KEGG   Novosphingobium sp. PP1Y: PP1Y_AT24861
Entry
PP1Y_AT24861      CDS       T01515                                 
Name
(GenBank) RNA polymerase primary sigma factor
  KO
K03086  RNA polymerase primary sigma factor
Organism
npp  Novosphingobium sp. PP1Y
Pathway
npp02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:npp00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    PP1Y_AT24861
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:npp03021]
    PP1Y_AT24861
Transcription machinery [BR:npp03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PP1Y_AT24861
SSDB
Motif
Pfam: Sigma70_ner Sigma70_r3 Sigma70_r2 Sigma70_r1_1 Sigma70_r4 Sigma70_r1_2 Asp_Glu_race
Other DBs
NCBI-ProteinID: CCA93281
UniProt: F6IPC9
LinkDB
Position
complement(2606150..2608183)
AA seq 677 aa
MSRNDDSSGDKNDGTDAPLIDLNEASIKKLIARAKRRGVITYDELNEALPQDQMSSEQIE
DIMAAISEMGVNIVESDEDGQSDDDNDNDNDVEEVDSDESAPKMVAETKKKETVERTDDP
VRMYLREMGAVELLSREGEIAIAKRIEAGRDMMILGLCESPITFHAIIQWSEALNNGEMQ
LREILDLDAMLSKEPAPESLNEDGESDDDGEISEATAGPSYKEDDDEEEEESADGEEGED
GEGRSERQRDEDEEDNTLSLAQMEAALKPEALEKFARITELFQAFEKLQSERLDALALGI
DFPTAKEDHYQQLREELTAQVESVQFHATKIEYLVDNLYAFNRRLTTLGGQMLRLAERHK
VKRADFLNTYVGRELDDSWLPEMSRKDKKWAAFAENEADSVERIRSEISDIAAATGMALP
EFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGR
EPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAI
QANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALR
KLKHPSRSRKMRSFLDQ
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgagcagaaacgacgacagcagcggcgacaagaacgacggcaccgacgcgccgctgatc
gatctcaacgaagcttcgatcaagaagctgatcgcgcgtgcgaagcgccgcggtgtgatc
acctacgacgaattgaacgaggccctgccgcaggaccagatgtcgtccgagcagatcgag
gacatcatggcggccatctccgagatgggcgtcaacatcgtcgagagcgacgaggacggc
cagagcgacgacgataacgataacgataacgacgtcgaagaagtcgattcggacgaatcg
gcgcccaagatggtcgccgagacgaagaaaaaggaaacggtcgagcgtaccgacgatccg
gtgcgcatgtacctgcgcgagatgggcgcggtcgaactgctcagccgtgagggcgaaatc
gccatcgccaagcgcatcgaagccggccgcgacatgatgatcctgggcctgtgcgaaagc
ccgatcaccttccacgccatcatccagtggtccgaagcgctcaacaacggtgaaatgcaa
ctgcgcgagatcctcgatctcgacgccatgctctcgaaggagcctgcgcccgaaagcctc
aacgaggacggcgagagcgacgacgacggcgagatcagcgaagccaccgcgggcccctcg
tacaaggaagacgacgacgaggaagaagaagagtcggctgacggtgaggaaggcgaggac
ggcgaaggccgcagcgaacgccagcgcgacgaggacgaggaagacaacaccctcagcctc
gcgcagatggaagctgccctcaagcccgaagcgctcgagaagttcgcgcgaatcaccgag
ctgttccaggctttcgaaaagctgcagtcggagcgtctggacgctctcgcgctcggaatc
gacttcccgaccgccaaggaagatcactaccagcagctgcgcgaggaactgaccgcgcag
gtggaatcggtgcagtttcacgcgaccaagatcgagtatctggtcgacaacctttacgcc
ttcaaccgccgcctgacgacgctgggcgggcagatgctgcgccttgcagagcggcacaag
gtcaagcgtgcagacttcctgaacacttacgtcggccgtgaactcgacgacagctggctc
ccggaaatgtccaggaaggacaagaagtgggccgctttcgctgaaaacgaggccgattcg
gtcgagcgcatccgttcggaaatctcggacatcgccgctgccaccggcatggcgctcccc
gagtttcgccgcatcgtcaacatggtccagaagggtgagcgcgaggcgcgcatcgccaag
aaggaaatggtcgaagcgaacctgcgcctggtgatctcgatcgccaagaagtacaccaac
cgcggcctgcagttcctggacctgattcaagaaggcaacatcggcctgatgaaggcggtc
gacaagttcgagtaccgccgcggctacaagttttcgacttacgcgacctggtggatcaga
caggccatcacccgctcgatcgcggaccaggcccgcaccatccgtatcccggtccacatg
atcgagacgatcaacaagctggtgcgcacaagccgccagttcctgcacgagcagggccgc
gagccgacgccggaagaaatggccgagcgtctctcgatgccgctcgagaaggtccgcaag
gtgatgaagatcgccaaggaaccgatcagcctcgaaacgccgatcggcgatgaggaagat
tcgcacctgggcgatttcatcgaggacaagaacgcgatcatcccggtggacgcggcgatc
caggcgaacctcaaggaaacggtcacccgcgtccttgccagcctcaccccgcgtgaggaa
cgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgatcacacgctggaagaagtc
ggccagcaattctcggtgacccgcgaacgtatccgtcagatcgaggccaaggcgctgagg
aagctcaagcacccgagtcgcagtcgcaagatgcgctcgttcctggaccagtaa

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