Nicotiana sylvestris (wood tobacco): 104213544
Help
Entry
104213544 CDS
T05026
Name
(RefSeq) probable pectate lyase 13 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy00040
Pentose and glucuronate interconversions
nsy01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
104213544
Enzymes [BR:
nsy01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
104213544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
WSS_VP
Motif
Other DBs
NCBI-GeneID:
104213544
NCBI-ProteinID:
XP_009761365
UniProt:
A0A1U7VHN4
LinkDB
All DBs
Position
5:166751784..166757891
Genome browser
AA seq
491 aa
AA seq
DB search
MLSAICILLFCFLISFFPLITNSLNLTLPYQHPYPEAVVQELQSRVNESISRRQLLDTTI
NAQCQTGNPIDDCWRCDPNWASNRQRLADCAIGFGQGAIGGRNGKIYVVTDSSDRDTVNP
TPGTLRHAVIQDEPLWIIFSADMFIKLKHELIVNSYKTIDGRGAKVHITGNGCITLQYIS
NVIIHNVHIYNCRPSGNTNIRSTPTHVGHRGRSDGDGISIFGSRNIWIDHCALSHCTDGL
IDAIMGSTAITISNNYFTHHDEVMLLGHDDRYLPDSGMQVTIAFNHFGVGLVQRMPRCRR
GYIHVVNNDFTEWQMYAIGGSANPTINSQGNRYMAPVDPNAKEVTKRVDTDEGEWSDWNW
RTDGDVMVNGAFFVPSGEGLSNQYAKASSVEPKSAVLIDQLTLNAGVFGGPRDNSISISY
GGGTTTGASGSGGAGSTGGGDSDFYGMIFGSGAKLSPSTTTTILLSHLIILVLYITTNHC
GQLSLQLLHLL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgctttctgctatttgcattctcttattctgtttcttaatctcattcttcccactaatt
acaaattcccttaatctcaccctcccctatcaacacccttaccctgaagctgtggttcaa
gaactacaaagtagggtgaatgagtccatatcaagaagacaactgttagacactaccata
aatgcacaatgtcaaacagggaacccaatagacgattgctggcgctgcgatccaaactgg
gccagcaatcgtcaacgtttagcagattgcgccataggcttcggccagggcgcaatcgga
ggaagaaacggtaagatttacgtcgtcactgattcttcagatagagacaccgtaaatcca
acgccggggactctccggcatgccgtaatccaagacgaaccgctctggataattttctca
gccgacatgtttattaaattaaaacatgaactcatcgtaaatagttataaaacaatcgac
ggtcgtggtgcaaaagtacacattacaggaaatggatgtataacgttacaatatattagt
aatgttattatacacaatgtgcatatttacaattgtcgtccttcgggaaatactaatata
cgttcgaccccgactcacgttggacatagaggaagatcggacggtgatggaatttctata
tttggatcgcgaaatatatggattgatcattgtgcattgtcgcattgtaccgacggctta
attgatgctatcatggggtccactgcgattactatatctaacaactatttcactcaccat
gatgaagttatgctcttgggacatgatgatagatatttgcctgactccggaatgcaggtg
acaatagcattcaatcattttggagtgggattagtacagagaatgccaaggtgtagaaga
ggatatatacatgtagtgaacaatgattttacagagtggcaaatgtatgcaattggagga
agtgctaatcctactattaatagtcagggcaatcgttatatggcgccagtggatccaaat
gcaaaggaggtgacaaagcgcgtggacacagacgagggagagtggagtgactggaactgg
agaactgatggggacgtaatggtaaatggagcatttttcgtgccatcaggtgaagggctg
agcaaccaatacgcgaaggcctcgagcgtggagcccaaatccgccgttcttattgatcaa
ctcaccctcaacgccggtgtttttggtggcccgagggataatagtattagcatatcatat
ggaggtgggaccaccaccggagctagcgggagcggcggtgccgggtccactggcggcggc
gatagtgacttctatggaatgatatttgggagcggcgcaaaattatcaccatctacaacc
actactattttattgtctcatttaattattttagttttgtacattaccaccaaccattgt
gggcaattatcattacaattattacacttactatag
DBGET
integrated database retrieval system
