KEGG   Nocardiopsis sp. LDBS0036: UIS43_10275
Entry
UIS43_10275       CDS       T11195                                 
Name
(GenBank) LAGLIDADG family homing endonuclease
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
nocb  Nocardiopsis sp. LDBS0036
Pathway
nocb00230  Purine metabolism
nocb00240  Pyrimidine metabolism
nocb01100  Metabolic pathways
nocb01232  Nucleotide metabolism
Module
nocb_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
nocb_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Brite
KEGG Orthology (KO) [BR:nocb00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    UIS43_10275
   00240 Pyrimidine metabolism
    UIS43_10275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nocb03400]
    UIS43_10275
Enzymes [BR:nocb01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     UIS43_10275
DNA repair and recombination proteins [BR:nocb03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    UIS43_10275
SSDB
Motif
Pfam: Ribonuc_red_lgC LAGLIDADG_3 Ribonuc_red_2_N TSCPD Intein_splicing Ribonuc_red_lgN
Other DBs
NCBI-ProteinID: XEA87858
LinkDB
Position
complement(2447664..2453003)
AA seq 1779 aa
MTETTSGPAGRKGKGSRKGIRVRRVFTTPGTHPYDSLEWERRDVVMTNWRDGTVNFEQRG
VEFPSSWSMNATQIVTSKYFRGAVGTPEREWSLKQLIDRVVGVYTETGREHGYFASAEDA
EVFDHELKHALAHQLFSFNSPVWFNVGTNSKAQVSACFILSVDDTMESILDWYKEEGIIF
KGGSGAGVNLSRIRSSKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDV
DHPDIEDFVETKAREEHKIRALRDAGFDVDLGGDDMFSVQYQNANNSVRVSDAFMRAVES
GSDFGLTSRTTGEVVATVDAKELFQRMARAAWECADPGIQYDGTIQDWHTTPESGRISAS
NPCFPADQRVLTDRGHIPIGDLIKRAARGETFAVYTNDITAETDAQNAVVATIPTQYMVT
GTNEILELRFSDGSLLRCTPNHRLWTENRGWVHAEKLLSDDRVVRSFQYAPRSNPALRIP
RAALEAVRTVAALPSVRPLYLPEKWDEDPDLAHYLGWLVGDGSVGDQAVVTVYGTAEEQQ
NVLPRHQALIERLTGHRSKPSLQPNGTQQLRITRRTMVEFVRALGLGARAEDKSVPPSLF
EAPEETVLEFLQGLFDADGCAVDQKANGTRYIGLGSRSDQLLRDVQELLAPFGIASRVYR
TSEGKPDSFSYTRKDGSTVTYGSDGPFFDLRISAQSMQEFSALVNFSLEGKSEKLREALD
FRRMYRTRTTTRLFSRRSAGFETTYNLTEPRNHSYIVGGTVVANCSEYMSLDDSSCNLAS
INLLKFLREDDTFDVERFTALTELVITAMDVSITFADFPTEKIGETTRAYRQLGIGYANL
GALLMATGHAYDSEGGRAVAAAVTSLMTGTAYRRSAELAGVVGPYDGYRRNERAHKRVMR
KHAAANDDLRTVGTLEEPIHAAATREWAECLRIGERNGWRNAQASLLAPTGCLTGDSMVT
TDRGLVRLTELGDAYGPRWQDLSARVSTDEGPREATRFFVNGEEPTRRIVTRGGYRLQGT
HTHRIKVVSPRTGDWEWKRFADIAEGDVVPVQMGTLVGQPRRVVLPVLDQAYYTGDHDLF
VPEAVDEELAELVGYFMGDGSLHAKGIRMCVADTDEDVVERLRILAKGLFGLAPTVTAGQ
GYQEVTLSSVRLARWWKAAGFAKDLPGQDHSGKGWTPRVPSSVLETNDPAVYAAFLRGLF
EADGTVLEGVPSISTAHASFAGEVRTLLLTLGMASTTRTTRSGYGGDCHVVRLRNVDHAL
RFDETVGFLGDRKNKLVVQLESDRSAKGDRIVLPRQVWDELVPVGHAARGTVVQSLRKYG
GVARQLASAIHSETLDGRLGHALGYVFEEVGANEDGGVQPTYDISVPDNVTYVANGLVSH
NTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQAIPRALGNLGYQDEQIEAVVEYV
SENGHVVDAPGLRAEHYEVFDCAMGLRYIRPMGHVRMMAAVQPFLSGAISKTVNVPEEAS
VEDFEHIYFEGWRMGLKALAVYRDNCKVGQPLSTGGTWEKEAGPEAEAVEAPRPVRRRLP
KKRPSETTSFSVGGAEGYITAGSYPDDGLGEVFMKLGKQGSTLAGVMDAFSIAISIALQY
GVPLETYVEKFTNMRFDPAGMTDDPDIRMAQSVVDYIFRRLALDHLPYEERAALGVLSAA
ERQAQVAGEDPAQVATQVESYAQSAATRGADAPEEVPAASAREPHAAAERPTRAHSTAEL
MEGKGFVADAPLCMTCGTKMRPSGSCYACEGCGATSGCS
NT seq 5340 nt   +upstreamnt  +downstreamnt
atgacggagaccaccagcggtccggccggacgcaagggcaagggcagccgcaaggggatc
agggtgaggcgcgtcttcaccaccccgggcacgcacccctacgactccctggagtgggag
cgccgcgacgtcgtcatgaccaactggcgcgacggcacggtcaacttcgagcagcgcggg
gtggagttcccctcctcctggtcgatgaacgccacccagatcgtgacgagcaagtacttc
cgcggcgcggtgggcacccccgaacgcgagtggagcctcaaacagctcatcgaccgcgtc
gtcggcgtctacaccgagaccggccgcgaacacggctacttcgcctccgccgaggacgcc
gaggtcttcgaccacgagctcaagcacgccctcgcccaccagctgttcagcttcaactcc
ccggtgtggttcaacgtcggcacgaactcaaaagcccaggtcagcgcgtgttttatcctg
tccgtggacgacaccatggagtcgatcctggactggtacaaggaggaggggatcatcttc
aagggcgggtccggcgcgggtgtgaacctgtcgcgcatccgctccagcaaggaactgctc
tcctccggcgggaccgcgtcaggccccgtctccttcatgcgcggcgccgacgcctcggcc
gggaccatcaagtccggcggcgccacccgccgggccgcaaagatggtcgtcctggacgtc
gaccaccccgacatcgaggacttcgtcgagaccaaggcccgcgaggagcacaagatccgt
gccctgcgcgacgccgggttcgacgtcgacctcggcggtgacgacatgttcagcgtccag
taccagaacgccaacaactccgtgcgggtctccgacgcgttcatgcgcgccgtggagagc
ggctccgacttcggcctgacctcccgcaccaccggcgaggtcgtcgccacggtggacgcc
aaggagctgttccagcgcatggccagggccgcctgggagtgcgcggatccgggcatccag
tacgacggcacgatccaggactggcacaccacgcccgagagcggacgcatcagtgcgagc
aacccgtgttttccggctgatcagcgcgtgctgacggatcgcggacatataccgatcggt
gatctgatcaagcgcgcggcccgaggcgagaccttcgccgtgtacaccaacgacatcacc
gctgagacggacgcccagaacgctgtggtggcgacgatccccacccagtacatggtcacg
gggaccaatgagatcctcgaactgcgtttctctgacggctctctcctgcgctgcaccccc
aaccaccgtctgtggaccgagaaccgcggctgggtgcacgctgagaagctgctctccgat
gaccgggtcgtccgttccttccagtacgcgcctcgttcgaacccggcgctgcggattccc
cgtgcggcgctggaagccgtacggacggtggcggccttgccgagtgtccgtcctctgtac
ctgccggagaagtgggacgaggatcccgacctcgcgcactacctcggctggctcgtgggg
gacggctcggtcggtgatcaggcggtggtgaccgtctacggtacggctgaggagcagcag
aacgtccttcctcggcaccaggcgctcatcgagcgtctcaccgggcaccggagcaagccg
agcctccagccgaacgggacccagcagctcagaatcacgcgtcgcacgatggtcgagttc
gtccgagccctgggcctgggcgcccgcgcggaggacaagtcagtgccgccgtcgctcttc
gaggcacccgaggagaccgtgctggagttcctccaagggctgttcgacgcagacgggtgc
gcggtggaccagaaggccaacggaacgcgctacatcggtctgggcagccgttcggaccag
ctcctgcgcgatgtccaggaactcctcgccccgtttggcattgccagccgtgtctacagg
acatccgagggcaagccggattcgttctcctacactcgcaaggatgggtccacggtcacc
tatggcagtgacggtccgttcttcgacctgcggatctcggcccagtccatgcaggagttc
tccgccctcgtcaacttctccctggagggaaagagcgagaagctccgagaggcgctggac
ttccgccgtatgtacaggacgaggacgactacacgcctgttctccagacgttccgcggga
ttcgagaccacatacaacctcaccgagccgcgcaaccactcctacatcgtgggcggcacc
gtcgtcgccaactgctcggagtacatgtccctggacgactcgtcctgcaacctggcctcg
atcaacctgctgaagttcctgcgcgaggacgacaccttcgacgtggagcgcttcaccgcg
ctcaccgagctggtcatcacggcgatggacgtctccatcaccttcgccgacttccccacg
gagaagatcggcgagaccacccgcgcctaccggcagctcggcatcggctacgccaacctg
ggcgccctgctcatggcgaccggccacgcctacgactccgagggcgggcgcgccgtcgcc
gccgcggtgacctcgctgatgaccggcaccgcctaccggcgcagcgccgagctggccggg
gtggtcggcccctacgacggctaccggcgcaacgagcgggcccacaagagggtcatgcgc
aagcacgccgccgccaacgacgacctgcgcaccgtcggaaccctggaggagccgatccac
gccgcggccacccgcgagtgggccgagtgcctcaggatcggcgagcgcaacggctggcgc
aacgcccaggcgagccttctcgcgcccaccggctgcctcaccggcgactccatggtcacc
accgaccggggactcgtccggctcaccgaactgggcgacgcctacgggcccaggtggcag
gacctctccgcccgggtctccacggacgaggggccccgcgaggcgacgaggttcttcgtc
aacggagaggagccgacccggcgtatcgtgaccaggggcgggtaccggctccagggcacg
cacacccaccggatcaaggtggtctccccccggaccggtgactgggagtggaagcgcttc
gccgacatcgccgagggcgacgtcgttccggtccagatgggcaccctggtcgggcagccc
cgccgtgtggtgctgccggtcctggaccaggcctactacacgggagatcacgacctgttc
gtgcccgaggcggtggacgaggaactcgcggagctcgtcggttacttcatgggcgacggc
agcctgcacgccaagggcatccgcatgtgcgtcgccgacaccgacgaggatgtcgtcgag
cgcctgcgcattctggccaaggggctgttcggcctcgcgcccacggtgaccgccggacag
ggctaccaggaggtcaccctgtcgtcggtccgcctggcccggtggtggaaggcggcgggg
ttcgccaaggacttgcccggtcaggaccactccggcaagggctggaccccccgagtgccc
tcctcggtcctggagaccaacgatccggcggtgtacgcggccttcctgcgcggtctcttc
gaggcggacggcaccgtcctggagggtgtgccgagcatctccaccgcgcacgcctccttc
gccggagaggtccgcacgctgctgctgaccctgggtatggcctccaccacgcgcacgacc
cggagcgggtacggcggggactgccacgtggtccgcctgcgcaacgtcgaccacgccctg
cgcttcgacgagaccgtcgggttcctgggcgaccgcaagaacaagctcgtcgtccaactg
gagtcggaccgctcggccaagggcgaccggatcgttctgccccgccaggtgtgggacgag
ctggtaccggtcgggcacgccgcgcgggggacggtcgtgcagtcgctgaggaagtacggc
ggcgtggcccggcagctggcctcggccattcactccgagacgctcgacggcaggctggga
cacgccctcggctacgtcttcgaggaggtcggcgccaacgaggacggcggcgtgcagccg
acctacgacatctcggtgcccgacaacgtcacctacgtggccaacggcctggtcagccac
aacaccatcggcttcatgatggactgcgacaccaccggtatcgagccggacttctcgctg
gtcaagttcaagaagctggtcggcggcggctccatgcagatcgtcaaccaggccatcccg
cgcgcgctgggcaacctcggctaccaggacgagcagatcgaggccgtcgtcgagtacgtc
tccgagaacggccacgtcgtggacgcgcccggcctgcgcgccgagcactacgaggtgttc
gactgcgcgatggggctccgctacatccggcccatgggccacgtgcggatgatggccgcg
gtacagcccttcctgtccggcgcgatctccaagacggtgaacgtgccggaggaggcctcg
gtcgaggacttcgagcacatctacttcgagggctggcggatgggcctgaaggcgctcgcc
gtctaccgcgacaactgcaaggtgggccagccgctgtccaccggcgggacgtgggagaag
gaggccgggcccgaggcggaggccgtcgaggcgccccgcccggtccgccgccgcctgccc
aagaagcgaccgagcgagaccacgtcgttctccgtgggcggggccgagggctacatcacc
gcgggctcctacccggacgacggtctgggcgaggtgttcatgaagctcggcaagcagggg
tccaccctggccggggtgatggacgccttctccatcgcgatctccatcgccctgcagtac
ggggtcccgctggagacctacgtggagaagttcacgaacatgcggttcgacccggcgggc
atgaccgacgatccggacatccgcatggcccagtcggtggtggactacatcttccgccgc
ctggccctggaccacctgccctacgaggagcgggccgcgctgggggtgctgtcggccgcc
gagcgccaggcgcaggtggcgggcgaggaccccgcgcaggtcgccacgcaggtggagtcc
tacgcccagtccgccgccacccgcggggcggacgccccggaggaggtcccggcggcctcc
gcgcgggagccgcacgcggcggcggagcggccgacccgggcgcactccaccgcggagctg
atggagggcaagggcttcgtggcggacgcgccgctgtgcatgacctgcggtaccaagatg
cgcccgtcgggcagctgctacgcctgcgagggctgcggggccaccagcggttgcagctga

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