Neodiprion pinetum (white pine sawfly): 124211951
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Entry
124211951 CDS
T08966
Symbol
Not1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124211951 (Not1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npt03019
]
124211951 (Not1)
Messenger RNA biogenesis [BR:
npt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124211951 (Not1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124211951 (Not1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
124211951
NCBI-ProteinID:
XP_046467476
LinkDB
All DBs
Position
2:5576977..5591394
Genome browser
AA seq
2404 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLNKKNFRESAQEISVLVQWKGLEADRHLLRCLFSHVNFSTG
EQPEPNAKDYYQAQLLTQECINLLSKPSFISNLCYAIDRPLHQQKSLNPSSKFFLNLRKV
LKLTSVQEVAFAIALLHSENPDIQTLALEHIKKQLPELIKNYINSEISNKHHEGGLHDSS
PEVLHLILSQAFHEPNQFGLPIEAKEKFLKNLRRDFPRELVPVVLAPLLYPGDGEIPQAA
IELNMASNPMGFPFQDGNALVEMIMELGYGFTSSVDECRSALAGLGAREITPTAAARVLS
LMARTCSGLDDAGGLQSFWGGSGGNQDSSKEKSSDGSTPTTWNVEVFIQTLKDLQSTLSW
NEIIVKLDHTDFIIKDRQGLNLLITGLRLGLQHLGYPLDMFPVELFYRHWDNVEGQFSLV
QQVLKNPDIFCFADYPYHSVTVDVLKAAPEGDSKEAGTWRSLNVVELLLHMAERGLYGAV
QEIFKWPIQHCPDVLVLALLQINPPLTILRQELLSTLMPIFLGNHPNSAVVLHHAWHANS
VPIKPIIMHAMAEWYLRGEYDQTRLSRILDVAQDLKALSMLLNAQSFPFVIDLACLASRR
EYLKLEKWLTDKIRDHGELFIAACVKFLQRRCPHVMGPTMKEDPSTPKATQLPQETLNTI
LACLQVCAVNVAQDCSDVILTMVQNCNLMLSKASLSRPPPVIRHRALEPFNPATLGGQLF
SSSQVDPLGNLSSSLASMGLSSSLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFP
LMPLSAQLHAGPVGTQGPSVVPGGTTIAGLSRLGPPSGIEKARLPETSNLFPDMSQNVSK
EIEDEANSYFQRIYNHPPHPTLSIDEVLEMLKKFQDSGSKRERDVFNCMLRNLFEEYRFF
PQYPDKELHITAQLFGGIIERGLVNTYVALGLALRCVLDALRKPEASKMYYFGIAALDRF
KSRLKEYQKYCEHVRAIQHFSEFPPHLIEYVEYGLQGQEPPTRPQGQVLPKSIAAMLAPA
TIPYKTITTTTVTTTTTQAKPSTTPTTSLSARPSIANATNIDTLLVATDKEEKITAPPES
LQDKTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLD
CLKVPDVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNNPIFHID
IDLKSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPD
LKLNLKFEIEVLCKNLSIDVSELKPAIYLKDPEKLRNLEYQLSHPNKKPEVAANPLPPQP
PAEELVRPTTTGTVVPQQAPPVNTTPSLPTSPPEPRFNYMDISVTGIASQHITINNQLPL
FQAHPQLKQFVRSAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEIRMRTAAR
HMVRNLTAGMAMITCREQVLTSISTNLKQSFVAALMGTTPQQKELAEQAASIVAADNMEL
ACAFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRLKVGG
VTPQQMAVYEEFARNIPGFLPLSERDTQALFMPKPVTEPAATAFAANPAVAVATPQQVAA
YAAAVNNDEVGAMLEKLATEVDLLLAAMGPGVPPPQHAALHALLDSIILTRRSRDTGAAM
ALLKKAVEGLLDGPTISTGVNDGEIMLRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLT
ECREEFRYNFEAVDYLIRSHLLNLPQFDYALAQAMDAGAAMATAFAMQLVQLYLIDERQT
THVTESDLFNTIEILARMAHHRAPPEGISIFRLTSLIESLRANHDPAVLADRAPAGPTAH
IHSGILQVRTRDFDDPPGLMEKTEYLLREWVSMHHNPTHARDPTKAFGMFVHQMNIHGIL
KTDDLITRFFKLSTQMCVDLCYRALGEPNAAPSVVRAKCFHTLDAFVRLVALLVKHSGDT
ANTHTKINLLNKVLGIVAGVLLQDHEMRGTDFQQLPYHRIFVMLFLELCAPEPVLEAVNY
QVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFK
YLAPYLRNAELAKPVTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLIL
SAFPRNMRLPDPFTPNLKVDMLQEIAHAPRVLSNFASMIQPLSFKKELDSYLKARAPVTF
LSELRSNLQVSQEAGMRYNIQLMNALVLYVGTQAIAFIRSKGHTPNMSTIAHAAHMDIFQ
NLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERL
IVNRPHPWGLLITFIELIKNPTYNFWKHEFVHCAPEIEKLFESVARSCMVQKQVQPPPEP
EIPE
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcaaatttg
aacaagaaaaattttcgagaaagcgctcaggaaatatcagttttggtgcagtggaagggt
ctggaggcggacagacacttgctgcgctgtttgttctcacatgtcaacttttcaacggga
gagcagccagagcccaacgcaaaagattattatcaagctcagttgctcacccaagagtgc
attaatcttctcagcaagccgtccttcatatcaaacctctgttacgccattgatcgcccc
ttacatcaacaaaaaagcttaaatccatcatcaaaattttttctcaatcttcgcaaggtt
ctgaaattgacatctgtacaagaagttgccttcgcaatagcgttgttgcattctgaaaat
ccagatatccagacgttagcattggaacacattaaaaaacagctacctgaattgataaag
aattacataaactcggaaataagcaataaacaccacgaaggaggtcttcacgattcgtca
cctgaggttctacatctcatactgtcgcaggcatttcacgaacccaaccagtttggcctg
cctatcgaagcaaaggaaaaatttctcaagaatttaaggcgtgattttccccgtgagctg
gtaccggtggtgctagcaccactcttgtatccaggcgacggggaaattccgcaagcagca
attgaattaaacatggcttccaatccaatgggatttccctttcaggatggaaatgctttg
gtcgagatgattatggaactcggatatgggttcaccagtagcgttgacgaatgccgctcc
gcccttgctggactgggggcccgagaaattacaccaaccgcagctgctcgggtgttatcc
ctcatggctcgtacatgttccggtcttgatgatgctggtggtttacagtcattctgggga
ggttccggtggcaatcaagattccagtaaagagaaatcttctgacggcagtacacctact
acatggaacgtcgaagtgttcattcagactctgaaagatcttcaatctactttatcatgg
aatgagatcatagttaaacttgaccacactgattttataatcaaggacagacaaggctta
aacctgctaataacaggcctgcgtctaggtcttcagcatctaggatatcctctggatatg
ttccctgttgagttattttaccgacattgggataatgtagaaggtcaattctcattggta
cagcaagttctgaaaaatccagacatattttgttttgctgattacccgtaccattcggta
acagttgatgttctcaaagctgcaccagaaggcgacagcaaggaagccggaacctggcga
tcactgaatgtagtcgaacttctgcttcacatggctgaacgaggtttatacggcgcagtt
caggaaatattcaaatggcctattcaacattgtccggacgttctcgtcctggccctactt
cagatcaatcccccactcacgatacttcggcaggaattgctcagcactttgatgccgatt
ttccttggcaatcatccgaattccgctgttgttttacaccatgcttggcacgccaacagt
gttccaatcaagccgataataatgcatgccatggccgagtggtatttgcgtggggaatat
gatcaaacaaggctatcgcgaatcctagatgtggctcaggatttgaaggctctttcgatg
cttctgaacgcccaatcttttccttttgttatcgatctggcctgtctagcctcacgaaga
gaatatttgaaactggaaaagtggcttacagataagattagagatcacggagaattgttt
attgctgcttgcgtaaaattcctacaacgaagatgtccgcacgttatggggcccactatg
aaagaagacccttcaactccgaaggctactcaacttcctcaggaaacactcaataccatt
cttgcttgcctgcaagtctgcgctgtaaatgtggctcaagactgttccgatgtgattttg
acaatggttcagaactgcaatctaatgcttagtaaagcaagcctaagcagaccacctcct
gtcattagacacagagcgcttgaaccgttcaatcctgctactttaggaggacagctcttt
tcgtcatcgcaagttgatccattgggaaatctcagctcaagtttagcttctatgggcttg
agctctagtttgggacctcctagcagttctgcttttaatcttcctggggcccttggtcct
ttggtttctgcacctggttcaccctcacgcttaatgggtccatcaccgagcccattccct
ttgatgccgctttccgcccagcttcacgcagggcccgttggaacgcaaggaccatcagtt
gtaccgggtggtacaacgatagcaggattaagccgtcttggtccaccaagtggtattgaa
aaagctagattgccagagacttcgaatttgtttcctgatatgtcgcagaatgtatctaaa
gaaattgaagacgaagcgaacagctattttcaacgcatatacaatcaccctccacatccc
acattgtcgattgacgaagtacttgaaatgttgaaaaaatttcaagattccggtagcaaa
agagagcgtgatgtgttcaactgcatgttgcgcaatttgtttgaagagtaccgtttcttt
ccgcaatatcctgataaggaattgcatataacagctcaattgtttggaggtattattgag
agagggcttgttaacacttatgtcgccttgggattggcgttacgctgtgttcttgacgct
ttgagaaaaccggaggctagtaaaatgtattattttggaatcgctgcattggaccgcttc
aaaagtcggttaaaggaatatcagaagtattgcgaacatgtcagggctatccaacacttc
agtgaattcccaccacatcttatcgagtatgtcgaatatggcctccagggacaagaacct
cccaccagacctcagggtcaagtacttccaaagtcaatagctgccatgctagcaccagct
actattccttacaaaactatcactacaacgactgttacaacaactactacccaagccaaa
ccatctacaactcccactacgtcgctctctgccaggccatcaattgcaaatgcgaccaac
atagacacattgcttgttgccacggataaggaggagaagattacagcaccaccggaaagt
ttgcaagataaaactgcatttatattcaataatttgagtcagcttaatctgcaacagaaa
tgtgatgaaattcgagagatagttaccgaagagtactggccatggatggctcagtattta
gttatgaaacgtgctagcattgaattgaatttccatgccctttattccaactttcttgac
tgtcttaaagtacccgatgtgaataaaatggtcaccagagaaactttccgaaacatcaag
gtactgctacgaagcgacaaaggaatagcaaacttttctgaccgctctctattgaagaac
ttgggtcattggctgggaatgctgacattaggaagaaacaatccaattttccatattgat
atagatttgaaaagcttacttgtcgaggcgtatcacaaaggtcaacaagaactcttgtat
gttgtgccattcgtagctaaagtattggaaagctgtgcaaaaagccgtgtctttcgtcct
cccaatccctggactatggcaataatgaatgttttggctgagttacatcaggaacctgat
ctaaaactgaatctgaaatttgaaattgaggtgctctgcaagaatctgagtatcgacgta
tccgaattgaagccagccatctatttgaaagatcccgaaaaactgagaaacttggaatac
caattatcacacccgaataagaaaccagaagtcgctgcaaatccgctcccaccacagcct
cctgctgaggaacttgtcagaccaacaacaactggaactgtagtcccacaacaggcacct
cctgtaaatacaacaccttcattgccgactagtccacccgaaccacggttcaattacatg
gatatatcagtgactggtattgcttcacagcacatcactatcaacaaccagctgccactt
ttccaagcacacccacaactcaaacaatttgtgcgttccgctgttgaacgagctattcaa
gagtggattcaccctgtcgtagatagatcaataaaaatagcattgacaacaagtgaacaa
attgtcagaaaagattttgcactcgaccccgaagagatcaggatgcgtactgctgcccgt
catatggtgcgcaatctcactgccggaatggccatgataacgtgccgagaacaggtactc
acttcaatcagcacaaacctgaagcaatcatttgtagctgcactgatgggaactactcca
caacaaaaggagctagctgaacaagcggcgagtatagtggctgctgataacatggaactt
gcgtgcgcatttgtacagaaaacagcgattgaaaaagctattcctgagatggataagaga
ctactaaatgagatagaactacgtaagattgctagacaagaaggaaggaggtactgtgat
cccttagctaaatatcaggcagagagaatgcctgaacaaataagacttaaagtcggagga
gttactccacaacaaatggctgtttatgaggaattcgcaaggaacattccagggtttcta
cctctttctgaacgtgacactcaagctctctttatgcctaagccggtcactgaacctgct
gctacagcattcgcggcaaatcctgcagttgcagttgctacacctcagcaagtcgcagca
tatgcagctgctgttaacaatgacgaagttggtgccatgttagaaaaacttgccacagaa
gtagatctacttttggcagctatgggtccaggtgttccgccaccacaacacgctgcgcta
catgcacttctcgattctatcatccttaccagaagatccagagacactggtgctgctatg
gcgctattgaaaaaggctgtagaaggattgctagatggtcccaccatttcaactggtgtt
aatgacggagaaataatgctgcgatacagggaattacatcttcgtatccttaagtgcctt
caagatccacgagcttatggcatgcagtggacaaacaaacatgtaactcgatgtttaacg
gaatgcagagaagagttccgctacaattttgaagctgtcgattacttgataagatctcac
ttgttgaacctaccgcaatttgattacgctctggctcaggcaatggatgctggtgctgcc
atggctactgcttttgctatgcaactagtgcagctctatctaattgatgagagacaaact
actcatgttacggaatctgacttattcaatacaattgaaattctagctagaatggcacat
catcgagcaccacctgaagggatttcaatattcaggcttacgagtttgatagaatcatta
cgggctaatcatgacccagctgtactggcagacagagccccagctggaccaactgctcat
attcactcagggattctccaggtgagaactcgggatttcgacgatcctcctggactgatg
gaaaagaccgaatacttgttacgtgaatgggtatccatgcaccacaatccaacgcacgcc
cgtgatccaacaaaagcattcggaatgtttgtccaccagatgaatattcacggaatatta
aaaactgacgatctcattacacgattcttcaagctcagtacacaaatgtgcgttgatctc
tgctacagagcactgggtgaaccaaatgctgctccttctgtggtgcgtgcgaagtgcttc
catacattggatgcctttgttcgtcttgttgcgcttttggtaaagcattcaggggacact
gcaaatacgcacactaaaatcaacctcctgaacaaggttctgggcattgtcgccggtgtt
cttctgcaagatcatgaaatgcgcggaacggactttcaacagctaccttatcatcgaata
tttgttatgctgttccttgagctgtgtgctcccgaacctgtgcttgaggccgttaattac
caagtactgactgccttctgccacaccctgcacatattacgtccagcaaaggcctcgggc
ttttgttacgcttggttggagctggtttcgcaccgagtatttattggtcgtatgctcgct
attactccacaacaaaaatgctggggcatgtacgctcagttgctcattgatctcttcaag
tatcttgcaccatatctgcgcaatgctgagctagcaaagccagtaactctcttatacaag
gggacgctgcgagtactgttggttttattacatgacttcccagaatttttatgcgactat
cattacggattctgcgatgtgatacccccaaattgtattcaaatgagaaacctcattctc
agtgctttcccgagaaatatgcgcctccccgatccttttaccccgaatttgaaagtcgac
atgctgcaagaaatcgcccatgcaccaagagttctatcgaactttgcctctatgatacaa
ccgcttagtttcaagaaagaattggattcatacttgaaagccagagcccctgttactttc
ctttcagaacttcgcagtaacttgcaggtttcacaggaggctggaatgcgctacaatatt
caattgatgaacgcccttgttctgtatgtcgggacacaggctatagcattcattcgtagc
aaaggacatactcccaacatgtcgacaattgctcatgccgcacacatggatatattccaa
aatctagctgttgatctcgatacagaagggcgttacttattcctaaatgcaattgcaaat
cagttgcgatatcccaacagtcatacgcattatttcagttgtaccttgttgtacctattc
gctgaagctaacactgaagctattcaagaacaaataacacgagtccttcttgaaaggctg
attgtcaacagaccacatccctggggacttctcattacctttattgaactcattaaaaat
cctacctacaacttctggaagcatgagtttgtccactgtgcaccagaaatcgaaaaatta
ttcgaatcagtggctcgatcgtgtatggtacagaaacaggtccagccacctccagaaccg
gagatcccagagtga
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integrated database retrieval system
