Novosphingobium sp. PP1Y: PP1Y_AT24861
Help
Entry
PP1Y_AT24861 CDS
T01515
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PP1Y_AT24861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npp03021
]
PP1Y_AT24861
Transcription machinery [BR:
npp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PP1Y_AT24861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Asp_Glu_race
Motif
Other DBs
NCBI-ProteinID:
CCA93281
UniProt:
F6IPC9
LinkDB
All DBs
Position
complement(2606150..2608183)
Genome browser
AA seq
677 aa
AA seq
DB search
MSRNDDSSGDKNDGTDAPLIDLNEASIKKLIARAKRRGVITYDELNEALPQDQMSSEQIE
DIMAAISEMGVNIVESDEDGQSDDDNDNDNDVEEVDSDESAPKMVAETKKKETVERTDDP
VRMYLREMGAVELLSREGEIAIAKRIEAGRDMMILGLCESPITFHAIIQWSEALNNGEMQ
LREILDLDAMLSKEPAPESLNEDGESDDDGEISEATAGPSYKEDDDEEEEESADGEEGED
GEGRSERQRDEDEEDNTLSLAQMEAALKPEALEKFARITELFQAFEKLQSERLDALALGI
DFPTAKEDHYQQLREELTAQVESVQFHATKIEYLVDNLYAFNRRLTTLGGQMLRLAERHK
VKRADFLNTYVGRELDDSWLPEMSRKDKKWAAFAENEADSVERIRSEISDIAAATGMALP
EFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGR
EPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAI
QANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALR
KLKHPSRSRKMRSFLDQ
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaaacgacgacagcagcggcgacaagaacgacggcaccgacgcgccgctgatc
gatctcaacgaagcttcgatcaagaagctgatcgcgcgtgcgaagcgccgcggtgtgatc
acctacgacgaattgaacgaggccctgccgcaggaccagatgtcgtccgagcagatcgag
gacatcatggcggccatctccgagatgggcgtcaacatcgtcgagagcgacgaggacggc
cagagcgacgacgataacgataacgataacgacgtcgaagaagtcgattcggacgaatcg
gcgcccaagatggtcgccgagacgaagaaaaaggaaacggtcgagcgtaccgacgatccg
gtgcgcatgtacctgcgcgagatgggcgcggtcgaactgctcagccgtgagggcgaaatc
gccatcgccaagcgcatcgaagccggccgcgacatgatgatcctgggcctgtgcgaaagc
ccgatcaccttccacgccatcatccagtggtccgaagcgctcaacaacggtgaaatgcaa
ctgcgcgagatcctcgatctcgacgccatgctctcgaaggagcctgcgcccgaaagcctc
aacgaggacggcgagagcgacgacgacggcgagatcagcgaagccaccgcgggcccctcg
tacaaggaagacgacgacgaggaagaagaagagtcggctgacggtgaggaaggcgaggac
ggcgaaggccgcagcgaacgccagcgcgacgaggacgaggaagacaacaccctcagcctc
gcgcagatggaagctgccctcaagcccgaagcgctcgagaagttcgcgcgaatcaccgag
ctgttccaggctttcgaaaagctgcagtcggagcgtctggacgctctcgcgctcggaatc
gacttcccgaccgccaaggaagatcactaccagcagctgcgcgaggaactgaccgcgcag
gtggaatcggtgcagtttcacgcgaccaagatcgagtatctggtcgacaacctttacgcc
ttcaaccgccgcctgacgacgctgggcgggcagatgctgcgccttgcagagcggcacaag
gtcaagcgtgcagacttcctgaacacttacgtcggccgtgaactcgacgacagctggctc
ccggaaatgtccaggaaggacaagaagtgggccgctttcgctgaaaacgaggccgattcg
gtcgagcgcatccgttcggaaatctcggacatcgccgctgccaccggcatggcgctcccc
gagtttcgccgcatcgtcaacatggtccagaagggtgagcgcgaggcgcgcatcgccaag
aaggaaatggtcgaagcgaacctgcgcctggtgatctcgatcgccaagaagtacaccaac
cgcggcctgcagttcctggacctgattcaagaaggcaacatcggcctgatgaaggcggtc
gacaagttcgagtaccgccgcggctacaagttttcgacttacgcgacctggtggatcaga
caggccatcacccgctcgatcgcggaccaggcccgcaccatccgtatcccggtccacatg
atcgagacgatcaacaagctggtgcgcacaagccgccagttcctgcacgagcagggccgc
gagccgacgccggaagaaatggccgagcgtctctcgatgccgctcgagaaggtccgcaag
gtgatgaagatcgccaaggaaccgatcagcctcgaaacgccgatcggcgatgaggaagat
tcgcacctgggcgatttcatcgaggacaagaacgcgatcatcccggtggacgcggcgatc
caggcgaacctcaaggaaacggtcacccgcgtccttgccagcctcaccccgcgtgaggaa
cgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgatcacacgctggaagaagtc
ggccagcaattctcggtgacccgcgaacgtatccgtcagatcgaggccaaggcgctgagg
aagctcaagcacccgagtcgcagtcgcaagatgcgctcgttcctggaccagtaa
DBGET
integrated database retrieval system