Nocardia otitidiscaviarum: FOH10_03410
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Entry
FOH10_03410 CDS
T06114
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nod
Nocardia otitidiscaviarum
Pathway
nod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOH10_03410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nod03019
]
FOH10_03410
03009 Ribosome biogenesis [BR:
nod03009
]
FOH10_03410
Enzymes [BR:
nod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOH10_03410
Messenger RNA biogenesis [BR:
nod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOH10_03410
Ribosome biogenesis [BR:
nod03009
]
Prokaryotic type
rRNA helicases
FOH10_03410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QDP77936
UniProt:
A0A378Y874
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All DBs
Position
774637..776412
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AA seq
591 aa
AA seq
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MSTSPADSVSIDDERDATGPSFADLGIDDRILRAIADVGYESPSPIQAATIPPLLDGADV
VGLAQTGTGKTAAFAIPILMGLQVSGKSPRALVLAPTRELAIQVAEAFERYSAHMPDLHV
LPIYGGQNYAVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLTQLQYLVLDEADEMLKMGF
QDDVERILRDTPESKQVALFSATMPTAIRKISKQYLHDPVEITVKAKTATNTNITQRWVQ
VSYQRKLDALTRILEVEPFEAMIIFVRTKQATEELAEKLRARGYSAAAINGDIVQAQRER
TIGQLKSGALDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAL
LFVAPRERRLLDSIERATRQPLTEMQLPSVEDVNAQRVAKFGDMITENLSAANLALFRKL
IEDYEREHNIPLVDIAAALAVGSHDGDNFFMEPDPEPERRPRERGSRSFEGDRPRREGPS
RHRATGAEMATYRISVGKRHKVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADL
SSETLDALRRTRISGQLIQLQLDSGPPGHRPLSRAPRRDGGKRFDRRKPRA
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctcaccggccgacagcgtttcgatcgacgacgagagggacgcgaccggcccg
tccttcgccgatctgggcatcgatgaccgcattctgcgggccatcgccgatgtcggctac
gagtcgccgtcgcccatccaggcggcgaccatcccgccgctgctcgacggcgcggacgtg
gtggggctcgcgcagaccggcaccggcaagaccgccgcgttcgcgattccgatcctcatg
ggcctgcaagtctccggcaaatcgccgcgggcgctggtcctggccccgacccgcgagctg
gccatccaggtggccgaggcgttcgagcgctactccgcgcacatgcccgacctgcatgtg
ctgcccatctacggcggccagaactacgccgtccagctgtccgggctgcgccgcggcgcg
caggtcgtggtcggcacgcccggtcgcgtgatcgaccacctggaacgcggcaccctggac
ctgacccagctccagtacctcgtgctcgacgaggccgacgagatgctgaagatgggcttc
caggacgacgtggagcgcatcctgcgcgacacgcccgagtccaagcaggtggcgctgttc
tcggcgaccatgccgaccgccatccgcaagatctccaagcagtacctgcacgacccggtg
gagatcacggtcaaggccaagacggccaccaacaccaacatcacccagcgctgggtgcag
gtgtcctatcagcgcaagctcgacgcgctgacccgcatcctcgaggtcgaacccttcgag
gccatgatcatcttcgtgcgcaccaagcaggccaccgaggagctggccgagaagctgcgc
gcccgagggtattccgccgccgccatcaacggcgacatcgtgcaggcgcagcgtgagcgc
accatcggacagctcaaatcgggcgcgctggacatcctcgtcgccaccgacgtcgccgcc
cgcggcctcgacgtggagcgcatctcgcacgtcgtcaactacgacatcccgcacgacacc
gagtcctacgtgcaccgcatcggccgcaccggccgcgccggccgcagcggtgaagcgctg
ctgttcgtcgcgccgcgcgaacgccgcctgctcgactccatcgaacgcgccacccgccag
ccgctcaccgagatgcagctgcccagcgtggaggatgtgaacgcgcagcgcgtcgccaaa
ttcggcgacatgatcaccgagaacctgtccgcggcgaacctggcgctgttccgcaaactc
atcgaggactacgagcgcgagcacaacatcccgctggtggatatcgccgccgcgctggcc
gtcggctcgcacgacggcgacaacttcttcatggaacccgatccggagcccgaacgccgc
ccccgcgaacgcggctcccgctccttcgagggtgaccgcccgcgccgcgagggcccgtcc
cgccaccgcgcgaccggtgccgaaatggccacctaccgcatctcggtcggcaagcgccac
aaggtggtgcccggcgccatcgtcggtgccatcgccaatgagggcggcctgcgccgcagc
gatttcggccacatcagcatccgccccgaccacagcctggtcgaactccccgccgacctg
tcctcggagaccctggacgcgctgcgccgcacccgcatcagcggccagctcatccaactc
cagctcgactccggcccgcccggacaccggcccctgagccgcgccccccgccgcgacggc
ggtaagcgcttcgaccgccgcaaaccccgcgcttga
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