Nocardioides renjunii: SHK17_04105
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Entry
SHK17_04105 CDS
T10238
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
nrn Nocardioides renjunii
Pathway
nrn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SHK17_04105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nrn03021
]
SHK17_04105
03400 DNA repair and recombination proteins [BR:
nrn03400
]
SHK17_04105
Enzymes [BR:
nrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SHK17_04105
Transcription machinery [BR:
nrn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SHK17_04105
DNA repair and recombination proteins [BR:
nrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SHK17_04105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
HHH_5
DUF4843
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
WQQ23162
LinkDB
All DBs
Position
871598..872614
Genome browser
AA seq
338 aa
AA seq
DB search
MLIAQRPTLTEETVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGASVTSIKVDSVL
HEFSTIEGVTEDMTEIILNLKGIVVSSEHDEPVVMYLRKSGAGDVTAADITPPAGVEVHN
PELKIATLSDKGKLEMELVVERGRGYVSSVQNKGADNEIGRMPVDSIYSPVLKVTYKVEA
TRVEQRTDFDKLVIDVETKPSIRPRDAIASAGKTLVELFGLARELNVEAEGIDIGPSPVD
EQLAADLALPVEDLQLTVRSYNCLKREGIHTVGELISRSEQDLLDIRNFGAKSIDEVKAK
LVEMGLSLKDSAPGFDPHAALAAYGDDDDDAFIEDEQL
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgcttattgctcagcgcccgaccctcacggaagagaccgtcgacgagttccgctcgcgg
ttcgtcatcgagccgctggagccgggcttcggctacacgctcggcaactccctgcggcgt
acgctcctcagctcgatcccgggtgcctcggtcacgagcatcaaggtcgactccgtcctc
cacgagttctcgaccatcgagggcgtcaccgaggacatgaccgagatcatcctcaacctc
aagggcatcgtggtgtcctccgagcacgacgagccggtcgtgatgtacctgcgcaagtcc
ggtgccggtgacgtcaccgccgccgacatcaccccgcccgccggtgtcgaggtgcacaac
cccgagctgaagatcgccacgctgtccgacaagggcaagctggagatggagctcgtcgtc
gagcgcggccgcggctacgtctcctcggtgcagaacaagggcgccgacaacgagatcggc
cgcatgccggtcgactcgatctacagccccgtgctgaaggtgacctacaaggtcgaggcg
acgcgtgtcgagcagcgcaccgacttcgacaagctcgtcatcgacgtcgagaccaagccg
tcgatccgtccccgcgacgcgatcgcctcggccggcaagacgctcgtcgagctgttcggc
ctggcccgtgagctcaacgtcgaggccgagggcatcgacatcggcccgtcgccggtcgac
gagcagctcgccgccgacctggccctgccggtcgaggacctgcagctcacggtccgcagc
tacaactgcctcaagcgcgagggcatccacaccgtgggtgagctcatctcccgctcggag
caggacctgctcgacatccgcaacttcggcgccaagtccatcgacgaggtgaaggccaag
ctcgtcgagatgggcctctcgctcaaggacagcgcgcccggcttcgacccgcacgccgcc
ctcgccgcctacggcgacgacgacgacgacgcgttcatcgaggacgagcagctctga
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