Nitrosococcus oceani: Noc_2611
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Entry
Noc_2611 CDS
T00281
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
noc
Nitrosococcus oceani
Pathway
noc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Noc_2611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noc03019
]
Noc_2611
03009 Ribosome biogenesis [BR:
noc03009
]
Noc_2611
Enzymes [BR:
noc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Noc_2611
Messenger RNA biogenesis [BR:
noc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Noc_2611
Ribosome biogenesis [BR:
noc03009
]
Prokaryotic type
rRNA helicases
Noc_2611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrA_inter
CMS1
AAA_30
UTP25
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ABA59064
UniProt:
Q3J7Y2
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All DBs
Position
2965264..2966766
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AA seq
500 aa
AA seq
DB search
MTSSTELLSFDSFAISAPVLQAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTA
AFAIPTLERLELSQKEPQVLVLVPTRELAIQVAEAFQSYARYLEDFHVLPIYGGQSMGNQ
LRQLKRGAHVIVGTPGRIMDHLRRKSLILTKLTTVILDEADEMLKMGFIEDVEWILKQVP
TKRQVALFSATMPTSVRNIASRHLQAPQDIKIKGETASLPAINQRYWLVSGLHKLDALTR
MLEAEEYDATIIFVRTKIATEELAKKLMARGYAAAALNGDIPQSSREKVVDQLKKNTIDI
IVATDVAARGLDVKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLS
AIKRATGQPLYEMQLPSHQQVIDRRIERFKQQVMNTLEKENLVAFRHLIQQWAQQEDLSP
LDIAAALTYSMQRERPLVGPPRSEPVTHGAPPPRKVAKHKSRKVAPAETTKRKKPYKKAI
KKQKDFRSLYLNNSHPPSTP
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgacatcttctacagaactcctatcttttgacagttttgccatcagcgcccctgttctg
caagccatcaaacaggtaggatacgaaacgcctaccctcattcaggcaagagctattcct
catcttttagcagggcatgacctggtggggcaggcccaaacaggcactggcaaaacagca
gcttttgccattcccaccttagaacggttggaattatcacagaaagagccgcaagtgctg
gtactcgtcccaacacgggaactcgctattcaggtagcggaagcctttcaaagttacgcc
cgctatctggaggattttcatgtccttcctatctacggcggccaatccatgggcaaccag
ttacgccaacttaaacgaggcgcccacgtcatcgtgggcaccccaggcaggatcatggat
catctgcggcgcaaaagtctgatcctaactaaattaacaacggtgatcctagacgaagcc
gacgagatgctaaaaatggggtttatcgaggacgtagagtggattttaaagcaagtgccc
acaaaacggcaggttgccctcttttccgctaccatgcccacttccgtgcgtaatatcgca
agccgtcatctacaagcgccccaggatattaaaatcaagggagaaactgcttctcttccg
gccatcaatcaacgctattggctagtctctggtttgcataaactagatgcactcacccgc
atgctggaggctgaggaatatgatgccacgattatttttgtccggactaaaatagcaacg
gaagagctggcgaaaaaactaatggcgcggggctatgcggcagcggcgctaaatggagat
atcccccagtcctcacgggaaaaagttgtcgatcagctcaaaaaaaataccattgacatc
attgtcgccaccgatgtggctgcccgtggactggatgtcaagcgcatcggccatgtggtc
aattacgatattccctacgatacgggaacctacatccaccgtattggccgcactggccgc
gcgggccgcacgggtaccgccactttgtttgttgcgccccgcgagcggcggatgttgagt
gctatcaaaagggcgacggggcaacctctctatgaaatgcagctacctagccaccaacag
gtcatagaccggcgtatcgaacgatttaagcagcaggttatgaacaccttagaaaaggag
aatctcgttgctttccgccatttaatccagcaatgggctcaacaagaagatctctccccg
ttagatatcgccgccgcattgacttattccatgcagcgggaacgccctctggtgggccct
ccacgctctgagccggtaactcatggcgctccccccccccgcaaggtggctaagcataaa
tccaggaaagtggcgcctgcggagacaacgaaaagaaaaaaaccctataaaaaggcaata
aaaaagcaaaaagattttcgtagtctttatcttaataatagccatcctccttccacaccg
tag
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