Novosphingobium sp. Gsoil 351: GKE62_09425
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Entry
GKE62_09425 CDS
T06443
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nog
Novosphingobium sp. Gsoil 351
Pathway
nog03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nog00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GKE62_09425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nog03021
]
GKE62_09425 (rpoC)
03400 DNA repair and recombination proteins [BR:
nog03400
]
GKE62_09425 (rpoC)
Enzymes [BR:
nog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GKE62_09425 (rpoC)
Transcription machinery [BR:
nog03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GKE62_09425 (rpoC)
DNA repair and recombination proteins [BR:
nog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GKE62_09425 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
YqfD
Motif
Other DBs
NCBI-ProteinID:
QGN54740
UniProt:
A0A6I5WTS0
LinkDB
All DBs
Position
complement(1961895..1966202)
Genome browser
AA seq
1435 aa
AA seq
DB search
MNDLTKFTNPVAKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERILYFESYVVIEPGLTPLERYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKHMLMSLDLVQERDDLMEDLRTTKSELKPKKIIKRLKVVESFIDSGNKPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMDREGEPGEGMMMSDMAEVHHALAA
GAVTLHSKIVARVPQTDEKGQQYMRRFETTPGRMLLGECLPQSHTVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMTLGFRNAFKAGISFGKDDMIIPDSKVELVGETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDKVADAMMDEIKATPKDEKGRQKPVNSIYMM
SHSGARGSPTQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVVVEDCGTERALEMRAIVQGGTTIASLGERILGRTLA
EDLVDSKSGEVIAKDGQLLDEAAILKIEAAGIQGARIRSPLVCAAEQGVCGKCYGRDLAR
GTPVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGAAQVNETSHLEAIADGTIVHRDIPTI
IDKRGRRLSLARNGEIVVMDNEGRERALHRVPYGTHLLQENGAKVALGERVAEWDPFTTP
VITDKAGTIRYQDLIDGRTLTEQVDEATGIAQRVVTENRGIGRAKKEDYRPRLTLHDEDS
GESARFMMAPGTTLSVEDGQQVSAGDVLARASREAAKTRDITGGLPRVAELFEARKPKDN
SIIAKVAGRIEFVRDYKAKRKIAIVPEEGDPVEYLIPKSRVIDVQEGDFVKKGDNLISGS
PDPHDILEVMGVEALAEFLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTL
LAGEQLDYEEMNEYNAKLTKGQKPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTQA
AVEGKTDSLIGLKENVIVGRLIPAGTGAGMNRMRVAATSRDAALRAAYRKLQESLIAPAT
AAEEHAAELAQGPEAAIGDDVLAMVEGETHGTDADAGDYLLADGDAAHIGEGEAE
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgaccaaattcaccaacccggtggccaagcccgagaccttcgaccagatc
cagatcggtctggcctcgcccgagcgcatccgctcgtggtccttcggcgagatcaagaag
cccgagacgatcaactaccggaccttcaagcccgagcgcgacgggctgttttgcgcccgc
atcttcgggccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaggtcacggtcaccaaggtccgccgtgag
cggatgggccacatcgagctcgccgcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcggatcggcctcctcctcgacatgcagctcaagcagctcgagcggatcctctac
ttcgagagctacgtcgtgatcgagccgggcctgaccccgctcgagcgctaccagctgctc
accgaggacgaactgctcgatgcgcaggacgagtacggcgaggacgcgttcagcgccggg
atcggcgccgaggcggtcaagcacatgctgatgagcctcgacctcgtccaggaacgcgac
gacctgatggaagacctgcggaccaccaagtccgagctcaagcccaagaagatcatcaag
cgactgaaggtcgtcgaaagcttcatcgattcgggcaacaagcccgaatggatgatcctc
gacgtcgttccggtcatcccgcccgaactgcgcccgctggtgccgctcgatggcggccgc
ttcgcgacctcggatctcaacgatctgtaccgccgcgtgatcaaccgcaacaaccggttg
aagcgcctgatcgagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctc
caggaagcggtggacgcgttgttcgacaacggccgccgcggccgcgtgatcaccggcgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcggggcgttcggtgatcgtcaccgggccc
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccggctcgacgccaagggcctgtcgatgacgctcaagcaggccaagaag
tgggtcgaaaaggagcgcaaggaagtctgggacatcctcgacgaggtgatccgcgagcat
cccgtgatgctcaaccgcgcccccacgctccaccgcctgggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggcgatccagctccacccgctggtctgctcggcgttcaacgcc
gacttcgacggcgaccagatggcggtccacgtgccgctgagcctcgaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctcagccccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtcctggggctgtactacctgtcgatggaccgcgagggt
gagccgggcgagggcatgatgatgtccgatatggccgaagtgcaccacgcgctcgccgcg
ggggcggtgacgctgcactccaagatcgtcgcgcgcgtgccgcagaccgacgagaagggg
cagcagtacatgcgccgcttcgagacgaccccgggacggatgctgctgggcgaatgcctg
ccgcagagccacaccgtgccgttcgacgtcgtcaaccgcctcctcaccaagaaggagatc
ggcgacgtcatcgaccaggtctatcgccacaccgggcagaaggacaccgtcctgttcgcc
gacgcgatcatgacgctgggcttccgcaacgcgttcaaggcggggatcagcttcggcaag
gacgacatgatcatccccgacagcaaggtcgagctcgtgggtgagaccaaggcgctcgtc
gccgattacgagcagcagtatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgctgcggcgacaaggtcgccgacgcgatgatggacgagatc
aaggccacgccgaaggacgagaagggccgccagaagccggtcaactcgatctacatgatg
agccattcgggcgcgcgcggttcgccgacgcagatgaagcagcttgcgggcatgcgcggg
ctgatggccaagccttcgggcgagatcatcgagaccccgatcatctcgaacttcaaggaa
ggcctgaccgtccttgaatacttcaactcgacgcacggcgcccgcaagggcctcgcggac
accgcgctgaagaccgccaactcgggctacctcacccgccgcctggtcgacgtgtcgcag
gattgcgtcgtcgtcgtcgaggattgcgggaccgagcgcgcgctcgagatgcgcgcgatc
gttcagggcggaactaccatcgcctcgctcggcgagcgcatcctgggccgcacgctggcc
gaggatctggtcgattcgaagtcgggcgaagtcatcgccaaggacggccagttgctcgac
gaagccgcgatcctcaagatcgaggccgcgggcatccagggcgcgcggattcgctcgccg
ctggtttgcgccgccgagcagggcgtgtgcggcaagtgctacgggcgcgatctcgcccgc
ggcaccccggtcaacatcggcgaggctgtggggatcatcgccgcgcagtcgatcggtgag
ccgggcacgcagctgacgatgcggaccttccacatcggcggcgcggcgcaggtcaacgag
accagccacctcgaagccattgcggacggcaccatagtccaccgcgacatcccgacgatc
atcgacaagcgcggccggcggctcagcctggcccgcaacggcgagatcgtggtgatggac
aacgagggccgcgagcgcgcgctccaccgcgtcccctatggcacgcatctcctccaggag
aacggcgccaaagtcgcgctgggcgagcgcgtcgccgagtgggatccgttcaccaccccg
gtgatcaccgacaaggccggcacgatccgctatcaggacctgatcgacggccgcacgctc
accgagcaggtcgacgaagccaccggcatcgcccagcgcgtcgtcaccgagaatcgcggc
atcggccgggccaagaaggaggactaccgtccccgtctgaccctgcacgacgaggattcg
ggcgagagcgcgcgcttcatgatggcgccgggcacgaccttgtcggtcgaggacggccag
caggtctcggccggcgacgtgctcgcccgcgccagccgcgaagccgccaagacccgcgac
atcaccggcggtctgccgcgcgttgccgagctgttcgaggcgcgcaagcccaaggacaac
tcgatcatcgccaaggtcgccggccggatcgagttcgtccgcgactacaaggccaagcgc
aagatcgcgatcgtcccggaagagggcgatccggtcgagtacctgatccccaagagccgc
gtgatcgacgtccaggaaggcgatttcgtcaagaagggcgacaacctgatctcgggctcg
cccgatccgcacgacatcctcgaagtcatgggggtcgaggcgctggccgagttcctcgtg
gccgagatccaggaagtctaccggctccagggcgtgaagatcaacgacaagcacatcgag
gtgatcgtccgccagatgctccagaaggtcgagatcaccgacggcggcgacaccacgctg
ctggccggcgagcagctcgattacgaggaaatgaacgagtacaacgccaagctgaccaag
ggccagaagcccgccgagggcaagccggtgttgctgggcatcaccaaggcgagcctgcag
acgcgcagcttcatctcggcggcttcgttccaggagaccacccgcgttctcacccaggcc
gcggtcgaaggcaagaccgacagcctgatcgggctcaaggagaacgtgatcgtcgggcgc
ctgatcccggcgggcacgggtgcggggatgaaccgcatgcgcgtggcggcgaccagccgc
gacgccgcgctgcgcgccgcctaccgcaagctccaggaaagcctgatcgcgcccgcgacg
gcggccgaagagcacgccgccgaactcgcccagggtccggaagcggcgatcggcgacgac
gtgctggcgatggtcgagggcgagacccacggcaccgatgccgacgccggcgactacctg
ctggccgatggcgacgccgctcacatcggcgagggcgaggccgagtaa
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