Novosphingobium sp. PP1Y: PP1Y_AT29195
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Entry
PP1Y_AT29195 CDS
T01515
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PP1Y_AT29195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npp03400
]
PP1Y_AT29195
Enzymes [BR:
npp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PP1Y_AT29195
DNA repair and recombination proteins [BR:
npp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PP1Y_AT29195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
SecA_DEAD
UB2H
AAA_30
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCA93695
UniProt:
F6IG37
LinkDB
All DBs
Position
3064657..3068142
Genome browser
AA seq
1161 aa
AA seq
DB search
MPDFQRLLSATTPLTLAAVTRGAQPLVMADLARAAKGRAVFIADNEAAMSAIAEAAKFFA
PELDVLEFPAWDCLPYDRASPALSVSARRLAALYRLQAKRSGPQLLVTTANAVLQRVLTP
FRIRESVRLIKHGMEIGHESLIGLLRRQGYQRTDTAIDAGEFAVRGSIFDIVPSGLEGGL
RLDFFGDELETLRLFDTGTQRSTGTVAEHLLVPASEALLDDDTVKRFRSRYREMFGAHAT
ADPLYQAVSDGRRLAGMEHWLPLFEDRLVSLFDHLSDDDLIVADTSAVGATEERLGDIAD
YHKARLDTSGQKAGSYRPLAIDALYLGSEELEQALSGFPVHRADAFAKPEGSKIIDFGFA
NARDFTPERARGDNAYEAAAKHLHAVGKAGRKPILAAYSTGSRARLVSILGEASQTNKWG
PEPRLADTWQEALGLAVQGRSAALVLPLETGFANDTVEVITEQDILGDRLVRRKKRKKDS
DAFLAELAALTPGDLIVHMDHGIGRYEGLQSIQVGQSPHDCVMLTYAGGDKLYIPVENLD
VLSRYGSESEGVMLDKLGGEAWQKRRARLKERIQEIAGELMKTAAERALRQAPAMVPEGS
AYDQFVDRFPWQETEDQDNAISDVLDDLAAGKPMDRLVCGDVGFGKTEVALRAAFVAAMA
GQQVAVVAPTTLLARQHYSGFAERFAGFPLNVGRLSRLVPEKEARTTREGLASGTVDIVC
GTHAILSKSVQFKRLGLVIVDEEQRFGVTHKEKLKQLRTDVHVLTLTATPIPRTLQMAMS
GLRELSTIQTPPVDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRIADMAEVEDW
LHKHVPEVKCITAHGQMSAGEVEERMSAFYEGKYEVLLSTTIVESGLDIPRANTIIIHRA
DRFGLAQLYQLRGRVGRSKLRAYAYLTTPAATALSEVAEKRLKVLGDLDSLGAGFQLASH
DLDIRGAGNLLGDEQSGHIREVGFELYQSMLEDAIMAARAGGVGLEKDTSGLSPQITVDA
PIMIPDDYVPDLAVRMALYRRLNDAESQQEIESLSAEMIDRFGALPQPTINLIKLIEIKR
QAIEAHIAKIDVGSRGTLVSFHNDSFPNPAGLIAYAERLQGTVKLRPDNKLVLTRAWGDP
KSRLNGLFQLTKGLSAVARKG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatttccagcgacttctctcggccacgacgcccctgaccctcgccgcggtgacg
cgcggcgcgcagccgctcgtgatggccgatctcgcccgcgcggcaaaaggacgcgccgtt
ttcattgccgacaacgaggcggcaatgagcgcgattgccgaggcggcgaaattcttcgcg
cccgagctcgacgtcctggaattcccggcgtgggactgccttccctacgaccgcgccagc
cctgccctctcggtcagcgcgcggcggcttgcggcgctctaccggcttcaggcgaagcgc
agcgggccgcaattgctggtcaccacggccaatgccgtgcttcagcgcgtgctcaccccg
ttccgtatccgggaatcggttcgcctgatcaaacacggcatggaaatcggccacgaaagt
ctgatcggtctgctgcgccgccaaggctaccagcgcaccgacaccgccatcgacgcgggt
gagttcgccgtgcgcggctcgatattcgacatcgtgccttcgggccttgaaggaggcctg
cgcctcgactttttcggcgacgagctggagacgctgcgcctcttcgataccggcacgcag
cgctcgaccggcaccgtcgccgagcacctgctcgtgcctgccagcgaagccctgctcgac
gacgatacggtcaagcgcttccgcagtcgctaccgcgagatgttcggcgcccatgccacc
gccgacccgctctaccaggcagtcagcgacggacgtcgcctggccgggatggagcactgg
ttgccgctgttcgaggaccgcctcgtcagcctcttcgaccatctgtcggacgacgacctg
atcgtcgccgacacttccgccgtcggtgcaaccgaagagcggctgggcgacatcgccgat
tatcacaaggcgcgcctcgacacctcgggtcagaaggcgggaagctaccgtcctctcgcg
atcgacgcgctttaccttggcagcgaggaactggagcaggccctgtccggcttcccggtc
caccgcgccgatgccttcgccaagcccgaaggcagcaagatcatcgacttcggctttgca
aacgcccgggatttcacgcccgagcgcgcccgcggcgacaatgcctacgaggctgcggcc
aagcacctccacgcggtcggcaaggccgggcgcaagccgatcctcgcggcctactcgacc
ggcagccgcgcgcggctcgtctcgatcctcggcgaagcgagccagaccaacaagtggggc
cccgaaccgcgccttgccgacacctggcaggaagcgctgggtctggccgtccagggccgc
tcggccgcgctggtgctgccgctcgaaaccggttttgccaacgacaccgtagaggtcatc
accgagcaggacatcctcggcgaccgcctcgtgcgccgcaagaagcgcaagaaggattcc
gacgccttccttgccgaactggcggcgctgacgcccggcgacctgatcgtccacatggat
cacggcatcggtcgctacgaaggcctgcagtcgatccaggtgggccagtccccgcacgac
tgcgtgatgctgacttacgcgggcggcgacaagctctacatcccggtggagaacctcgac
gtcctctcgcgctatggcagcgagagcgaaggcgtcatgctcgacaagctgggcggcgaa
gcctggcagaagcgccgtgcgcgcctcaaggagcgcatccaggaaatcgccggagagctg
atgaagacagccgccgagcgggccttgcggcaggctccggcgatggttcccgaaggatcg
gcctacgaccagttcgtcgaccgcttcccctggcaggaaaccgaagaccaggacaacgcg
atttccgatgtcctcgacgatcttgccgcgggcaagccgatggaccgcctcgtctgcggc
gacgtcggcttcggcaagaccgaggtcgccctgcgtgccgcattcgtcgctgccatggcc
gggcagcaggtcgccgtcgtcgcgccgaccacgctgctcgcgcgccagcactactccggc
tttgcagagcgattcgcaggctttccgctcaatgtcggtcgcctctcgcgcctcgtcccc
gaaaaggaagcgcgcaccacccgcgaagggctcgcctcgggcaccgtggacatcgtctgc
ggcacccatgcaatcctgtcgaagtcggtgcagttcaagcgcctcggcctggtcatcgtc
gacgaggagcagcgcttcggcgtcacccacaaggagaagctcaagcagcttcgcaccgac
gtccacgtcctgacgctgaccgcgacgccgatcccgcgcacgctgcagatggcgatgtcg
ggcctgcgcgagctgtcgaccatccagaccccgccggtcgaccgccttgcggtgcgcacc
tacgtgatggaatgggacgacatggtgatgcgcgaggcactgctgcgcgaacaccatcgc
ggcggccagagctttatcgtcgtcccccgcattgcggacatggccgaagtcgaggactgg
ctgcacaagcacgttcccgaagtgaagtgcatcaccgcacacgggcagatgagcgcaggc
gaagtggaagagcgcatgagcgctttctacgagggcaagtacgaggtcctgctgtcgacg
accatcgtcgaatccgggctcgacatcccgcgcgccaacacgatcatcattcaccgcgcc
gaccgcttcggtctcgcccagctctaccagctccgaggccgcgtcgggcgctcgaagctg
cgtgcctatgcctacctgacgacgcctgcagccaccgcgctttccgaagtcgcggagaag
cgcctcaaggtgttgggcgatctcgacagcctgggcgcgggcttccagctcgccagtcac
gacctcgacattcgcggcgcgggcaacctgctgggtgacgaacagtccggccacattcgc
gaagtcggcttcgaactctaccagtcgatgctggaagacgcgatcatggccgcccgcgcg
ggcggcgtcgggctggagaaggacacctcgggcctcagcccgcagatcaccgtcgatgcg
ccgatcatgattccggacgactacgtccccgatctcgccgtgcgcatggcgctctatcgc
cgcctcaacgatgccgagagccagcaggagatcgaatccctgtccgcagagatgatcgac
cgcttcggcgccctgccccagccgacgatcaacctcatcaagctcatcgagatcaagcgt
caggctatcgaggcgcatatcgccaagatcgacgtcggctcgcgcggcacgctggtcagc
ttccacaacgacagcttccccaacccggccggcctcatcgcctatgcggaaaggctgcag
ggtacggtcaagctgcgcccggacaacaagctcgtcctcacgcgcgcatggggcgatccc
aagtcgcgcctcaatggcctcttccagctgaccaagggcctgagcgccgtcgcgcgcaag
ggctga
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integrated database retrieval system
