Nitrosomonas stercoris: Nstercoris_01407
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Entry
Nstercoris_01407 CDS
T06172
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nst
Nitrosomonas stercoris
Pathway
nst03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nst00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Nstercoris_01407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nst03021
]
Nstercoris_01407
03400 DNA repair and recombination proteins [BR:
nst03400
]
Nstercoris_01407
Enzymes [BR:
nst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Nstercoris_01407
Transcription machinery [BR:
nst03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Nstercoris_01407
DNA repair and recombination proteins [BR:
nst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Nstercoris_01407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DUF4895
Motif
Other DBs
NCBI-ProteinID:
BBL35146
UniProt:
A0A4Y1YM11
LinkDB
All DBs
Position
1:1418085..1422164
Genome browser
AA seq
1359 aa
AA seq
DB search
MSYSFAEKKRIRKSFAKRTSILPFPFLLATQIQSYADFLQANVAPGKRKSQGLQAAFNAI
FPIESHSGNARLDFISYSLGVSTFDVKECQQRGLTYASPLRARVRLTIMDKEASKPTVKE
VKEQEVYMGEIPLMTETGSFIVNGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDHKDYVYFRIDRRRKMPVTILLKAMGYSDAQILANFFEFDHFTFEENK
VLFHLVPERLRGELASFDIKSKDGKILIQKDKRITAKHVRDLQQAKLTKIVVPEEFLLEK
ILAEDIVDKDTGEIIATINSEIDEVLLEKIMKIQGSGTKISTLFVNDLNYGPYISQTLRI
DESTDQLSAQVAIYRMMRPGEPPTEETVQTLFNGLFYAPERYDLSVVGRMKFNRRVGREE
LTGSLTLSNEDIIDVVKILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLARVEK
ALKDRLSQAESENLMPHDFINAKPVSSAVREFFGSSQLSQFMDQTNPLSEITHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEYGFIETPYRK
VKDGQVTEEVVYLSAIEEGQYVIAQANANFDQDGFFTDEVISCRHKNEFTLSPRDRVEYV
DIAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKPLVGTGIERVVALHSG
TAVKALRGGIVDYVDAGRIVVRVHDAEARAGEVGVDIYNLTKYTRSNQNTNINQRPIVKV
GDVLARDDVIADGASTDLGELALGQNMLVAFMPWNGFNFEDSILISERVVSGDRFTSIHI
EELSTVSRDTKLGTEEITADIPNLSERQRARLDESGIVYIGAEVEAGDVLVGKVTPKSET
QLTPEEKLLRAIFGEKASDVKDTSLHVPSGISGTVIDVQVYTREGVDRDKRSKQIIADEL
DRFKKDLADQMRIVEADAFQRAERLLLEKTAAGGPKKLAKNSTITQEYLEKVDKHHWFDI
RLVDEDASLQLEQIKDSLVQKRKLFDLAFEEKQKKLFQGDELPPGVQKMVKVYIAVKRRL
QPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPVDVVLNPLGVPSRMNIGQVLEVHLGWA
AKELGHKINEMMTARRNISEVRDFLNKIYSDTGKQEDLAALNDEEISELVRNLSDGVPFA
TPVFDGAHESEIKHMLKLADLPESGQTTLYDGRTGEAFDRPVTVGYMHILKLHHLVDDKM
HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTK
VYESIVKGDHKIDAGMPESFNVLVKEIRSLGLDIDLEQY
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgagttattcatttgccgagaaaaaacgtattcggaaaagttttgctaaacgaaccagc
attttaccgtttccgtttcttcttgccactcaaatacaatcttatgcagattttttgcag
gcgaatgtcgctcctggcaagcgaaaaagccaaggattacaagcagctttcaatgctatt
tttccaatagagagtcattccggtaatgctcgacttgattttataagctacagcttaggt
gtttcgacatttgatgttaaggagtgtcagcagagaggattgacctatgcttctcccttg
cgtgcgcgtgtcagattaaccattatggataaggaggcttcaaaacccactgttaaggaa
gttaaggagcaggaggtatatatgggggaaattcccctgatgacagaaacgggttccttt
attgtaaatggcacggagcgagtaatcgtttcacagttacatcgttctcctggtgtgttt
tttgaacatgatcgtggtaaaacacattcttcggggaaattgttattttctgctcgcatt
ataccttatcgtggatcttggttagattttgaatttgatcataaagattatgtttatttc
aggatagatcgtcgccgtaaaatgccagttacgattcttttgaaagcgatgggatattct
gacgcacaaattctagctaatttttttgaatttgatcattttacttttgaagagaataaa
gttttatttcatcttgttccggagcgtttgcgcggagagttggctagttttgatattaaa
tcaaaagatggcaagattcttattcagaaggataaaagaataacggcaaaacatgttcgt
gatttacaacaagctaaattgactaaaattgttgttcctgaagaatttttattggaaaaa
atcttggcagaagatattgtggataaagatacaggagaaattatcgccacaattaatagt
gaaatcgatgaggttttgcttgaaaaaattatgaaaattcaagggtcaggtaccaagatt
agtactctttttgtgaatgaccttaattatggaccatatatttcgcagacattaagaatt
gatgaaagtacagatcaattatctgcacaggttgccatctatagaatgatgcgaccggga
gaacctcctactgaagaaacagtgcagaccttgtttaatggtcttttttatgcgccagaa
cgttatgatttgtctgttgttggccgcatgaaattcaatcgccgggtagggcgtgaagaa
ttgactggttctttaaccttgtcaaacgaagatattatagatgttgtcaaaatactagtt
gaattaagaaacggtagaggcgagatagacgatattgatcatttgggtaatcgccgcgtt
cgttcagtaggggaattggcagaaaatcaatttagggcaggtttggcgcgtgttgagaaa
gcacttaaagatcgcttgagtcaagcagaatcagaaaatttgatgccacatgattttatt
aatgccaagccagtatcttctgctgtgcgtgagttttttggatcaagccagctgtcgcag
tttatggatcagacaaatccgttatctgaaatcacacacaaaagacgagtatcagccttg
ggccctggtggtttgacacgagagcgtgcaggatttgaagtgcgtgatgtgcaccccact
cactatggacgagtatgtccgattgaaacacctgaaggaccgaatattggtttaatcaat
tcgttggctctttatgccagaacaaatgagtatggtttcatagaaaccccctatcgcaaa
gttaaagatgggcaggtgacagaagaagttgtttatctttcagccattgaagaagggcag
tatgttattgcacaagcgaatgcaaattttgaccaggatggattttttactgacgaggta
atttcttgccgtcataaaaatgaatttacgctttctcctcgagaccgggttgaatatgtc
gatattgcaccagcgcaaattgtttctgttgctgcttcgttgattccatttctagaacat
gatgatgctaaccgcgcactgatgggttcgaatatgcagcgacaggccgtgccatgctta
cgtgctgaaaaacctttggtgggcacaggcattgaaagagtagtcgcactacattcagga
actgcagtgaaggctttgcgtggtggaatagtagattatgtagatgctggccggatagtg
gtgcgtgtgcacgatgcagaagcacgcgctggagaagttggggttgatatttacaatctc
actaaatatacacgttcaaatcaaaatacaaatataaaccaaagaccaattgtaaaagtt
ggcgatgtgcttgcgcgtgatgatgtaattgcggatggtgcttctactgacttaggtgag
ctggctctcgggcaaaatatgttggtagcctttatgccatggaatggatttaattttgag
gattctatccttatatctgagcgtgtggtatcaggggatcgatttacttcaattcatatt
gaggagttatctaccgttagtcgcgacactaaacttggtactgaagaaataactgcggat
attcctaatttatccgagcgtcaacgtgcgcgtcttgatgaatcaggcattgtttatatt
ggcgctgaagttgaggctggtgatgtgctggtcggtaaggtgacacctaaaagtgaaacg
caactaacaccggaagaaaaacttttgcgtgcaatatttggtgaaaaagcctcagatgta
aaagatacttctttacatgtcccttcaggtatttcaggaactgtaatagatgtacaagtt
tatacgcgtgaaggagttgatcgagataagcgctctaagcagataattgctgatgaactg
gatcgttttaagaaagatctagcagatcaaatgcgtattgtagaagctgatgcatttcag
cgtgcagagcgattacttttggaaaaaactgctgctggaggtcctaagaaactagcaaaa
aattcaacaattactcaggaatatctggaaaaggtagataagcatcactggtttgatatc
cgtctagttgatgaagatgctagtcttcagctagaacaaatcaaggatagtttagtacaa
aaaagaaagctatttgaccttgcgtttgaggaaaaacagaaaaaacttttccagggagat
gaattgccgcctggtgttcagaaaatggtgaaggtttatattgcggtcaaacggagattg
caacctggcgacaaaatggctggacgtcatgggaataaaggggtagtttctaaaattgtc
cccgtggaggatatgccttacatggcagatggcacacctgttgatgttgtgttgaatcct
ttgggtgtaccttcgcgtatgaatattggtcaggttcttgaggtgcacttgggatgggca
gcaaaggaacttggacacaaaatcaatgaaatgatgactgcacggcgcaacatttctgaa
gttcgggatttcttaaataaaatttatagtgacacgggtaaacaggaagatttagctgct
ttgaatgatgaagaaatatcagagttagttagaaatttatcggatggtgtaccttttgca
acccctgtgtttgacggtgctcatgagtctgaaatcaagcatatgctgaagttggctgat
ttacctgaatctggtcaaacaaccctttatgatggcagaacaggagaggcttttgatcga
cccgtaacggttggctatatgcacatcttaaaactgcatcatttggtagatgacaaaatg
catgcgcgctcaacagggccttacagtcttgttacacagcaaccattaggtggtaaagca
cagtttggagggcaaagatttggtgaaatggaggtctgggccttagaagcttatggcgca
gcttatacattacaggaaatgcttactgtcaaatctgatgatgttagtgggcgtaccaag
gtttatgaaagcattgtcaaaggagaccataaaattgatgcgggtatgccagaatcattc
aatgtgctggtgaaggaaatcagatctttgggcttggatattgatttagaacagtattaa
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integrated database retrieval system
