctacaacagaatggattgcttaaggcagatgat
atgtcagatcgctttttccgcatccttacagaactttctgtggcacattgcctctcatct
gagtcactgcaatcacctcaacaactccaacatttatcttttattgctattgatatgtat
gcaaaacttgtagttttaatcttcaagtactgtgtggtggaccagggatcaagcaaacta
ctactactgcccaagatcctggctgtgactgttagagtcatccaaaaagatgcggaggag
aagaaggcatcatttaatccaaggccgtattttagattgttcattaactggctcttggat
cttggttctccagaccctttgctagatggttccaacttccaggtgttgactgcatttgca
aatgcttttcatgcattgcagcctcttaaagttcctggtttcagctttgcatggcttgag
cttgtaagtcacaggagctacatgccaaaattgcttactctcaaccttcagaaaggttgg
ccttttgttcaacgcttgctggtagatctgtttaaattcctggagccatacttgcgcaat
gctgaactgggagagccggttcactttctgtacaagggcactctgagggttctactggtt
cttctgcatgatttccctgagtttctatgtgattatcatttcagcttctgtgatgtcatt
cctcccagttgcatccagatgaggaatgttattttgagtgcatttccacggaatatgagg
ttgcctgatccctccactcccaacctaaagattgacctgctagcagagatcagccaatca
ccacgaatcttatctgaggttgatactgctctgaaaggaaagctaatgaagggcgacata
gacgagtatctcaagacaaggcagcaaggctcttcttttttggcagagctgaagcagaga
ctgctgctttctcaaggggaggcagcacaggctgggactcggtacaatgtacctttgatc
aactcccttgtactatatgttggaatgcaggctatccagcaacttcaggccaaaactcca
tcgccgcatgcaccaccaatggctcagggtgcttccatggatattttcttggttggtgct
gccatggatatattccaaactctgatagcggatttggatactgaagggcgttacctcttc
ctcaatgcagttgctaaccagctgcgctacccaaataaccatactcattacttctcattt
gtccttctttatttgtttgctgaaacaaatcaggaaatcatccaggagcaaataacaaga
gtgttgttggaacgcctgattgtcaaccgaccccatccctggggcttgctaattacattc
attgagctcatcaagaatcctaggtataacttttggaataggtcattcacaaggtgtgcg
ccagagatagagaaactgtttgaatcagtctcaagatcatgcgggggtcccaaacctttg
gatgatgctatggtttctggtgggatttctgacaatgcacattga
DBGET
integrated database retrieval system
