Nanorana parkeri (Xizang Plateau frog): 108803458
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Entry
108803458 CDS
T04897
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108803458 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108803458 (CNOT1)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108803458 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108803458 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
108803458
NCBI-ProteinID:
XP_018430799
LinkDB
All DBs
Position
Unknown
AA seq
2274 aa
AA seq
DB search
IVTRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQTQFLIQECAALITKPNFISTLSYA
IDNPLHYQKSLKPSPHLFAQLSKVLKLSKVQEVIFGLALLNSCNSDLRGFAAQFVKQKLP
DLLRSYVDVDVSGSQEGGFQDIAIEVLHLLLSNLLFGQKGAFGVGQEQIVAFLKTLRRGP
SWPYPIPSNLKLALWHISNGCSVRELTVLHVEECRNIIVQFGVREVTAVQVARVLGMMAR
THSGLTDGISLQSISAPGSGIWSDGKDKNDSVQAHTWNVEVLIDVVKELNPNLNFKEVTY
ELDHPGFLIRDSKGLQTVVYGIQRGLGMDVFPVDLIYRPWKHAEGQLSFVQHSLINPDIF
CFADYPCHAVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSYPIKH
CPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HAMAEWYMRGEQYDQARLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFVQACMTFLKRRCPSILGGMAPEKDQPKSAQLPPETLATMLACLQACA
GSVSQELSETILTMVANCSNVVNKARQPPPGVMPKGRPPSTSSLDAISPVQIDPLAAMAS
LSISGSAAPHTQSLPAFPPNLGSAFSTPQSPAKAFPPLTTPNQSTAFSGLGALSSQLPGG
LGTGSLTGMGTGGLGLPAVNTDPFGQRKLSTSGLSQPTFQQSKFFVVXPKENQHFTKEID
DEANSYFQRIYNQPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQY
PDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYFFGIAALDRFKNRL
KDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALSQAQAQAQ
VPAKAPLPGPVIANAVTTSTATTSAKTVTITRPTGVSFKKDVPPSINTTNIDTLLVATDQ
NERTVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRVSIELN
FHSLYSNFMDALKNAEFNKMVLAETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITL
AKNKPILHTDLDVKSLLLEAYMKGQQEMLYVVPFVAKVLESSVRSVVFRPPNPWTMALMN
VLAELHQEHDLKLNLKFEIEVLCKNLVIDLNDLKPGNLLKDKDRLKSLDEQLSAPKKDVK
PPEQELLPNIISANEYAIRTAGKLWASVEKQESDAVFTATATAPPPSVTCAATVPPQPQY
SYHDIHVYSLAGIAPHITLNPTIPLFQTHPHLKQYVRQAIERAVQELVHPVVDRSIKIAM
TTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKTSFATSL
RAASPQQREMMEQAAAQVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEG
RRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQ
PMKQQAWATDDVAQIYDKCIAELEQHLHAIPPTLAMNPQSQALRGLLEAVALARNTRDAI
AALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDSRAYGAPWIYGFLTGLSGR
CLIECRDEYKYNVEAVELLIRNHLVNMQQYDVHLAQSMENGLNYMAVAFAMQLVKILLVD
DRSVSHVTEAEFFHTIETLMRINAHSRGNAPEGLPQLMDVLRSNFEAMIERAQGGPNFMM
HSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTD
DLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGE
ATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQLPYHRIFIMLLLELNAPEHVLETIN
FQTLTAFCNTFHILRPTKASGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLF
KYLAPFLRNVELSKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI
LSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTF
LSELRSNLQVSNEPGNRYSIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQ
NLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITR
NT seq
6825 nt
NT seq
+upstream
nt +downstream
nt
attgtgactcggcacggtccggaggcagacagacacttgttacgctgcctattctcacat
gtggatttcagtggcgatggtaaaagcagtggtaaagattttcaccagacccagtttctg
attcaggagtgcgcagcgctgatcaccaagcccaacttcatctccaccctctcgtacgcc
attgacaatccattgcactatcagaagagtctgaagccatctccccacctttttgcccag
ctgagtaaagtcctgaagctcagtaaagttcaggaggtgatctttggcttggctcttctg
aactcctgcaacagcgacctgcggggcttcgcggcgcagtttgtgaagcagaagctcccg
gatctcctgcgttcctacgttgacgtggacgttagtggcagccaagaaggtggattccaa
gatattgccatagaggtcctgcacctcctcctctccaatctccttttcggccagaaggga
gccttcggggttggacaggagcagattgtcgcctttcttaaaaccctgcgcagaggtccc
tcgtggccgtaccccatcccatccaacctgaagctggcactttggcatatttcgaatggc
tgctcggtgcgagaactgaccgtgctgcacgtggaagaatgccgcaatatcatcgttcag
tttggcgtccgggaggtgactgcggtgcaggtcgcccgggtcctggggatgatggcacgg
acacattctgggctcacggacggcatctccttacagtccatctcggcccccggcagcggc
atctggagcgatggcaaggacaagaatgacagcgtgcaggcccacacttggaacgtggag
gttctcattgatgtggtgaaggagctgaatcccaacctgaacttcaaggaggtgacgtac
gagctggaccacccggggttcctgatccgtgacagcaaggggcttcagactgtagtatac
ggcatccagagggggctgggcatggatgtgttccccgtcgatctcatctatcggccttgg
aaacatgcagaaggccagctctccttcgtgcagcattccttgattaatccggacatcttc
tgctttgccgactacccctgtcacgccgtggcaactgacatcctaaaggctccaccagaa
gacgacaatcgggagatagcgacatggaaaagtttggatctgatcgagtccctgcttcgg
ctggctgaggtgggccaatacgagcaggtcaagcagctcttcagctaccccatcaaacac
tgtcctgacatgctggtcctggctctgctccaaatcaacacttcctggcacaccctgcgc
catgaactcatctccaccctgatgccaatctttctgggtaaccatcccaactccgccatc
attttgcactatgcgtggcatggccagggccagtctccctccatccgccagctgatcatg
catgccatggcagagtggtatatgcgtggtgagcagtatgaccaggcccgcctgtctcgt
atacttgatgtggcccaggacttgaaggccttgtcaatgctgctgaatggtactccattt
gcctttgttattgatcttgctgcactcgcttcgcgccgggaatacctcaaactggacaaa
tggctgacggataaaatacgggaacacggggagccctttgtccaagcctgcatgacgttc
ctcaagcggcgctgtccttccatactgggcggcatggctccagagaaagaccagccaaag
agcgcccagcttccgcctgaaactctggccacaatgctggcatgccttcaggcttgtgcg
gggagtgtgtctcaggagctctctgaaactatccttaccatggtggccaactgcagcaat
gtggtgaacaaggcgcgtcagcctcctccgggggttatgcccaagggtcgccctcccagt
acgagcagcctggacgccatctctccggtacagatcgatcctctggctgcaatggcctcc
ctcagcatcagcggttctgccgcccctcacacacagagccttccagctttcccccccaac
ctgggctccgctttcagcacgccgcagtcaccagccaaggcattcccccccctcacaact
ccaaaccaatctactgcttttagtggcctcggtgctctgtcttcgcagttgccaggtggc
ctcgggacgggcagcctcactggaatgggcactggaggattgggccttcccgctgtgaac
acggacccatttgggcagaggaaactcagcacctctgggctcagtcagccgacattccag
cagagtaagttttttgttgtnnnnccaaaagaaaaccagcactttactaaagagatcgac
gacgaagccaacagctacttccagcgcatctacaaccagcccccacaccccaccatgtcc
gtggatgaggtgttggaaatgctgcaaaggttcaaagactccaacataaagcgggagcgc
gaagtcttcaactgcatgctgcgcaacctatttgaggagtatcgcttcttcccccagtac
ccggacaaggagttgcatattaccgcctgtttgtttggtggcatcattgaaaagggacta
gtcacgtacatggctctaggactggcactgcgctatgtactggaagcactgcgcaaacct
tacggatccaaaatgtatttctttggcatcgctgcactagataggttcaaaaacaggttg
aaggactatcctcagtactgtcagcacttggcttccatcagtcactttatccagttccct
catcacctgcaggagtatatagagtacggtcagcagtcccgggaccctccggtcaagatg
caggggtctattaccacaccaggcagtattgcactttcacaggcccaggctcaagcccag
gtccccgccaaagctcccctccccggcccggtaatcgccaatgccgttaccacatctacc
gccacaacctcagccaaaaccgttaccattaccaggcccaccggcgtcagcttcaagaag
gatgtaccgccatccatcaacactaccaacatagacacgcttctagtggccactgaccag
aacgagaggactgtggagccgccggaaaatgtgcaagagaagatcgccttcatatttaat
aacctgtcgcagtccaacatgacacagaaggtggaagagctgaaggagacggtgaaagat
gaattcatgccttgggtgtctcagtacctggtgatgaagagggtgagcattgagctgaac
tttcacagtctgtattccaacttcatggacgctctgaagaatgccgagttcaacaagatg
gttctagccgagacctacaggaacatcaaggtcttgctgacgtctgacaaggctgctgct
aacttctctgaccgctctctgctgaagaacctgggtcactggctgggcatgatcaccctg
gccaagaacaaacccatcttgcacacggacctggatgtgaagtcgctgctgctggaggcc
tatatgaagggacagcaggagatgctctatgtggtgccttttgttgctaaagtcctggag
tccagtgtcaggagcgtggtatttcgacctccaaacccgtggacaatggcgcttatgaat
gtcctggcggagctgcaccaagagcacgatctgaagcttaatctgaagtttgagatcgag
gtcctatgtaaaaatctggtgattgacctcaacgacttgaagccggggaatctcctgaag
gacaaggaccgcctgaagtctctggatgagcagctttccgccccgaagaaagacgtgaag
ccaccggaacaggagctgttacccaatatcatcagtgccaacgagtacgccatccgcacg
gcgggcaagctctgggcctcggtggagaagcaggagtctgacgcagtcttcacagctaca
gccacagccccgcctcctagcgtcacctgcgccgccacggttccgccgcagccgcagtac
agctaccacgacatccacgtctattcccttgctgggattgcacctcacataacgctcaat
cccacgatccctctcttccagacgcacccgcacctcaagcagtacgtacggcaggccatt
gagcgggcggtgcaggagctggtgcatcccgtggttgaccgttccatcaagatcgccatg
accacctgcgagcagatcgtacggaaggactttgcgctggattcggaggagtcccgcatg
cgggtggccgctcatcacatgatgcgcaatctgactgccgggatggccatgatcacctgc
agagagcctctgctgatgagtattgctaccaacctgaagaccagctttgccacttccctg
cgggctgcctccccccaacagcgggagatgatggaacaggccgctgctcaggtagctcag
gataactgcgagctggcctgctgcttcatacagaagacggcggtggagaaggctggaccg
gagatggacaagaggctggccacggaatttgaattgcggaagcatgccaggcaggaagga
cggcgctattgtgatcccgttgtactgacttaccaggcggagcggatgccggagcagatc
cgactgaaggtcggaggtgtggaccccaaacagctggctgtttatgaggaatttgcacgc
aatgttcctggcttcctccccaccaacgacttgactcaacccacaggattcctggctcag
cccatgaagcaacaagcctgggccaccgacgatgtcgcgcagatttatgacaagtgcatc
gccgaactggagcaacatctgcacgccatcccgcccacgctagccatgaaccctcagtct
caggccctgcgaggtctgctggaagccgtggcactggcccgtaacaccagggatgccatt
gctgctttggggctgctgcaaaaggctgtggaaggtctgcttgatgccactagcggtgcc
gatgccgacctcctgctccgataccgggaatgtcatctactcgtcctgaaagctctgcaa
gacagccgggcctacggggctccatggatatacggcttccttaccggcttgtctggcagg
tgtctgatcgagtgtcgggacgagtacaagtacaacgtggaggctgtggagcttctgatc
aggaaccatcttgtgaacatgcagcagtacgatgtccacctggcacagtccatggagaac
gggctgaactacatggccgtggccttcgctatgcagctggtgaagatcttgcttgtggac
gatcgcagcgtcagtcacgtgacggaggcggagtttttccacaccatagagactctgatg
cgtattaatgcgcactccaggggcaacgcaccagaagggcttccacagctcatggatgtg
ctccgctctaacttcgaggccatgattgaacgggcccagggcggccccaacttcatgatg
cattctgggatatctcaagcctcggagtacgatgatcccccgggactccgggaaaaggcc
gagtacctcctgagagaatgggtcaatctgtaccactcggctgcggccggacgggacagc
accaaggccttctctgcgtttgttgggcagatgcaccaacagggcattctgaagaccgac
gacctcatcacccgattcttccgcctgtgtacggagatgtgcgtggaaatcagctaccgc
gctcaggccgagcagcagcacaacccggccgccaaccctaccatgatccgagccaagtgc
taccacaacctcgacgccttcgtcaggctcatcgcgctgctggtcaagcactccggagag
gccaccaataccgtgaccaagatcaaccttctcaacaaagttctcggtatcgtggtcgga
gttctgctccaggatcatgaggtgaggcagagtgagttccagcagcttccgtaccatcga
atcttcatcatgctgctgctggagttgaacgccccggaacatgtgttagaaaccatcaac
ttccagaccctcaccgccttctgcaataccttccacatcctccggcccaccaaagcctcg
ggcttcgtctacgcctggctggagctgatctctcaccgcatcttcatcgcacgaatgttg
gcgcacactccccagcagaaggggtggccgatgtacgcccagctactgatcgacctcttc
aaatatctggccccgttcctccgaaacgtggaactctccaaacctatgcaaatcctctac
aagggcacactgcgcgtgctgctggttctgctccacgacttcccagagttcctctgtgat
tatcactatggcttctgtgacgtcatcccacccaactgcatccagctgaggaatctgatc
ctgagtgcctttccccgaaacatgcgacttccggaccccttcacccccaacctcaaggtg
gacatgttgagtgagataaacatcgctcccaggatcctcaccaacttcaccggagtgatg
ccgccgcagttcaagaaagacctggactcctacctgaagacccgctcgcccgtcaccttc
ttgtcggagctgcgcagcaatttgcaggtatccaacgagcccggaaaccgttacagcatc
cagctgatcaatgcgttggtcctttacgtcggcacgcaggccatcgcgcacatccacaac
aaaggcagcacgccctccatgagcaccatcacccactctgcccacatggacatcttccag
aacctggccgtggacctggacactgaagggcgctacctcttcctgaacgccatcgccaac
cagcttcggtaccccaacagccacacgcactacttcagctgcaccatgctgtacctcttc
gctgaggccaacaccgaggccatccaggagcagatcactcggtga
DBGET
integrated database retrieval system
