Ehrlichia sennetsu: NSE_0678
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Entry
NSE_0678 CDS
T00329
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nse
Ehrlichia sennetsu
Pathway
nse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NSE_0678 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nse03021
]
NSE_0678 (rpoB)
03400 DNA repair and recombination proteins [BR:
nse03400
]
NSE_0678 (rpoB)
Enzymes [BR:
nse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NSE_0678 (rpoB)
Transcription machinery [BR:
nse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NSE_0678 (rpoB)
DNA repair and recombination proteins [BR:
nse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NSE_0678 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ABD46017
UniProt:
Q2GD90
LinkDB
All DBs
Position
complement(598275..602351)
Genome browser
AA seq
1358 aa
AA seq
DB search
MSEFHRLYFDELLFDFPDLVKVQKDSYASFVGGGDTVFSISDIFASVFPVNDGYGRASLE
FVSCRMGEPKHDEYGCVERGITYSAPLRAILRLVVFGDETSGEGSEGVSTEPAVKDVREQ
EIYMGDIPIMSKNGTFIINGVERVVVSQMHRAPGVFFDNDKARSISGKLNYIARIIPYRG
SWLDFEFDAKDVLYFRIDKKRKLPVTFLLRALGLSNKDIFAQFCEVSECRLTKDGKWTVC
FVPEKFKGVRLQYDLINAETGELVLAKGNRISIVLARNLYAKGLRYCYMDLEVMKDMYLA
DDLVSTKGEVLLPHGTKLTKEHVAKLEFLDVDSIKLVELKGNYVFSTVLQYDCSYEEAML
SIYRVVRPGEIPSVESAEKLFESLFFSPERYDLLNVGRIRLNAKFNLSHDESLTVLTKED
IFCTVKELALLQREVGDVDDIDHLGNRRVRSVGEFMDNQFRIGLVRMAKVIVENMATADF
DTVMPCEMINSKILGAVIREFFMSSALSQFMDQTNPLSEITHKRRISALGPGGLNRGRAG
FEVRDVHTTHYGRICATETPEGATIGLINSLAIYAKINKYGFIETPYRYVRDGRVTDEVT
YLSAIDEIKANICQASVRVDEEGYIVDDLVYCRRNYENVFIPRSEVQFADVSAKQIVSVA
ASLIPFLENDDANRALMGSNMQRQAVPLIMPEAPLVGTGMEGYVARGSGAVIVAKRAGVV
QYIDARNIVVASESKDDFWIDSYTLCKFRKSNHNTCIHQRCVVHQGQRVKKGDILADGPA
IQKGELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVVRDTRLGPE
EITRDVSGVAEEFLHCLDEFGIACVGANVEAGDVLVGKVTPKSSSPVTPEEKLLRAIFGE
KAIDVKDSSLYLPPGVSGCVVDVKVLQRRGIEKVGRALLIEKQAIDAEKTRRDHELAVLT
NYIYSLLKEMLVGKVALSTLAPISKGDLITEEALEKIDRENWWKISVDGISSIKLLRQRF
VDRFDEINKTYEENFEKIRGDDDLAQGVLMVVKVFVAVKHTLQPGDKMSGRHGNKGVISR
IVPAEDMPYLADGTPVDIILNPLGVPSRMNVGQILETHLGWAAYNLGKKISKLLDEGNYS
EVKSLVLEIYKNDRKMMARLNEMTDAEIVEYSRSLRGGVPVAASVFEGPKTDEIERLLVL
AGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLKLHHLVNDKIHARSIGSYSLITQQPLGG
KSHFGGQRFGEMECWALQAYGATFALQEMLTIKSDDVVGRVNVYDSIVRGDNDFYYGVPE
SFNVMMNELRALCLNVEFCSDLEKKKDFGDLALAASGQ
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatttcacaggttatacttcgatgagctgctttttgactttcctgatctggtg
aaagtccaaaaggattcttatgcttcgtttgtaggtggaggtgatactgtattttcaatc
agcgatatttttgcatccgtttttccggtgaatgatggatatggtagggcttcccttgag
tttgtgagctgcaggatgggtgagcctaagcatgacgaatatggctgtgttgaaagaggt
attacgtactcggcgccgctcagggcaatacttaggctagttgtttttggtgatgagaca
tctggcgaaggtagtgagggggtgtcaactgaaccagcggtaaaggatgtacgagaacag
gagatatacatgggtgacatacccattatgtctaagaacgggacgttcataataaatggt
gtggaaagggttgtcgtatctcagatgcatcgtgcacctggggtgtttttcgataatgac
aaagctaggtcaatctccggcaagctcaattatattgcgcgtatcataccttataggggt
tcttggttggactttgagtttgatgctaaggacgtattgtattttcgaatagataaaaag
agaaaacttccagtcacttttttgcttagggctctggggttgtcgaataaggatattttt
gctcagttttgtgaggtctcggagtgtcgcttaacgaaagatggtaagtggactgtttgc
tttgttccggaaaagtttaagggggttcgtcttcagtatgatcttatcaatgcggagaca
ggtgagttagttttggcaaagggcaacaggatttccatagtattggcgcgaaatctatat
gcgaaagggttacgttattgctacatggacttagaagtcatgaaggacatgtaccttgct
gatgatcttgtctcgactaaaggagaagttcttcttccacatggtacgaagttgaccaag
gagcatgttgcaaagttggaatttcttgatgtggattctattaagttggttgaactgaag
ggtaattatgtattcagtactgttttgcagtacgattgctcttatgaagaagcaatgctc
tcgatatatagagttgttcggccaggtgagattccttctgttgagtctgcagagaagctg
tttgagtcgctctttttttctcctgagaggtacgatctcctgaacgtcggtaggatcagg
ctaaatgccaagtttaatctaagtcatgatgagagtctgactgttttgactaaggaggac
attttttgcacggtaaaggagttggcccttttacaaagagaagttggggacgtcgatgac
atagatcatcttggcaataggcgggttaggtctgttggggagtttatggataatcagttc
cgcatcgggcttgtgaggatggccaaggttattgtcgaaaatatggcgactgccgacttt
gatacggtgatgccgtgtgaaatgataaattctaagattcttggggctgtcattcgtgaa
tttttcatgtcttcggcactttcgcagtttatggatcagactaacccactctcggaaatt
acgcataaacgccgtatatcagctttaggtcctgggggattgaatagaggtagggcggga
ttcgaggtgcgagatgtgcataccacgcattacggtaggatctgtgcaacggagaccccg
gaaggtgcgactattgggctgataaatagtcttgctatatatgcaaagattaataagtat
ggctttatagagaccccctaccgctatgtgcgtgatggccgtgttaccgacgaagtcaca
tatctttctgcgatcgatgaaataaaggcaaatatttgtcaagctagtgttcgtgtcgat
gaagaaggctatatagtcgacgatttggtgtactgtcgtaggaattatgagaatgttttt
attccgcgtagtgaggttcagtttgcggatgtatcggctaagcaaatagtctcggttgct
gcctctttaattccttttctggaaaatgatgatgcaaatagagctctcatgggttccaac
atgcaaagacaagctgtaccacttatcatgcctgaggcaccattggttgggactgggatg
gaaggctatgtagcgcgtggttctggtgccgtaatagttgccaaacgtgcaggtgttgtg
cagtatatagatgccaggaatatcgttgttgcgtcggagtcgaaggacgatttctggatt
gattcttatacgttgtgtaaattcagaaagtcgaatcacaatacatgtatacatcagcgt
tgtgttgtccatcagggacagcgtgttaaaaaaggtgatattcttgctgatggaccagcg
attcaaaagggtgaactagctcttggaaggaatttggtggtggcttttctctcgtggcgt
ggctacaactttgaggattccgttgtcatttcaagtaatgttgtccgtgatgatcttttc
acttcagtgcatttagaaggttttgaatgtgttgttcgcgatacaaggttaggtcctgag
gaaataacaagggatgtttctggtgtggcagaagagtttttacactgtcttgatgagttt
ggcatagcatgtgttggggcaaacgtcgaggctggagatgttctggtaggaaaggtgacg
cctaaaagtagttcacctgtgacacccgaagaaaagttgcttcgtgctatatttggagag
aaagcgattgatgtgaaagattcgtctctgtacttaccacctggtgtatctggttgtgta
gtggatgtaaaagtactgcagcgtcggggtatagaaaaggttggtagggcattgttaata
gagaaacaggcgatcgatgccgaaaaaacgaggcgtgaccatgagcttgcggtgttgacg
aactatatttactcgctcctgaaggagatgctggttggtaaggttgctcttagtacttta
gcaccaatctcaaagggtgatttgattacagaagaggctcttgaaaagatagatagggag
aattggtggaagattagtgttgatggaatctcttcgataaagcttttgaggcaaaggttt
gttgatcgctttgacgaaattaacaagacctatgaggagaatttcgaaaaaattcgaggt
gatgatgatttggcgcagggtgtcctgatggtggtaaaggtttttgtcgctgtgaagcat
acccttcaaccaggtgataagatgtctggtaggcatggaaataagggtgttatttccagg
atagtcccagctgaggatatgccttacttagctgatggtacgcctgtggatatcatactt
aaccctttgggtgtgccttcaagaatgaatgtgggtcaaattctcgagacacatcttggt
tgggctgcatacaatttgggtaagaaaatctcgaaattgcttgatgaaggtaactactct
gaggtgaagtcattggttcttgagatttacaagaacgataggaaaatgatggcaagactt
aatgagatgacggatgctgaaatagtcgagtattcgcgttctttgagaggcggagttcct
gttgcggcttcggtttttgaaggtcctaaaacagacgagatagaaaggctgttagttctc
gcaggaaaagatccttcgggtcaggaagtcttgtatgatggtgtaactggagagaagttt
gataggaaggtcactgttgggtgtaagtatatgctgaagttacatcacttagtgaatgat
aagattcatgcgcgttctatcggttcctacagtttgataacgcagcaaccactcggagga
aaatcacattttggtggacagcgttttggtgagatggaatgctgggcgttgcaagcttat
ggtgcaacatttgcattacaggagatgcttactatcaaatctgacgatgtggtaggtcgc
gtcaatgtatatgattcgatagtgcgtggtgataatgatttttattatggtgttcccgag
tcctttaatgtaatgatgaatgagttaagggccttatgtttgaacgtggagttttgttcc
gatttggaaaaaaagaaagattttggtgatcttgcattagcagcatcgggacaatag
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integrated database retrieval system
