Nostoc sphaeroides: GXM_09823
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Entry
GXM_09823 CDS
T06325
Name
(GenBank) recQ, ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nsh
Nostoc sphaeroides
Pathway
nsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GXM_09823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsh03019
]
GXM_09823
03400 DNA repair and recombination proteins [BR:
nsh03400
]
GXM_09823
Enzymes [BR:
nsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GXM_09823
Messenger RNA biogenesis [BR:
nsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GXM_09823
DNA repair and recombination proteins [BR:
nsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GXM_09823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
Viral_helicase1
ResIII
AAA_22
AAA_30
SLFN-g3_helicase
AAA_11
ZapA
AAA_16
HTH_Crp_2
Cas3-like_C_2
Helicase_C_2
MarR_2
TrmB
malic
HTH_IclR
GGDEF_2
PrnB
HTH_24
Motif
Other DBs
NCBI-ProteinID:
QFS52329
UniProt:
A0A5P8WKD7
LinkDB
All DBs
Position
pGXM01:complement(113884..118455)
Genome browser
AA seq
1523 aa
AA seq
DB search
MRYLAWELLPDGYPRNLIPKLKLKLTPAKDTRWNKLQKFHPKLNIQALNTYLEGLSKNNI
ENLGVVVFLKWLFQLRKPTIRRPTWVERQFPTFQEAENQVFSLLLDQNNLEEELKDFFNF
GTFRPHQLEIIQALLKGETVPLGLLPTGGGKSIIFQLPALILSRYRRGLSIIVSPLQALM
ADQVQNLKDKLKEGKLSDYAERVELLTGTQCLEEQRRVIEAVWDGQVDILYLSPERLRQP
TIQRILKNRLPHLWVLDEAHTLSQWGHDFRPDFLRITKTLQRLYKNQQDSSIRCGFFTAT
ATLQVVEDLEIAVRKLDGLCSGSLERLPIGGKSFQWRDDITTHVEIVPRPKSLDDIPDSE
RLEKTKNYLKKQRKEYREKYPNLGSGVAIVYVPTRRMAEKYAENLNQANFKTTYFHSRIS
NKQQVLEDFKTGKIEVVVATNAFGMGIDREGIHTVIHVAPPATPEAYLQEIGRLARKEWE
RGSAYLFWHPDDFNWIFEQQGRSRISFHALRSCWDLIRPRLKTREAWVSALDLAKPLALE
DPEDLEILETQARVAIYYLEKAGLVQEEESCPCYLNIRLKRELNLEEIDKLSCDANKLGS
FLFDIGFRENQSDIQLDVREIALVTGISPPSVIKIVRQLVNVGLVDWEYKIAFRFENQYQ
NKLKSFKLSTEAFLDWLRAESPEIDEEKSILLHLEALEEKLGRKARIADALKILTKLELA
HYTKETRDTTRLFIKTDETLTQWLKKADRTWDKQWQELNHIENILDNLFNEKNWKREDSQ
LLDLAELEICIDACKYPTLDLLKILAFMQRLGLVVLGRGDLGNLMLYRLLPGRKRKNWYE
GVYLPLDKHYAQRDRRIQIMHQVLDAGTQNEPQLIQILEDYFTLSLDEFSQRYENKHQNP
PIVENILENLNPTQHKIVTNDQSRALLVLAGPGSGKTHTIVSRVAYLVSARGVPPERILV
LAYNRTAAAEVRKRLHQLLGKRGTLVDALTFHALAAKLTGLRSRDVPREITGEARFRWLL
EQAIIHLQENHPGYQYILVDEYQDVNELHYQIITRLAGFDSLDEDKSQKSFLMAVGDDDQ
NLFEWNGAKVEFIRRFCQDYDVPTEDIIPLIQNYRSRPTIVEFANSFIERAIAPEKRLKG
VNERIQAVNNQQPGKVFLGEYGHLYDVAEWITEKIAEILTQPGEIQKEKIAVLAHRWEDL
RFLQHVLRDSWGNDQDIAYQLYNTQDNLRPIESCVGQAVLDRLREQPNLHISNPQAHLEK
LRQELGYSDRDAAWSSLLHALSGCLQMTQEDMAYLLEEVRPVRPGQVILSTFHSAKGSEF
SHVFVLEDGFVDTNNLESRARELYVGFTRAKEQLYILFSSNKGSTHPILLDVFNNMNSPQ
PNQYIQNVQIPQFHIPPSIRYQWFLDPRDLFLSQQMVTNQCGQRRIKAYAHEWGHLYLMP
QNNISCNYLENGNLSGGAVAVLSNRGKERLQHFIHPNQHLAVRGHTIFRVERDDQFFQNV
QEQGQEDHHYVVLPYFEVEEFLF
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgcgctacttggcatgggaattacttcctgatgggtatcctcgtaatcttattcctaaa
ctcaaactaaaattaacgccagcaaaagatactagatggaataaacttcaaaagttccat
ccaaaattaaatattcaagctttaaatacttatttagagggattgtcaaagaataatatt
gaaaacttaggagtggttgtatttttaaagtggttattccagctaagaaagcctacaata
cgccgtcctacgtgggtagaaaggcaatttccaacctttcaagaagctgagaatcaagta
ttttcattgctacttgatcaaaataatcttgaagaagagcttaaagatttctttaacttt
ggcacattccgcccacatcaactagaaattattcaggcattactaaaaggggaaacagtt
cctttaggtcttttacccactggaggaggtaaaagtataattttccagcttcccgctctt
attctgtcccgctatcgtcgaggtttgtctatcattgtttctccacttcaagcattgatg
gcagaccaagtacaaaatttaaaggacaaacttaaagaaggaaaattgtctgattatgca
gaacgggtagaacttttaacaggaacacagtgtcttgaagaacaacgccgtgttattgaa
gctgtttgggatgggcaggtagatattctatacctatctcctgagcgactgcggcaacca
acaattcaacgtattcttaaaaatcgtcttccccatttatgggtacttgatgaggctcac
actttgtctcagtggggacatgactttcgaccggactttttacgaattaccaaaactctt
cagcgactttacaaaaatcagcaggatagctctattcgttgcggtttttttactgctacc
gcaacattacaagtggttgaagaccttgaaattgctgtcagaaaacttgatggattatgc
tcaggttccttagagcgtttacctattggtggaaaatctttccaatggcgcgacgacatc
acgactcatgtggaaattgtgccaagacctaagtcacttgatgacataccagactcagag
cgacttgagaagactaaaaactatctgaaaaaacagcgaaaagaatatagagaaaagtat
cctaatttgggttccggtgttgctattgtttatgttcctactcgccgtatggcagaaaaa
tatgcagagaatctcaatcaagctaactttaaaacaacgtatttccactcccgcatttct
aacaaacagcaagtcttggaagattttaaaaccggaaaaatagaagtagttgtcgcaact
aacgcttttggtatgggtattgaccgagaaggcatccacactgtaattcatgttgcccca
cctgctaccccagaagcttacttacaagaaattggtaggcttgcccgtaaggaatgggaa
cggggttcagcttatctgttttggcatccagatgattttaactggatatttgagcaacaa
gggcgatcgcgaattagttttcatgctctcagaagttgctgggatttaattcgaccccga
ctaaaaactagagaagcttgggtaagtgctttggatttagcgaaacctctggctttagaa
gacccagaagacttagaaatactggaaactcaagcacgggtcgctatctattatttggaa
aaagctggattagtacaagaagaagaatcttgcccttgttacctgaatattcgcttgaaa
cgagaacttaacttagaagaaattgacaaattaagctgtgatgcgaataaattaggttct
tttctctttgatatcggttttagagaaaatcaaagtgatattcaactagatgtacgagag
atagctttagtaacgggtatatcgcctccatctgtaattaagattgtgcgccaattggtt
aatgtaggtttagtagactgggaatataaaattgcttttaggtttgaaaatcaatatcaa
aataagctgaaaagttttaaattaagtactgaagcttttttagattggctccgggcagaa
tcaccagaaatagatgaagaaaaatctatattgcttcatcttgaggctttagaagaaaaa
ttaggcagaaaagcacgtattgcagatgccttgaagattttaactaaattagaattagct
cattacactaaagaaactcgtgatacaactcgcttatttataaaaacagatgaaacacta
actcagtggctaaaaaaagcagatagaacttgggataaacaatggcaagaacttaaccac
attgaaaatattctagacaatttatttaatgagaaaaactggaaaagggaagatagccaa
cttcttgatttagcagaattagaaatatgtatcgatgcttgtaaatatccaacactagac
cttttgaaaattttagctttcatgcaacgtctagggttagttgttttaggaagaggagat
ttaggtaatttaatgctttaccgtttgcttccaggaagaaaacggaaaaattggtatgag
ggagtgtacttacctctggataaacactatgcacagcgagatagacgcattcaaattatg
catcaagtgttagatgctggaacacaaaatgaaccacaactcattcagatattagaagat
tactttactctctctttagatgagttctctcaacgttacgaaaacaaacatcagaatcca
ccaattgtggaaaatattttagaaaatctcaatccaacccaacataaaattgttacaaat
gatcaaagtcgtgcattattggtacttgcaggaccaggctcagggaaaacccatacaatt
gttagccgtgtagcttatttagtatcagccagaggtgttccaccagaacgtattttagtt
ttagcttataatcgcacagctgctgctgaagtgcggaaacggctacatcaactcttaggt
aagcgtggaaccctggtagatgccttaacttttcatgcacttgcagctaaactaacaggg
cttagaagtcgtgatgttcccagagaaattacaggtgaggcgcgttttaggtggttatta
gagcaagctattatccatcttcaggaaaaccatcctggataccaatatattttggtggat
gagtatcaagatgtaaatgaattgcactaccaaataattacacgtttggctggttttgac
agtctggatgaagataaaagccaaaaaagttttttaatggctgtgggtgatgatgatcaa
aacttgtttgaatggaatggtgcaaaagttgaatttatccgtcgtttttgtcaagattac
gatgtaccaacagaagatataattcctttaatacaaaattaccgctctcgcccaaccatt
gttgagtttgctaatagttttatcgaaagggcgatcgctccagaaaagcgacttaaggga
gtcaacgaaaggatacaggctgttaacaatcagcagcccggaaaagtgtttttaggagag
tatggacatttgtatgacgtggctgaatggattactgaaaaaatagccgaaattttgact
caacctggtgaaattcagaaagaaaaaatagcagttttggcacatcgctgggaagacctg
cgttttttacagcacgttttgcgagatagttggggaaacgaccaagatattgcttaccag
ttatacaacacacaagataatttacgtcctatcgagagttgtgtcggtcaagcagtccta
gaccgattacgggaacaaccaaatctgcatatttctaacccccaagcccatcttgaaaaa
ttacgtcaagaattgggttatagtgatcgcgatgctgcttggtcatcattgttacacgct
ttgtctggctgtttgcagatgacacaagaagatatggcatatctcttagaagaagttcgt
cctgtacgacctgggcaagtcattctatctacctttcatagcgctaaaggctcagagttt
agtcacgtttttgtgttggaagatggttttgtagataccaacaacctagaaagtcgtgct
agggagttgtacgtaggattcacaagagccaaggagcaattatatatacttttcagcagc
aataaaggttcaacacacccaatattattggatgttttcaacaatatgaactctcctcaa
cctaatcaatatattcagaatgttcagatccctcaatttcatatacctcccagtattcgc
tatcaatggtttctagatccaagagacttatttctaagtcagcagatggttacaaaccag
tgtgggcaaagacgtataaaagcttatgctcatgaatgggggcatctttacttaatgcct
caaaataatatttcttgtaattatctagaaaatggcaatttaagtggtggggctgtagct
gttctctcaaatagaggaaaagagaggttacagcattttattcatcctaatcaacattta
gctgtaaggggtcatactatctttcgtgttgaacgagatgatcagttttttcaaaatgtg
caggaacagggacaggaggatcatcactatgttgttctcccttactttgaagttgaagaa
tttttattttaa
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integrated database retrieval system
