Novosphingobium sp. EMRT-2: FA702_17050
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Entry
FA702_17050 CDS
T06038
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nor
Novosphingobium sp. EMRT-2
Pathway
nor03410
Base excision repair
nor03430
Mismatch repair
nor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FA702_17050 (recJ)
03430 Mismatch repair
FA702_17050 (recJ)
03440 Homologous recombination
FA702_17050 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nor03400
]
FA702_17050 (recJ)
DNA repair and recombination proteins [BR:
nor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FA702_17050 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FA702_17050 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FA702_17050 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
QCI95053
UniProt:
A0A4D7DE60
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All DBs
Position
complement(3512582..3514357)
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AA seq
591 aa
AA seq
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MIPISAVTHSFSGLAWRWRGGNMDLGGWHGSLADDLVNQLLLSRGVAREDLERHRRPTLR
DFMPDPSLFRDMDAAAERLASAVTAREAITVYGDYDVDGATSAALLIRLLRDLGVEARAY
IPDRLLEGYGPSGEALVRLAREGSSLIVTVDCGAMAHEALAAAHAEGVDVIVVDHHKCPP
ELPITAALVNPNRLDESDEAALHGHLAAVGVAFLLAVATVRTLRARGYFESRPAPDLMRL
LDLVALGTVADVAQLKGLNRALVAQGLKVMARRENTGLAALIDASRLNRAPTCSDLGFAL
GPRINAAGRIGDSSLGVRLLTTNDADEARDIATRLSMLNDERRAIEQAVQEAAEMQVDGQ
HNRAVNVLAGEGWHPGVIGIVAGRIKEKTGKPTLVIALDADDAGNGKGSGRSIAGVDLGA
AIIAARENGLLVAGGGHAMACGLTIDPAALPRLADWLDERLARDVASARASQSLLLDLSL
NPGGLTPDLVTTLEAGGPYGVGWPGPRIAVGPVRLVKCDLVGTDHVRMVASGADGRSFKA
IAFRAAASELGQTLLHGVRGRQLWLAGRARTDDWGSRPAAELHVEDAAFAD
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgatttccgctgtcacccattccttctccggcctcgcttggcgctggcgcggc
ggcaacatggaccttggcggctggcacggcagcctggccgacgatctcgtcaaccagctt
ctcctgtcgcgcggcgtcgcgcgcgaggatctggagcgccaccgccgccccaccctgcgc
gatttcatgcccgacccctcgctgttccgcgacatggacgcggcggcggaaaggctggcc
tccgccgtcaccgcgcgcgaggcgatcaccgtctatggcgattacgacgtcgatggcgcc
accagcgccgcgctgctgatccgcctgctgcgcgaccttggcgtggaggcgcgcgcctat
atcccggatcgcctgctcgaaggctatggcccatcgggcgaggcgctggtccggttggcg
cgcgaagggtcctcgctgatcgtgacggtcgattgcggggcgatggcgcacgaagcgctg
gccgccgcccatgccgaaggcgtggacgtgatcgtggtcgatcaccacaaatgtccgccc
gagcttccaatcaccgccgcgctggtcaatccgaaccggctggacgagagcgacgaggcc
gccctgcacggccatcttgccgccgtcggcgtcgcgttcctgctggcggtcgccacggtc
cgcacgctgcgcgcgcgcggctatttcgagagccgcccggcgccggacctgatgcgcctg
ctcgatctggtcgcgctgggcaccgtggccgacgtggcgcagctgaaggggctcaaccgc
gcgctggtggcgcagggtctcaaggtcatggccaggcgcgagaacacgggcctggccgcg
ctgatcgacgccagccgtctcaatcgcgcgcccacctgcagcgatctcggcttcgcgctc
ggcccacgcatcaacgcggcggggcgcatcggcgattcctcgctcggcgtgcggctcctc
accaccaacgatgccgacgaggcgcgcgacatcgcgacgcggttgtcgatgctcaacgac
gaacggcgggccatcgaacaggcggtgcaggaagcggccgagatgcaggtcgatggccag
cacaaccgcgcggtcaatgtccttgccggcgaaggctggcaccccggcgtgatcggaatc
gtggccggccgcatcaaggaaaagaccggcaagcccacgctggtcatcgcgctcgacgcc
gacgacgccggcaacggcaagggatcgggccgttcgattgcgggtgtggacctgggcgct
gcgatcatcgccgcgcgcgagaacgggctgctggtcgcgggcggcgggcatgccatggcc
tgcggcctcactatcgacccggcggccctgccccggctggccgactggctggacgaacgg
ctggcgcgcgatgtcgcttcggcgcgcgcctcgcaatcactgctgctggacctgtcgctc
aaccccggcggactgacgcccgatctcgtcaccacgctcgaagccggcgggccttacggt
gtgggctggccggggccgcgcatcgccgtggggccggtgcggctggtcaagtgcgacctc
gtcggcaccgatcacgtccgcatggtggcaagcggggccgatggccggtcgttcaaggcc
atcgccttccgcgccgccgccagcgagctggggcagacgctgctgcatggcgtcaggggc
cgccagctctggcttgccgggcgcgcgcggaccgatgactggggtagccgccccgccgcc
gaattgcacgtcgaggatgcggcattcgccgactga
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