Nodularia sphaerocarpa: BDGGKGIB_02051
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Entry
BDGGKGIB_02051 CDS
T08134
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nsph
Nodularia sphaerocarpa
Pathway
nsph03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nsph00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BDGGKGIB_02051 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsph03021
]
BDGGKGIB_02051 (rpoB)
03400 DNA repair and recombination proteins [BR:
nsph03400
]
BDGGKGIB_02051 (rpoB)
Enzymes [BR:
nsph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BDGGKGIB_02051 (rpoB)
Transcription machinery [BR:
nsph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BDGGKGIB_02051 (rpoB)
DNA repair and recombination proteins [BR:
nsph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BDGGKGIB_02051 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ULP72409
LinkDB
All DBs
Position
2495827..2499129
Genome browser
AA seq
1100 aa
AA seq
DB search
MTTDTYNMESAFLLPDLIEIQRASFRWFLEEGLIEELNSFSPITDYTGKLELHFLGNNYK
LKEPKYSVEESKRRDSTYAVQMYVPTRLLNKETGDIKEQEVFIGDLPLMTDRGTFIINGA
ERVIVNQIVRSPGVYYKSEIDKNGRRTYSASLIPNRGAWLKFETDRNDLVWVRIDKTRKL
SAQVLLKALGLSDNEIFDALRHPEYFQKTIEKEGQFSEEEALMELYRKLRPGEPPTVLGG
QQLLDSRFFDPKRYDLGRVGRYKLNKKLRLSVPDTMRVLTPGDILAAVDYLINLEYDIGN
IDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDAEVLTPASLVNPKPLVAA
IKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPI
ETPEGPNAGLIGSLATHARVNLYGFLETPFRPVENGRVRFDLPPVYMTADEEDDLRTATG
DIPVDENGYIKGPQVPVRYRQDWATTTPEQVDYVAVSPVQIVSVATSMIPFLEHDDANRA
LMGSNMQRQAVPLLKPERPLVGTGLEAQGARDSGMVVVSRTDGDVTYVDATEIRVRPKGG
NSETRYRLSKYQRSNQDTCLNQKPLVRIGERVVAGQVLADGSATEGGELALGQNIVLAYM
PWEGYNYEDAILISERLVQDDVYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDALRQL
DEQGIIRIGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEK
GRVVDVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPVEDM
PYLADGSTVDIVLNPLGVPSRMNVGQVFECMLGWAAHTLGVRFKITPFDEMYGEETSRSI
VHGKLQEARDETGKDWVYNPDNPGKIMVFDGRTGEAFDRPITVGVAYILKLVHLVDDKIH
ARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEA
LNAIVKGKSIPRPGTPESFKVLMRELQSLGLDIAVHKVETQTDGSSLDVEVDLMADQSAR
RTPPRPTYESLSRDSLEEEE
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgactacagatacatataatatggaatccgcctttttgttgccagacttgattgaaatc
cagcgtgcaagttttcgctggtttctagaagaagggctgatagaagaactcaactcattt
agtccgattacagactacacaggcaaactagaactacactttttaggtaacaactacaaa
ctcaaagagccaaaatacagcgttgaggaatcgaaacggcgggatagtacctatgctgta
cagatgtatgttcccacccgcctgttgaacaaagaaacaggggatatcaaagaacaagaa
gtatttattggggatctgcctttaatgacagaccgaggcacgtttattattaacggagcc
gagcgggtaattgtcaaccagatagtgcgatcgcctggagtttactacaaatcagaaatc
gacaaaaacggacggcggacatattcagctagcttaatccctaaccggggggcgtggctg
aaatttgaaacagaccgtaacgatttagtgtgggtccgcatcgacaaaacccgtaaactc
tcagcacaggtactattaaaagccctcggcttgtcagataacgaaatatttgatgccctg
cgccaccctgaatatttccaaaaaaccatcgaaaaagaagggcaattttccgaagaagaa
gccctgatggagttgtaccggaaattaagacccggtgaaccacccacagtattaggtgga
caacagttattagactcccgattcttcgaccccaaacgttatgacctcggtcgcgttggt
cgttacaaactcaacaaaaaattacggctgtctgttcccgacaccatgcgcgtgctgact
cctggggacatattggcagcagtagattacctgattaacctagaatacgacatcggtaac
atcgacgatattgaccacttaggtaatcgtcgggtgagaagcgtcggagaactactgcaa
aaccaagtgcgagtaggcttaaaccgtctagagcggatcattcgcgaacgaatgaccgta
tcagatgccgaagttttaaccccagcctccttagtcaaccccaaaccattggtagcagca
atcaaagaattctttggttctagccaattaagtcagttcatggatcaaaccaatcccctc
gcagaactgacccacaaacgccgtctcagcgcccttggtcctggtggtttaacacgtgaa
cgtgccggatttgccgtgcgagatattcacccttctcactacggcagaatctgccccatt
gagacaccagaaggccccaacgccggtttgattggttccttagccacccatgcgcgagtt
aacctctacggattcttagaaaccccctttagaccagtagaaaatggtcgcgtgcggttt
gacttaccgcctgtctacatgacggcagacgaagaagacgatttgcggaccgccactggt
gacattcccgtagatgaaaatggctacattaaggggccacaagtgccagtgcgttatcgc
caagactgggcaaccacaacccccgaacaagtagactacgtagctgtatccccggtacaa
atcgtgtctgtagctaccagcatgattccctttttggaacatgacgacgctaaccgagcg
ctaatgggttccaatatgcaacggcaagcagtacccctgctgaagccggagcgtccctta
gtcggtactggtttagaagcccaaggcgcgagagactctggaatggtagtcgtttcccgt
accgatggcgatgtgacttatgtggatgcgacagaaattcgtgtccgtcccaaaggcggt
aactcagaaactagatatcgactttctaaataccaaagatccaaccaagacacttgttta
aatcaaaaacccctcgtccgcattggtgagcgagtagttgctggtcaagtgttagctgat
ggttcagccaccgaaggtggtgaattagccttgggtcaaaatattgtcctcgcctatatg
ccttgggaagggtataactacgaagacgcgattttgatttctgaaagactggtacaggat
gatgtctacacctcaattcacattgaaaaatatgaaattgaagccagacaaaccaaactc
ggaccagaagaaattaccagagaaattcccaatgtcggggaagatgccctgcgtcagtta
gatgaacagggaattatccgcattggtgcttgggtagaagctggagacattctggtagga
aaagtcacaccaaaaggtgaatctgaccaaccaccagaagaaaaactcttacgtgccatc
tttggtgaaaaagcgcgggatgtacgagataactccctgcgagttcccaacggtgaaaaa
ggacgcgtcgttgacgtgcgtttatttacccgtgaacaaggcgatgaattaccaccggga
gccaatatggtcgttcgggtgtatgtcgcccagaagcgcaaaatccaagtgggcgacaaa
atggcaggtcgccacggtaataaagggattatttctcgaatattgccagtagaagatatg
ccttatttagcagatggttccacagtggacatcgtgctaaaccccttgggtgtacctagt
cggatgaacgtcggacaggtatttgaatgtatgttgggttgggctgctcatactttggga
gtccgatttaaaattacgccctttgacgaaatgtatggggaagagacttcccgcagcatc
gtacatggcaaattgcaagaagcacgggatgaaacagggaaagactgggtatacaacccc
gataaccctgggaaaattatggtgtttgatggtcggactggggaagcttttgaccgaccg
ataactgtaggggtggcttatattctcaaactggtgcatttggtggacgacaagatccac
gctcgttccacaggtccatactcgctggtaactcagcaacccttgggtggtaaagcacaa
caaggtggtcagcgctttggggaaatggaagtgtgggctttagaagcctttggtgcagct
tacaccttgcaagaattgctgacagtcaaatcagacgatatgcaagggcggaatgaagcc
cttaatgccatcgttaaaggcaagtcaattccccgaccaggaacaccagagtcctttaag
gtgttaatgcgagaactgcaatcattaggattagacattgccgtacacaaggtagaaacc
caaaccgatggtagttccttagatgtggaagtcgatttaatggcagatcaatcagcccga
cgcacacctcctcgaccaacctacgaatctctctcccgtgactcgctagaagaggaagag
tag
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