Neomonachus schauinslandi (Hawaiian monk seal): 110594257
Help
Entry
110594257 CDS
T08474
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110594257 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsu03019
]
110594257 (CNOT1)
Messenger RNA biogenesis [BR:
nsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110594257 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110594257 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
110594257
NCBI-ProteinID:
XP_021561447
UniProt:
A0A2Y9IBS3
LinkDB
All DBs
Position
16:complement(33401603..33504608)
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCSSIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgattcaggagtgtgcgtcg
ctgattacaaagccaaattttatctcgacgctgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttaaattcttccagctcagat
ctcagaggttttgctgcccagtttatcaaacagaagcttcctgatcttctgcgttcatac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacatctcctcctctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacaaatagacgcttttcttaagacgctgcgcagagattttccccaggaacgctgtccc
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcctg
cctgattccggaggggtagctaaaaccatgatggagagctccttggctgattttatgcag
gaagtaggctatggcttttgttcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggattgacagatggaattccattacagagtatctctgctcctggcagtgggatc
tggagtgatggaaaagataagagtgatggagcacaggcacacacatggaatgtagaagtc
ttgattgatgttctcaaggaactgaacccgagtttgaatttcaaggaagtaacttacgaa
ctggaccatcctggatttcaaattcgtgatagtaaaggacttcataatgtggtgtatggc
attcagaggggtctaggtatggaagtgttcccagtagacctcatatatagaccttggaaa
catgcagaaggccagctctccttcattcagcattcccttataaatccagagatcttctgt
tttgctgactatccctgtcatacggttgccactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgctgaggctt
gcagaggtgggacaatatgaacaagtcaaacagctcttcagcttccctattaagcactgt
ccagacatgctggtattggccttactacaaatcaacacctcttggcacaccttgcgccat
gagctcatctccactctgatgccaattttcctcggaaaccatcctaactctgctattatt
ttgcactatgcatggcatgggcagggacagtctccctcaatccgccaacttatcatgcat
gcaatggcagaatggtacatgcgaggggagcagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaattcgagagcatggagagccttttatccaggcatgtatgactttttta
aagagacggtgcccttcgattttgggtggacttgctccggagaaagatcagcccaaaagt
gctcaacttcctccagaaaccctggcgacaatgttggcctgtttacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatcctcaccatggtagccaattgcagtaatgtt
atgaacaaggccagacagccaccacctggagttatgccaaaaggacgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggttttcctccaaatttg
ggttctgcattcagtacccctcagtcaccagcaaaagcatttccacccctttcaacccca
aatcagacaactgcattcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggctcttggactccctgcagtgaat
aacgatccttttgtacagaggaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagaaatagatgatgaagcaaacagctattttcagagaatatataatcacccacca
catccaactatgtctgttgatgaggtattagaaatgttacagagatttaaagattctacc
ataaagagggaacgagaagtctttaactgtatgctgaggaacttgtttgaagagtatcgg
ttttttccccagtaccctgataaagagttacatataacagcctgcctgtttggtgggata
attgaaaaaggactggtcacttacatggcactaggtctggccctgcgatatgttcttgaa
gccttacgcaagccttttggttccaaaatgtattattttgggattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcctctatcagtcac
tttatgcaatttccacatcatttacaggagtatattgaatatggacaacaatctagagat
cctcctgtgaaaatgcagggttctatcacaacccctggaagtattgcactggctcaggcc
caggctcaggcccaggttccagcaaaagctccccttgctggtcaggttagcacgatggta
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaggccaacaggagtc
agctttaagaaagatgtgccaccttctattaatactacaaatatagacacgttgcttgtg
gccacagatcaaactgagagaattgtagagcccccagaaaatatccaagagaaaattgct
tttatcttcaacaatctctcacagtcgaatatgacccaaaaggttgaagaactaaaggaa
actgtgaaggaagaatttatgccttgggtttcacaatacctggttatgaagagagtcagt
attgagccaaactttcacagcctctattcaaacttccttgacacgctgaagaaccctgaa
tttaataagatggttctgaatgagacctacagaaacatcaaagtgctcctgacctctgat
aaagctgcagcaaatttttcagatcgttctttgctgaagaatttgggacattggctagga
atgatcacactagctaaaaataaacccatcttacacactgacttggatgtaaaatctttg
ctgctagaggcttatgttaaaggacagcaagagttgctctacgtagtgcccttcgttgcc
aaagtcttagaatctagcattcgtagtgtggtttttaggccacccaacccgtggacgatg
gcaattatgaatgtattagcagagctacatcaggaacatgacttaaagttgaacttgaag
tttgagattgaggtcctctgtaagaaccttgcattagacatcaatgagctaaaacctgga
aacctcctaaaggataaagatcgcctaaagaacttagatgagcaactctctgctccaaag
aaagatgtcaagcagccagaagaactccctcccatcacaaccacaacaacgtctaccaca
ccagctaccagtaccacttgtacagccacggttccaccacaaccacagtatagctaccac
gacatcaacgtctattcccttgcaggcctggcaccacacattaccctaaatccaacgatt
cccttgtttcaggcccatccacagttgaagcagtgtgtgcgccaggcgattgaacgggct
gtccaggagctggtccatcctgtggtggatcgatcaattaagattgccatgactacttgt
gagcaaatagtcaggaaggattttgccctggattctgaggaatctcgaatgcgaatagca
gctcatcacatgatgcgtaacttaacagctggaatggctatgattacctgcagggaacct
ttgctaatgagcatatctaccaacctgaaaaacagttttgcctcagcccttcgtactgca
tccccacaacaaagggaaatgatggatcaggcagctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcagtagaaaaagcaggccctgagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaagggcgcaggtac
tgtgatcctgttgtgttaacataccaagctgagcggatgccagagcaaatcaggctgaaa
gttggtggtgtggacccaaagcagctggctgtttacgaagagtttgcacgcaatgtgcct
ggcttcttgcccacaaatgatttaagtcagcccacaggatttttagctcaacccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgcattacagaattggag
cagcacctacatgctatcccaccaacgttggccatgaatcctcaagctcaggctcttaga
agtcttttggaggttgtagtattatctcgaaactctcgggatgccatagctgctcttgga
ttgctccagaaggctgtagagggtttactagatgccacgagtggtgctgatgctgacctg
ttgctacgctacagggagtgccaccttctggtcttaaaagctcttcaggatggccgggca
tatgggtctccatggtgtaacaaacagatcacgaggtgcctaattgaatgtcgggatgaa
tataaatacaatgtggaagcagtggagttgctcattcgcaatcatttggttaatatgcag
cagtatgatcttcacctagctcagtcaatggagaatggtttaaactacatggctgtggca
tttgctatgcaattggtaaaaatcctgttggtggatgaaaggagtgttgctcatgttact
gaggcagatctattccacaccattgaaactctcatgaggattaatgctcactccagaggc
aatgctccagaaggattgccccagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctggaatatctcaagcctca
gagtacgatgatcctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaagactgatgac
ctcataacgaggttctttcgtctgtgtactgaaatgtgtgttgagatcagttaccgtgct
caggcagagcagcagcacaatcctgctgctaatcccaccatgatccgagccaagtgctat
cacaacctggatgcctttgtccgactcattgcactgctagtaaagcactcaggggaggcc
accaacactgtcacaaagattaatctgctgaacaaggtccttggtatagtagtgggagtt
ctcctccaagatcatgatgttcggcaaagtgaatttcagcagcttccctaccatcggata
tttatcatgctgctcttggaactcaatgcacctgagcatgtattggaaaccattaatttc
cagacacttacagctttctgcaatacattccacatcttgaggcctaccaaagctcctggc
tttgtgtatgcctggcttgaactgatctctcatcggatatttattgcaagaatgctggca
catacgccacagcagaagggatggcctatgtatgcacagctactgattgatttattcaaa
tatctagcgcctttccttagaaatgtggaactcaccaaacctatgcaaatcctctataag
ggcactttgagagtgctgctggttcttttgcatgatttccctgagttcctttgtgattac
cattacggattctgtgatgtgatcccacctaattgtattcagctaagaaatctcatcctg
agtgccttcccaagaaatatgaggctcccagacccattcactcctaatctgaaggtggat
atgttgagtgaaattaacattgcaccccggattcttaccaattttactggagtgatgcca
cctcagttcaaaaaggatttggattcctatcttaaaactcgatcaccggtcacttttctg
tctgatttgcgaagcaacctacaggtatccaatgagcctggcaatcgttacaacctccag
ctcatcaatgcactggtgctctatgtagggactcaggccattgcacacatccacaacaag
ggtagcacgccatcaatgagcacgatcacccactcggctcacatggacatcttccagaac
ctggctgtggacttggacactgaaggtcggtatctcttcctgaatgccattgcaaatcag
ctgcggtacccaaatagccacactcactacttcagctgtaccatgctctacctttttgca
gaagccaacactgaagctatccaagaacagattacaagggttctcttggaacggttgatt
gtaaataggccacatccttggggtcttcttattaccttcattgaactgattaaaaatcca
gcgtttaagttctggaaccacgagtttgtacactgtgccccagaaattgaaaagttattc
cagtcggttgcacagtgctgcatgggacagaagcaggctcagcaagtaatggaagggaca
ggtgccagttag
DBGET
integrated database retrieval system
