Nitrosopumilus oxyclinae: C5F49_06495
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Entry
C5F49_06495 CDS
T06689
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
nox
Nitrosopumilus oxyclinae
Pathway
nox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5F49_06495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nox03019
]
C5F49_06495
03009 Ribosome biogenesis [BR:
nox03009
]
C5F49_06495
Messenger RNA biogenesis [BR:
nox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C5F49_06495
Ribosome biogenesis [BR:
nox03009
]
Prokaryotic type
rRNA helicases
C5F49_06495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Helicase_C_2
CMS1
AAA_30
SUKH_5
Motif
Other DBs
NCBI-ProteinID:
QLH05001
UniProt:
A0A7D5RB40
LinkDB
All DBs
Position
1122020..1123336
Genome browser
AA seq
438 aa
AA seq
DB search
MTKFKDLGLSDDVLKGITDQGFEDAFPIQEAVIPVLLSGRDVVGQAHTGSGKTAAFALSM
LEKIQPKQGIQGLIMAPTRELAMQISDEIKKFGKHTGIRIATVYGGQGMGIQLDALHRGV
EIVVATPGRLIDHLKRGSIELRDISHIVLDEADTMLDMGFVDDISFILDLAPEDRVMSLF
SATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIKPVKGQ
IIVFCSTKYRTRDVAKFLHQEKYNAVAIEGDMSQHRREQSMGKFRSGKADILVATDVASR
GIDVPRVELVVNYDVPNQEMAYFHRIGRTARAGAKGRAITFVSYSSVGDWNLVKRQIKVP
ITDLNQEMGIQISIPDPLKRQTPSRRYGGQSRSNYSRGGRSGGYGGSRGGGNPRDDRSRR
RSSDRDGNKNSYGGRSRW
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttaaagatctaggattaagcgacgacgtgctgaaaggaattactgatcag
gggtttgaagatgcatttccaattcaagaagcagtaatcccagttttactttcaggaaga
gatgttgtgggacaagcacatactggttcaggaaaaactgcagcatttgcattatcaatg
ttagaaaaaattcaacctaaacaaggaattcaaggtttaatcatggcaccaacaagagaa
ttggccatgcaaatcagtgatgaaatcaaaaaatttggtaaacatacaggaattagaatt
gcaacagtctacggaggacaaggaatgggaattcaattagatgcacttcatagaggtgtt
gaaattgttgttgccactccaggtagactaattgaccatctcaaaagaggctcaattgaa
ctacgagatatctctcacattgttcttgatgaagcagatacaatgctagacatgggattt
gtcgatgatatttcatttattttagatttagctcctgaagatagagtaatgtcattgttt
tcagcaacaatgccaactgagattttaagattatcagaagaatatttgaacaatccaaaa
caattcttactggatgcagatgatcttagtggagaaggaatagaccaatcatatttagta
attaaagaccgtgacaaattcaagtatctaattgatttcatcaaaccagtcaaaggacaa
atcatcgtattttgttcaacaaaatatagaaccagagatgttgcaaaattcctccatcaa
gaaaaatacaatgcagtggcaattgagggagacatgtcacagcatagaagagaacaatct
atgggtaaatttaggagcggtaaagcagacattcttgttgcaacagatgtagcttcaaga
ggaatcgatgtacctagagtagaactagtagtaaattatgatgtgccaaatcaagagatg
gcatattttcatagaattggaagaactgcaagagctggtgcaaaaggaagagcaatcaca
tttgtatcatattcatcagtaggagattggaatttagtcaaacgtcaaatcaaagttcca
attacagatttaaatcaagaaatgggaattcaaatttcaattccagacccactaaaaaga
caaactccatcaagaagatatggagggcaatcaagatctaattattccagaggcggacgt
tctggcggatatggaggttctagaggaggaggcaatccaagagacgatagaagtagaaga
agaagtagtgatagagatggaaacaaaaatagctacggcggacgtagtagatggtaa
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