Neofusicoccum parvum: UCRNP2_4596
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Entry
UCRNP2_4596 CDS
T03126
Name
(GenBank) putative ccr4-not transcription complex subunit protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
npa
Neofusicoccum parvum
Pathway
npa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCRNP2_4596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_4596
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
UCRNP2_4596
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
UCRNP2_4596
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Pyrophosphatase
TetR_C_21
Motif
Other DBs
NCBI-ProteinID:
EOD48665
UniProt:
R1GAR7
LinkDB
All DBs
Position
Unknown
AA seq
2088 aa
AA seq
DB search
MEVFSKYFRRLLQSNAPQIFPGSAKGGDNSGSYGLLVEEMHKITRDPQQAYKIAESIDTT
EGDLFRDFDLSTFMEHFKLDPVAKTTLALACKTTSKSDLRTKADAILSNNYQNFLMTLVN
SVPDSQDDISPAILATVIDRLAQDPPRTWNDDSKNNLLFAIRAKYDKSTGILPPDVTAAL
HMFELLENQNPLIKHVQRAGPRSTSSLDSCKEMLASVETRDISYQQVANALLFMAITQNG
QAYNASNFVAALREHRAGQRLDWQDVVHSFDREGLKVTSQHFLALYNAFLPLAQEYENFD
IQLLWGGSWSNQDTQLSFVVAFLACSPEDLDVTQVPRLRKAFTLEQFEDASEVVKERAKE
VVKHPLVSLDATAALFNIIFRSQETYNIAQRSQIPQTVINQNTDIFVVAASAVPKPWVGL
QEMAMRQLFGPFVEKRVPNVYSFALHGLWKQDSIWVAARFLDFYNANPLSLTTIMEHAAE
HVWTQDLVALNSDMSLDLAALAHREGLFDLEPWAQDTLRQIPVFPRVLASFLNNKAETDL
QAQREGVPPANIPLAVKTVHPLLGFLQGHLPDEELVSLQRICIGAYPRLINYGEGFDELI
DANGKDGNAISPEADRKMQEHYKNMYSGESDVRHIIEELQKYKTSEDPADQDLFACMIHG
LFDEYNCFGEYPLEALATTAVLFGGIIQYNLLSRIPLQAGLAMVLEAVQDYPPEVSMYKF
GLQALLNFSNRLHEWPSFCDRLLRVPGLQGTEVWNKAEEIVRRQRSGETNGETNGDTQNG
ISLTNGNVEDFPHEPSVRQFSCLHIDPPLRPEVYEDPDEEVQDKVLFVLNNVSERNIVEK
LNDLKDALEEKHHQWFAGYLVEERAKMQPNFQQLYLDMLDGFNDRMLWAEVLRETYVSVI
RMLNAESTMNSSTERTHLKNLGGWLGSLTIARNKPIKFKNISFKDLLVEGHDTQRLLIVI
PFTCKVLIQASKSTVFRPPNPWLMEIIRLLIELYHFAELKLNLKFEIEVLCKGLDLDYKT
IEPSDCIRSRPLHEEEILAQAMPDGLEGFNDLSLVGLNRARAVNDRFSPAAIQASLPDLG
SALVYPPASGNMAATSRLRQIFHTAAQSAIAEIIAPVVERSVTIAAISTSQLVAKDFATE
ADENKMRDAAHTMVKSLSGSLALVTCKEPLRMSIMNNIRILARDLPEQALPEGLILMFVN
DNLDTVCGMVEQAAEQQSIAEIDVQIEGGIRSRRYHRNTNPREPFNDPPVKHWATFIPEP
YRQSPGGLNTEQLAIYEDFGRQARGMSQVNNASQDSGRQMSEVLQEQYPQVPNLPTPAEP
PAIPRPGSQAPSRLQTAPPMSATLPQAQLNGYVDAQTASERALALLLDLQRTSKEAQEEH
IEELGPSAPTRDAFEQLIHLVENSGTTRDQLCLGIAGRVITYLFAEAERRLEIEVMVQLV
IQLCQISVNTSRQIMMWLANLENERLLNAPVVICTVTAGLLDLQRIDLAASKAIQGRNLH
ALDFLSQFMDEILLGLTPAAFRTDFSKSLEALTQWLAEDSDLEVGKLIMSKLQVPEERVP
TPPNGASKYQVEYVFEEWVHLLRFGQRQAPSERMVAAFISQLHARGFMKTQDDSAHFLRV
CVEATVDAYEREELVPFPSLDNAYIFVDALAKLIVSLVVYQSDDDGLTTSNKATYLEGIL
SLVILVLSHHHRTRQERFNQKVFFRLFAAIICELHDARDLLPGLEPDFMLVMGKAFLVLQ
PRYFAGFTFAWLTLVSHRMFMPVMLKLADDTRWDLYAKLTEELLSHAGNLMKPAEPSAEA
KNFYRGVLRTLLVIHHDFPEFLAENHFRLCNAIPMHCTQLRNLVVSAYPSSYPELPDPFT
AGFKVDRLEDVRKAPVVRGDIEEPLRQHGIKDVVDGLLRASDQSPEEIQKICDAIYRPER
EETGLALAPVLVDTALLHSVALYVGSNAVSTAGKGPVFNAASPHAKLLESLAKELRPEGR
YHFLSAMTNQLRWPNSHTHWFSYAILHLFGSSSDQISLDVKQQITRVLLERLLVHRPHPW
GLIITLLEILKNRDYQFWELPFVKAAPEVERLFGALFQHINQSPRAIS
NT seq
6267 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcttctcaaagtactttcgccgcctgcttcaaagcaatgcgccgcagatcttc
ccgggctccgccaagggcggtgacaactctggcagctacggtctgcttgtagaggagatg
cacaagatcacgcgcgacccccagcaagcctacaagattgcagagtcaattgacacaacg
gaaggcgatctcttcagagacttcgacctgtccacattcatggagcatttcaagctggat
ccggtcgccaagaccaccttagctttggcgtgcaagaccacgtcaaagtcggatttgaga
accaaggccgatgccattctttccaacaactaccagaacttcctcatgacccttgtcaat
tccgttcccgactcgcaagacgacatctcaccagccatcctcgcgaccgtcatcgatcgt
cttgcgcaagaccctccacgcacctggaacgacgacagcaagaacaacctgcttttcgcc
atccgcgccaagtacgacaagtcgacgggaatactgcccccggacgtcaccgcagcgctc
cacatgttcgagctgctcgagaatcagaatccgctgatcaagcatgtacaacgtgccggg
ccgcgctcgacgtcgagtctggactcgtgcaaggagatgttggcctcggtcgagacacga
gacattagctaccagcaagtcgcgaatgcgctcctcttcatggccatcacccagaacggc
caggcatacaatgcgagcaacttcgtagcggcattacgggagcatcgtgcgggacagcgg
ctcgactggcaggatgtggtccactcgtttgaccgcgagggcctcaaggtcacctcacag
cactttttggcgctgtacaacgcgtttctgccgttagcccaggagtatgagaactttgac
atccagctactatggggaggatcatggagcaaccaggacacacaactgtcattcgtcgtg
gcattcttggcctgtagccctgaggatttggacgtcacgcaggttcctcgccttcgtaag
gcattcacgctcgagcaattcgaagatgcctccgaagtggtcaaggaacgtgcaaaggaa
gtcgtgaaacatccgcttgtttcgctagatgctaccgcagccctcttcaacatcatcttc
cgctcacaagagacatacaacattgctcaacgttcgcagatcccgcagaccgttatcaac
cagaataccgacatcttcgtcgtcgccgcatcggctgtgcccaagccatgggtcggcctc
caggagatggccatgcgccaactgttcggtcctttcgtcgaaaagcgcgtgcccaacgtc
tacagctttgccctccacggcctctggaagcaggacagcatttgggttgctgctagattc
cttgacttctacaacgccaatcctctttccttgacaaccataatggagcatgcggcagag
catgtttggactcaagacctcgttgcattgaactctgacatgagtctggatcttgcagca
ctcgcacacagggaaggtttgtttgacctggaaccttgggcgcaggacactttgaggcag
atcccggttttccctagggttcttgcttcattcctcaacaacaaggccgagacggatctg
caagcccagcgcgagggtgtcccgcctgcgaatattcccctcgcagtgaagactgtccac
cctctcctaggattcctccagggccacttgccggatgaggagttggtttctctacagcgg
atttgcattggagcatacccaaggttgatcaactacggcgagggcttcgatgaacttatc
gacgccaatggaaaggacgggaatgctatttcaccagaggccgacaggaagatgcaggaa
cattacaagaacatgtacagcggtgagagcgatgtgcgtcatatcatcgaggaactgcag
aagtacaagacttccgaggaccctgcggaccaagacctgttcgcctgtatgatccacggc
ctcttcgacgagtacaactgcttcggagaatatcctctggaagcacttgcaactactgcg
gttcttttcggcggcatcatccagtacaatctgctatcccgcattcctcttcaggctggc
ctggctatggttttggaggcggttcaggactatccaccagaggtctccatgtacaagttt
ggattgcaggcacttctgaacttctctaacaggctccacgaatggcccagcttctgtgac
cgcctcctccgtgtgcccggactgcaaggtactgaggtatggaacaaggcggaagagatc
gttagacggcagcgttctggtgaaaccaacggcgaaaccaacggcgacacgcagaacggt
atttccttgaccaatggaaacgtggaagactttccacacgaaccaagcgtgcgccagttc
agctgcctgcacatagatcccccgcttcgtccagaggtttacgaggatccggatgaggag
gtgcaggataaggttctcttcgtcctcaacaacgtctcggagcgcaacattgtggaaaag
cttaacgatctcaaggacgccttggaggaaaagcatcatcaatggttcgccggctatctc
gttgaggaacgtgcgaagatgcaacccaacttccagcagttgtacctcgacatgttggat
ggattcaacgataggatgctctgggctgaggttctccgcgagacttacgtttcggtcatt
cgcatgcttaacgcggaatccaccatgaactcgtctactgagcgtactcatctgaagaac
cttggtggttggcttggctctctgactattgccaggaacaagcccatcaagttcaagaac
atttcctttaaggatttgctggtcgaaggccatgatactcaacgcctcctcatcgtaatc
cctttcacctgcaaggtcctcatccaagccagcaagtcaaccgtttttaggcccccgaat
ccctggcttatggagatcatccgcctgctcatcgaactgtaccactttgccgaactcaaa
ctcaacctgaagtttgagattgaggttctgtgtaagggcttggacctcgactataagacc
atcgaaccatccgattgcatcaggtctaggcctcttcacgaggaagagattctagcacaa
gcgatgccggatggcctggaaggcttcaatgatttgtccttggtcggcctcaaccgggct
agggctgtcaacgaccggttctcacccgctgccattcaagcctctttgccggatcttggc
tcggcgctcgtatacccacctgcgtccggcaacatggcagccacgagccgcttgcgacag
atcttccacacagctgcgcaatcagccattgcggagattatcgcgcccgttgtcgaacgc
tctgtcacgattgcggctatttctacgtcgcagctggtcgccaaggactttgctactgag
gccgatgagaataagatgcgcgacgctgcgcacacaatggtcaagtctttgtctggcagc
cttgcgcttgttacttgcaaggagccgttgcgcatgagcatcatgaacaacattcgcatt
ctagctcgggatctcccagagcaagccttgcccgaaggccttatcctcatgtttgtcaat
gacaatctggacacggtctgcggcatggttgagcaagccgcagaacagcaatccattgca
gagatcgacgtacagattgaaggagggattcgctctcgacgttaccatcgcaacacgaac
cctcgcgagccgttcaacgatcctccggtcaagcactgggccaccttcattcccgagcct
tacaggcagagccccggtggactcaacacggaacagttggccatctacgaggattttggt
cgccaagcccgaggaatgtcgcaagtcaacaacgcctcccaggacagtggtcgccaaatg
tccgaggtcctgcaagagcagtatcctcaggttccgaatctcccaacgcctgcagagccg
cctgcgatcccgcgtcccggctctcaggccccttcgcgccttcagaccgctccgcctatg
tcagcgacgctgccacaggctcagttgaatggttatgttgatgctcagaccgcaagcgaa
cgcgcgttagctcttcttctggatctacagcgcacctcaaaggaagctcaagaagagcat
attgaagagttgggcccttctgctcctactcgtgatgccttcgagcaactcattcacctc
gtggagaactcgggtactacgagggaccaactttgcctgggcatcgctggacgtgtgatt
acatacttgtttgcggaggctgagcggcgtctggagatcgaggtgatggtgcagctggtc
atccaattgtgccagatatccgtcaatacctcgcggcagatcatgatgtggcttgcaaac
cttgagaacgagcgtctgcttaatgccccggtcgttatctgcaccgttactgccggcctt
cttgatcttcagcgcatcgatttggctgcatcgaaggccatccaaggtcgcaacctgcac
gccttggacttcctttcccagtttatggacgagattctcctgggccttaccccggctgct
ttccgcacagacttctccaagtcgctcgaggccttgacgcaatggctcgcggaagattca
gatcttgaggttggaaagctgatcatgtccaagctccaagttccggaggagcgtgtaccg
actcctcccaatggtgccagcaagtaccaggtggagtatgtattcgaggagtgggtccat
ctcctccgatttggtcaacgtcaggctccttctgagaggatggtcgctgctttcattagc
caactgcacgcccgtgggttcatgaagacgcaggatgattccgcccacttccttcgtgtc
tgcgtcgaggcaactgtggatgcgtacgagcgggaggaacttgttcccttcccaagcctg
gacaacgcctacattttcgtggatgcgttggcaaagctcatcgtctccttggtcgtctac
cagagcgatgacgatggtctgacaacatccaacaaggcgacgtacctcgagggcattctc
agcctggtcatcctggtgctctcacaccaccatcgcacccgacaggagcgcttcaaccag
aaggttttcttccgcctcttcgctgccatcatctgcgaacttcatgacgctagggatctt
ctccccggcctcgagccagactttatgttggtcatgggtaaagctttcttggtcctccag
ccgaggtacttcgccggcttcacatttgcttggctcaccttggtctcgcaccgcatgttc
atgcctgtcatgctcaagttggccgatgacactaggtgggatctctacgctaagctcacc
gaggagcttctctcgcacgccggtaacctcatgaagccggcggagcccagtgccgaagct
aagaacttctaccgcggcgttctgaggacgcttctggtcattcatcacgacttccccgag
tttctggctgagaaccacttccgcttgtgcaacgcgatcccgatgcactgcactcagctt
cgcaacttggtcgtcagtgcctacccgtcttcctaccctgagctcccggatccgtttacc
gcgggcttcaaggtcgatcgtctcgaagatgtgaggaaggcgccggttgttcgtggcgac
atcgaagagcctctgcgtcagcacggcatcaaggatgtggttgatggcctgcttcgcgcg
tcggaccagagccctgaggagatccagaagatctgcgatgccatctaccgccctgagcgt
gaggaaactggattggccttggcacctgtcctcgttgacactgccctcttgcactctgtt
gccctgtacgttggcagcaatgcagtctccaccgctggcaaaggcccggtcttcaatgcc
gcttctcctcatgccaagctcttggagagtctcgctaaggagcttcgcccggaaggccgt
taccacttcctcagcgccatgacgaaccagctgcgctggcccaacagccacactcactgg
tttagttatgccatcctgcaccttttcggatcgagcagcgaccagattagcttggacgtc
aagcagcagatcacgcgcgttctcctggagcgccttctcgtgcaccgcccgcacccgtgg
ggactcatcatcacgttgttggagattctcaagaaccgcgactaccagttctgggagctg
cccttcgtcaaggctgcgcccgaggtcgaacgcctcttcggggcgctgttccagcacatc
aaccaaagcccacgcgcgatctcgtaa
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