Notechis scutatus (mainland tiger snake): 113424951
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Entry
113424951 CDS
T09026
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113424951 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nss03019
]
113424951 (SKIV2L)
Enzymes [BR:
nss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113424951 (SKIV2L)
Messenger RNA biogenesis [BR:
nss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113424951 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
113424951 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
CGGC
DUF3516
Motif
Other DBs
NCBI-GeneID:
113424951
NCBI-ProteinID:
XP_026542687
Ensembl:
ENSNSUG00000009635
UniProt:
A0A6J1VHG7
LinkDB
All DBs
Position
Unknown
AA seq
1272 aa
AA seq
DB search
MDLERIVLPPRGPLELPLSILEVGCAGRFELITEEEPTKEGFPLTTLPHGLPPYAEDLAS
ELEQHYLNSPEWLPIHDFERSHRFWPREKDAQSLFALEVTPVHSTLQAERNPTTGELLGF
KEALVDNRGLSAKNSLSFQRAPGPPSESLRGSATNYPFWPGGIDEPSLELIKAQEDKEED
IDFEKDLLTVPPGWKKGVEFTKQEIMASPGLLNLTNLLGALDTFELEASSDEEGKEKAEE
VEKRRKKGKNKGAREEEIPPAEPAPLHRVNSLEELVLKEVTPIPESAPQATPAPATAPPK
EQWAILVDVSSPVDDFYKRIPDPAFKWPFEPDVFQKQAILHLEKHDSVFVAAHTSAGKTV
VAEYAIALSQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLHPDASCLIMTT
EILRSMLYNGSDVLRDLEWVIFDEVHYINDSERGVVWEEVLIMLPDHVNIILLSATVPNT
LEFADWIGRIKRKKIYVISTLKRPVPLEHYLYTGNSQKTQNELFLLVDSRGTFLTKGYYD
AVDAKKDRTSKHSQTFGAKQPMHAGAGPGQDKNIWLSLIDMLRKKDHLPVVAFTFSRNRC
DENASMLTTVDLTTTTEKSEIHVFFQKCISRLKGTDRQLPQVLHMIDLLKRGIGVHHSGI
LPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFNSVRKHDGANFRDLVPAEYIQ
MAGRAGRRGLDTTGMVIILCKNQVPEMSDLHRMMLGKPTRLQSQFRLTYTMILNLLRVEA
LRVEDMMRRSFSEFHTRKDSKVYEHRIAQLSSMLANMEMPDTSRQLGDLQEYYSVVRELQ
EIRERIQRRVMESMNGLKALSVGRVIVVNNQEHKNALGVILQVSSDAANRVFSTLVMCEK
NSMERDLTEGQESNPPPSAEVPLPEDLLHTKLFLPEGPCGHTIKKLGPADILGITTKTLR
VNAERILEDFKKRQMPRFRNDPPGPSAATATQELLRLAEGSPEGLPLLDPVNDLQLKDLE
VVERMIQARSLEERLPEFQCVHSPLFHIEFVRFRERQRVLDELDQLRFLLSDQSLLLLPE
YHQRVEVLRSLGYINEGGAVELKGSVARQISNHELLLTQLLLDNALTDLRPEEIVALLSC
TVCQVRTQVEPQLPSVLQKGIEHIRLVAEQIALLQRKCGLQESVEDFVEQYKFGLVEVVY
EWARGMPFAEIARLTDVQEGIIVRCIQRLDETCREMRNAARVTGEPTLHAKMEAASNMIK
RDIVFAASLYTQ
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggatctggagaggatagtcctccctccccgaggacctttagagttgcctctttccatt
ttggaggttggatgtgccggtcgttttgagctcatcaccgaagaggaacccaccaaggag
ggatttccactgaccacactgccacatgggctgcccccgtatgctgaggatctggcctcg
gaattggagcagcattatctcaacagcccggaatggcttccaatccatgactttgagagg
tctcacaggttctggccccgagagaaggatgcccagtcactcttcgccctggaggtcacc
cctgtgcattccaccctccaggctgagcgcaatcccaccaccggggagctgctgggtttt
aaagaggcacttgtggacaacaggggattatcagccaagaattctctttccttccagcga
gctcctggccctccctccgaatctctgagaggcagtgccaccaactaccccttctggcca
ggtgggatagatgaacctagcttggaactgattaaggctcaagaagataaggaagaggac
attgattttgagaaagatttgctgaccgtgccacctggatggaagaaaggagtggaattc
accaaacaagagatcatggcttccccaggactgctgaatttgaccaatttgctgggtgcg
ttggatacctttgagctggaggcctccagtgacgaagaaggcaaagagaaggcagaggaa
gtggagaagaggaggaagaaagggaagaataagggagcaagggaagaagagatccctcca
gcagaaccagccccattgcacagagtgaacagcttggaggaactggtgcttaaggaggtg
acacccatccccgaatcagccccacaggccacacctgcccctgccacagcgccccctaaa
gaacagtgggctatcctggtcgatgtaagctcccccgtggacgatttctacaagcgaatt
cccgatccagccttcaagtggccttttgaacctgacgttttccagaaacaggcaattctc
cacttggagaagcatgattcagtttttgtcgccgcccacacctccgcgggaaagactgtc
gtggccgagtacgccattgctctgtctcagaaacacatgacacgcaccatctacacatcc
ccaatcaaagcactttccaaccagaagtttcgggatttcaagaacacctttggggatgtt
ggcttgttgacaggagatgttcagctgcatccagacgcctcctgcctcatcatgacaact
gagattctcaggtctatgctctataatggctccgatgtcctcagagacctagagtgggtg
atcttcgatgaagtgcattacattaatgattctgagcgtggtgtggtttgggaagaggtc
ctcatcatgttgccggaccacgtaaacataattttgctgagtgctaccgtccccaacacc
ctggagtttgctgactggattgggcgaatcaaacggaagaagatttatgtgatcagtaca
ctgaagcgccctgttccactggagcattatctgtacactggaaatagccagaagacgcag
aacgagcttttcctcctggtggattcccgcgggacgttccttacgaaggggtattatgac
gctgtagatgccaaaaaggaccgaactagcaaacactcccagacctttggggccaaacag
ccaatgcacgccggagccgggccgggccaggacaagaacatctggctctccctcattgac
atgctccgcaagaaggaccatctgccggtggtggccttcacgttctctcgcaatcgctgt
gacgaaaacgcctctatgctgaccaccgtcgacctgaccaccacgacggagaaaagcgag
atccatgtcttcttccagaagtgcatctcccgactgaagggaaccgatcggcagctgcct
caggttcttcacatgatcgaccttttaaaacgtggaattggagtgcaccacagtggcatc
ctgcccatcctcaaggaggtagtggagatgcttttcagcaaaggccttgtcaagatcctc
ttcgccacagagactttcgccatgggggtgaacatgccagcaaggactgtggttttcaat
tcagtccgtaaacacgacggtgctaatttccgggacttggtaccagccgaatacatccag
atggcaggccgggctgggcgtcgaggtctcgacaccactggaatggtgattattctgtgc
aaaaaccaagtgcctgaaatgtccgaccttcaccgcatgatgttgggcaaacctactcgg
ttgcagtcccaattccgcctgacatacaccatgatcctaaacctgttgagggtggaggca
ctccgagtggaagacatgatgaggagaagcttctccgagttccacacccggaaggacagc
aaggtctatgaacacagaattgcccagctgagcagtatgttagccaacatggaaatgcca
gacacatcaaggcagcttggtgacttacaagagtattattctgtagtccgagaactgcaa
gagatacgggaacgcattcagaggcgagtcatggaatcgatgaatggattgaaagccctt
tccgtggggcgagtgattgtggtgaacaaccaagagcacaagaatgccctgggagtcatc
ttgcaggtttcttcagacgcagccaatcgggtcttcagcactttagtgatgtgtgagaag
aactccatggagcgggacttgactgaaggccaggagtcgaatcctcctccatctgctgag
gtgcctctacccgaggatcttctccacacaaagctcttccttcctgaaggcccctgtgga
cacaccataaagaaactgggccccgcagatattctgggcatcacaacgaaaaccctccgt
gttaacgccgagcgtatcctggaggatttcaagaaacgacaaatgcccaggttcaggaac
gacccacctggaccatcagcggccacagcaacccaggagctgctgcgtttagcggagggc
tctccggaaggcctcccgctcctggatcccgtgaacgacctccagctgaaggatctggaa
gtcgtagagcgcatgatccaggctcgcagtctggaggaacgtttgccagagttccagtgt
gtgcacagccccctcttccacatagagtttgtacgcttccgagagcgccaacgcgtgttg
gacgaactagaccagctgcgcttcctgctgtcggaccagtcccttctcttactgcctgag
tatcaccagcgcgtcgaagtcctgcgttccctgggctacatcaacgaaggaggagccgtg
gagctcaaggggagcgtggcccgtcagatcagcaaccacgagctactcctgacgcagctg
ctcctggacaacgccctgaccgacctgcggcctgaggagatcgtggccttgctgagctgc
acagtgtgccaggtccgcacccaggtggagccccagctgccctctgtccttcagaagggc
atagagcacatccgcttggtagccgaacagatcgccctcctgcaacgcaagtgcggcctg
caagaatcggtcgaggattttgtggagcagtacaaattcgggctggtggaagtggtttac
gaatgggcccgtggcatgcccttcgccgagatcgcccgcctgaccgacgtgcaggaaggc
attatcgtccgctgcattcagcgcctggatgaaacctgccgcgagatgcgcaacgctgcc
cgggtgacgggggagccgacgctgcacgcgaagatggaagccgcctccaacatgatcaag
agggacattgtctttgccgctagcctctacacccagtga
DBGET
integrated database retrieval system
