Novosphingobium pentaromativorans: JI59_01885
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Entry
JI59_01885 CDS
T03399
Name
(GenBank) ATP-dependent exonuclease
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
npn
Novosphingobium pentaromativorans
Brite
KEGG Orthology (KO) [BR:
npn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npn03400
]
JI59_01885
Enzymes [BR:
npn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JI59_01885
DNA repair and recombination proteins [BR:
npn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
JI59_01885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
UvrD_C
AAA_19
UvrD_C_2
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AIT78650
UniProt:
G6EI15
LinkDB
All DBs
Position
417784..421284
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AA seq
1166 aa
AA seq
DB search
MSGPATVHPLHGKQMRAVDPEETVWLSASAGTGKTQVLSSRVLRLLLQPGVDPSQILCLT
FTKAGATEMAARINGTLAEWVRLEDTQLFARLDAIGAKADGETMARARTLFAAVLDCPGG
GLRIDTIHAFSQWLLATFPLEAQLIPGSRPMEDRERVLLARQVLADLLVSAQSEPRGDPQ
LLRAISDLSLRHGPDAVEAFLLRCASAREAWFGPGGWQEPMRENVLRLLGLPSEADEVYL
ADLCSDERFDVRSLRRCCETLADWDTKAGREGAEASVVWLSASPEKRAATIDDLYFGLFT
KTTDAPKQLTNILKRDPDYEGYVLRVQESIARVREAKALLELTERLVPALRLGRTFALAW
DEAKQREGLIDFDDQIRRAADLLRNQSQADWIRYKLDRRFDHILVDEAQDTNAAQWDIIL
AMAEEFWAGLGQHGDLMRTLFVVGDYKQAIFRFQGTSPENFRRAAEKVRAKMNEAAQNAE
MLRSNFRPRSLLELGLDRSFRTAQKVLDFVDDAIGGIGHANFGLADAPERHDGQDRPGYV
ALWKPVGAAIGDDDDDPRDEGEDEGQEGWLSKPDRQMAEGIARQVRAWLDPMAPGFTLQK
GKPRRAHAGDIMVLVRQRKELAGLIVGRLHAAGVPVAGVDRLRLGAPLAVKDLVAALRFA
VQPFDDLNLASLLVSPLVGWSQEQLLRHGYRDKHTRLWSHLRASSDPQVAAVLQQLGALL
ALADFEPPQQLLHWLLVGPWQARRKLVARLGSEANDPIDELLNAAQAYVATDTPSLAGFL
AWFDAGDGELKREADSAAGLVRVMTVHGSKGLQAPIVILADATGNPERSRDRGLDLPDPR
DEHRKIPLPPIPSAAKKIGRIRDEIETNRAADEQEHWRLLYVAMTRAEEALFVGGALGKS
DKGVPAPKSWYARLRDLFPPEAEVADPVWGARCEWGELPEPVAPETGPVELPLPEPLPVW
LDRAPPAEPRPPRPLAPSALGEEEAPDPPFPPGAGRDAARRGTLVHKLLERLPEVALAER
EAAGRAWLARNAADLEETQREAMLGDALGVLANPDWAPLFAEGSLAEVPVAAIVGGQVVA
GTIDRLVVEPERVRLVDYKTSRRPPESLEAVPKGNLRQMAAYAAALEVAFPGRAVEVALL
YTTAPRLITVPAEVLAAHKPDFLPPE
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtccggccaccgtccatccccttcacggcaagcagatgcgcgcggtcgatccc
gaagagaccgtgtggctctccgcttcggccggaaccggcaagacgcaggttctgtcttcg
cgcgtgcttcgcctgctgctgcagccgggcgtggatccttcgcagatcctgtgcctgact
ttcaccaaggctggcgctaccgagatggcggcgcgcatcaacggcactctcgccgaatgg
gtgcggcttgaggatacgcagcttttcgccaggctcgatgccatcggcgccaaggccgat
ggcgagaccatggcacgcgcacgcacactgtttgccgccgtgctcgactgtcccggcggc
ggcctgcgcatcgatacgatccacgccttctcgcagtggctgctggcgacgttcccgctc
gaagcgcagctgatcccgggatcgcggccgatggaagaccgcgagcgcgtgctgcttgcg
cggcaggttctggccgacctgctggtctcggcccagagcgagccccggggcgatccgcaa
ttgctgcgcgccatcagcgacctctcgctgaggcacggacccgatgcggtcgaggctttc
ctgctgcgctgcgcctcggcgcgtgaggcgtggttcggtcccggcggctggcaggaaccg
atgcgcgagaacgtgctgcgattgctgggcctgccgagcgaagccgacgaggtctatctg
gcagatctgtgcagcgacgagcgcttcgacgtgcgctctctgcgccgatgctgcgagacg
ttggcagactgggacaccaaggccgggcgagaaggcgccgaagcctcggtcgtgtggctc
tccgcttcgccggagaagcgcgccgcgaccatcgacgatctctatttcgggctgttcacc
aagacgaccgatgcgcccaagcaactgacgaatattctcaaacgcgatcccgactacgag
ggttacgtactgcgcgtgcaggagagcatcgcccgggtgcgcgaggccaaggcattgctg
gaactgaccgagcgactggtccccgcgctgcggctaggccggacctttgctctcgcatgg
gacgaagccaagcagcgcgagggcctgatcgacttcgacgaccagatccgccgcgcggcc
gatctgctgcgcaaccagtcgcaggcggactggatccgctacaagctcgaccgccgcttc
gaccacattctcgtcgacgaggcgcaggacaccaatgccgcgcaatgggacatcatcctt
gccatggccgaggagttctgggccggccttggccagcatggcgacctgatgcgtacgctc
ttcgttgtgggcgattacaagcaggcgatctttcgcttccagggcacgagccccgagaac
ttccgccgcgccgccgagaaagtgcgcgcaaagatgaacgaggcggcgcagaatgcagaa
atgctgcgcagcaatttccgtccgcgcagcctgctcgaacttggcctcgaccgcagtttt
cgcactgcgcagaaagtcctcgatttcgtcgacgatgcgatcggcgggatcggccatgcc
aatttcggtctcgccgatgcgcccgagcgccatgacgggcaggaccggcccggatacgtc
gccttgtggaagccggttggcgcggcgatcggcgacgatgacgatgacccgcgcgacgag
ggtgaggatgaagggcaggagggctggctttccaagcccgaccgccagatggccgaaggc
atcgcccggcaggtgagggcatggctcgatccgatggctccgggcttcaccttgcagaaa
ggcaagccgcgccgcgcccatgccggggacatcatggtgctggtgcgccagcgcaaggaa
cttgccgggctgatcgtcgggcggcttcatgctgcaggcgtgcctgttgccggtgtcgac
cgcctccggctcggcgcgccgctggcggtaaaggatctcgtcgccgcgctgcgcttcgcg
gtccagccgttcgacgatctcaacctcgccagcctgctcgtctcgccgctggtgggttgg
agccaggagcaattgctgcgccacggctaccgggacaagcacacgcgtctctggtcgcat
ctacgcgccagctcggatccgcaagtcgctgccgtgctgcagcaattgggcgcgctgctg
gcactggccgacttcgaaccaccgcagcaattgctgcactggctgctggtggggccgtgg
caggcccggcgcaagctggtcgcccggctcggcagcgaggccaacgatcccatcgacgaa
ctgctcaacgccgcgcaggcctatgttgccaccgacacgccaagccttgcaggtttcctt
gcctggttcgatgccggtgacggcgaactgaagcgcgaggcggacagcgccgccgggctt
gtccgggtgatgacggtccacggctcgaaaggcctgcaggcgcctattgtcattctcgcc
gatgcgaccggcaatcccgagcgcagccgcgaccgcggcctcgatctgcccgacccgcgc
gatgagcatcgcaagatcccgcttccccctatcccctcggcggcaaagaagatcgggcgg
atcagggacgagatcgagaccaaccgtgcggcggacgagcaggagcactggcgcctgctc
tacgtcgcgatgacccgcgcggaagaagcgctgttcgtcggcggcgcgctgggcaagagc
gacaagggcgtgcctgcgcccaagagctggtacgcgcgcctgcgcgatctttttccgccc
gaagccgaggtcgccgatccggtctggggtgcgcgctgcgaatggggcgaactgccggag
cccgtcgcgcctgaaaccggcccggtcgagttgcccttgcccgaaccgctgccggtctgg
ctggaccgcgcgccgcctgccgaaccgcgtccgccaaggccgctcgcgccttcggccctg
ggcgaggaggaagcgcccgatccgccgttcccgcccggtgcgggccgcgatgccgcgcgg
cgcggtacgctggtccacaagctgctcgagcgtctgcccgaagtggcgctggccgagcgc
gaagcggcagggcgcgcctggcttgcgcgcaatgctgccgatctggaagagacgcagcgc
gaggcgatgctgggcgatgccctgggggttcttgccaatccggactgggcaccgctgttc
gccgagggcagccttgccgaagtgccggtggccgccatcgtcggtgggcaggtcgtggcg
ggcactatcgaccggctggtcgtcgagcccgagcgcgtgcgcctcgtcgactacaagacg
tcgcgccggccgcccgaatcgctggaggccgtgcccaagggcaacctgcgtcagatggct
gcctacgcagccgcgctcgaagtggcctttccgggccgcgctgtggaagtggcgttgctc
tacaccacggccccgcggctcatcaccgtgcctgccgaggtccttgcagcgcacaagccg
gacttcttgccacccgagtaa
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