Nocardioides panacisoli: KUV85_16260
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Entry
KUV85_16260 CDS
T08184
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
npc
Nocardioides panacisoli
Pathway
npc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
npc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KUV85_16260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npc03021
]
KUV85_16260
03400 DNA repair and recombination proteins [BR:
npc03400
]
KUV85_16260
Enzymes [BR:
npc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KUV85_16260
Transcription machinery [BR:
npc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KUV85_16260
DNA repair and recombination proteins [BR:
npc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KUV85_16260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QYJ03854
LinkDB
All DBs
Position
3324505..3328047
Genome browser
AA seq
1180 aa
AA seq
DB search
MWLAGASVQRFARRTTLLAARTTPGKTRISFAKINEPLELPQLLSLQTDSFDWLIGNEDH
LGRVEERRSRGEDVSDKSGLAEIFEEISPIEDFNETMSLSFDSPVFYDPNYSVEECKEKD
LTYSAPLYVSAEFMNNETGEIKGQTVFMGEFPLMTPKGTFVINGTERVVVSQLVRSPGVY
FERTPDKTSDKDIYTSKLIPSRGAWLEFEIDKRDLVGVRLDRKRKQNVIVLLKALQAVAE
DIGEEYDFDAVMAEMRQYESIQYTEEKDATTSADEALLDIYRKLRPGEPPTREAALTLLK
NYYFNPKRYDLAKVGRYKVNKKIGAGQAYDQQTLTIADVVATIRYLVALHDGREDLTDAE
GEEIYLDLDDIDHFGNRRMRTVGELIQNQLRTGLARMERVVRERMTTQDVEAITPQSLIN
IRPVVAALKEFFGTSQLSQFMDQTNPIAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSH
YGRMCPIETPEGPNIGLIGSLASYGRINPFGFVETPYRVVEKGRVTDEIHYLTADDEDRY
VIAQANAQIDEQGNFVNERVLVRQRDQEVSEILREEIDYMDVSPRQMVSVATALIPFLEH
DDANRALMGANMQRQAVPLIKADSPFVGTGVERRAAIDAGDVMVAESAGVVKSVTADLIE
VMNDDGTHVSYKMAKFRRSNQGTCINQSPLVDAGDRVEVGSPIADGPSTDNAEMALGQNL
LVAFMSWQGHNYEDAIILSQRLVQEDVLTSIHIEEHEVDARDTKLGPEEITRDIPNVSEE
TLADLDERGIIRIGAEVSPGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKV
PHGESGTVIGVRVFDREDGDELPPGVNQLVRVYVAQKRKISVGDKLAGRHGNKGVIAKIL
PTEDMPFMEDGTPVDVVLNPLGVPRRMNIGQVLELHLGWLAKQGWDLNLSDDPDNADWKQ
RLIDIHADKVEGDSKVATPVFDGAREDEITGLLGSALPNRDGVRLMGGDGKANLFDGRSG
EPYPDPVSVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAM
EAYGAAYALQELLTIKSDDVAGRVKVYEAIVKGENIPDSGIPESFKVLVKEMQSLSLNVE
VLSEDGTAIEMRDSEDDVFRAAEELGIDLSRREPNTVEEV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgtggttggccggcgcctccgtacagcgattcgctcgaaggacaacactcttggccgcg
cgtaccactcccggtaagacccgcatttctttcgcgaagatcaacgaaccgctcgagctc
ccgcagctcctctccctccagaccgacagtttcgactggctgatcggcaacgaggaccac
ctgggtcgcgtcgaggagcgacgctcccgtggtgaggacgtctcggacaagtccggcctc
gccgagatcttcgaggagatctcgccgatcgaggacttcaacgagaccatgtcgctctcg
ttcgacagcccggtcttctacgacccgaactactcggtcgaggagtgcaaggagaaggac
ctcacctactccgcgccgctctacgtctccgccgagttcatgaacaacgagaccggcgag
atcaagggccagacggtcttcatgggcgagttcccgctcatgacccccaagggcaccttc
gtcatcaacggcaccgagcgtgtcgtcgtctcccagctggtccggtccccgggcgtgtac
ttcgagcgcaccccggacaagacctccgacaaggacatctacacctccaagctcatcccg
agccgcggcgcctggctcgagttcgagatcgacaagcgcgacctggtcggcgtccgcctc
gaccgcaagcgcaagcagaacgtcatcgtgctgctcaaggccctgcaggccgtcgccgag
gacatcggcgaggagtacgacttcgacgcggtcatggccgagatgcgccagtacgagtcg
atccagtacaccgaggagaaggacgccaccaccagcgccgacgaggcgctgctggacatc
taccgcaagctgcgtcccggtgagccgccgacgcgcgaggccgcgctgacgctgttgaag
aactactacttcaacccgaagcgctacgacctggccaaggtcggtcgctacaaggtcaac
aagaagatcggcgccggccaggcctacgaccagcagacgctgaccatcgccgacgtggtc
gccacgatccgctacctcgtcgcgctgcacgacggccgcgaggacctcaccgacgccgag
ggcgaggagatctacctcgacctcgacgacatcgaccacttcggcaaccgccgcatgcgg
accgtcggcgagctcatccagaaccagctgcgcaccggactcgcgcggatggagcgcgtg
gtgcgcgagcggatgaccacccaggacgtcgaggccatcacgccgcagtcgctgatcaac
atccgtccggtcgtcgcggcgctgaaggagttcttcggcacctcgcagctctcgcagttc
atggaccagacgaacccgatcgcgggcctgacgcacaagcgccggctctccgcgctcggc
cccggcggtctgtcccgtgaccgcgcgggcatggaggtccgtgacgtccacccgtcgcac
tacggccggatgtgcccgatcgagaccccggagggcccgaacatcggtctgatcgggtcg
ctggcctcctacggccggatcaacccgttcgggttcgtcgagacgccgtaccgcgtggtg
gagaagggtcgcgtcaccgacgagatccactacctgaccgccgacgacgaggaccgctac
gtcatcgcgcaggccaacgcgcagatcgacgagcagggcaacttcgtcaacgagcgggtc
ctggtgcgccagcgcgaccaggaggtctccgagatcctgcgcgaggaaatcgactacatg
gacgtctcgccgcgccagatggtgtcggtggcgaccgcgttgatccccttcctcgagcac
gacgacgccaaccgtgcgctcatgggcgccaacatgcagcgccaggccgtcccgctgatc
aaggccgacagcccgttcgtcggcaccggtgtggagcgccgcgccgccatcgacgccggt
gacgtgatggtcgccgagtccgccggtgtggtgaagagcgtgaccgccgacctcatcgag
gtcatgaacgacgacggcacccacgtcagctacaagatggcgaagttccgtcggtccaac
cagggcacctgcatcaaccagtccccgctggtcgacgccggcgaccgcgtcgaggtcggt
tcgccgatcgccgacggtcccagcaccgacaacgcggagatggcgctcggccagaacctg
ctggtggcgttcatgtcctggcagggccacaactacgaggacgcgatcatcctcagccag
cgcctggtgcaggaggacgtcctcacctcgatccacatcgaggagcacgaggtcgacgcc
cgcgacaccaagctggggccggaggagatcacccgcgacatccccaacgtcagcgaggag
accctcgccgacctggacgagcgcggcatcatccgcatcggtgcggaggtctcgccgggc
gacatcctcgtcggcaaggtcacccccaagggtgagaccgagctgacgccggaggagcgg
ctgctgcgcgcgatcttcggtgagaaggcccgcgaggtccgcgacacctcgatgaaggtg
ccgcacggcgagtccggcaccgtcatcggcgtgcgggtcttcgaccgcgaggacggcgac
gagctgcccccgggcgtcaaccagctggtgcgggtctacgtcgcgcagaagcgcaagatc
tccgtcggtgacaagctcgccggccggcacggcaacaagggcgtgatcgccaagatcctg
cccaccgaggacatgccgttcatggaggacggcaccccggtcgacgtcgtgctgaacccg
ctgggcgtgccgcgccggatgaacatcggccaggtgctcgagctgcacctgggctggctg
gccaagcaggggtgggacctcaacctgtccgacgaccccgacaacgccgactggaagcag
cggctgatcgacatccacgccgacaaggtggagggcgacagcaaggtcgccacccccgtc
ttcgacggtgcgcgtgaggacgagatcaccggcctgctcggcagcgcgctgcccaaccgt
gacggcgtacgcctcatgggtggcgacggcaaggccaacctgttcgacggtcgctccggc
gagccgtacccggacccggtgtcggtgggctacatgtacatcctcaagctccaccacctc
gtggacgacaagatccacgcgcggtcgacgggtccgtactccatgatcacccagcagccg
ctcggcggtaaggcccagttcggtggccagcgcttcggtgagatggaggtctgggcgatg
gaggcgtacggcgccgcctacgccctgcaggagctgctgacgatcaagtccgacgacgtc
gcgggccgcgtgaaggtctacgaggccatcgtgaagggcgagaacatccccgactcgggc
atcccggagtccttcaaggtgctcgtcaaggagatgcagtcgctgtcgctgaacgtggag
gtcctcagcgaggacggcaccgcgatcgagatgcgtgactccgaggacgacgtgttccgc
gccgcggaggagctcggcatcgacctctcccgccgtgagcccaacacggtcgaagaagtg
tga
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