Nicotiana sylvestris (wood tobacco): 104235937
Help
Entry
104235937 CDS
T05026
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104235937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104235937
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
104235937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_8
TPR_16
TPR_14
TPR_17
TPR_12
TPR_7
TPR_9
TPR_6
ARM_TT21_C
TPR_19
TPR_NPHP3
Y2_Tnp
TPR_10
Motif
Other DBs
NCBI-GeneID:
104235937
NCBI-ProteinID:
XP_009788078
UniProt:
A0A1U7XB39
LinkDB
All DBs
Position
4:181725553..181755804
Genome browser
AA seq
1172 aa
AA seq
DB search
MSEEDDAIRRLEEAVVDDPSLHFDLGVLLWDKGGDIQEKAAQHFLIAAKLNPQNGAAFRY
LGHYYARVAVDSQRAVKCYQRAVNLNPDDSIAGEAICDILDGSGKESLEIAVCREASEKS
PRAFWALCRLGFLLVNQKKWSEAVQSLQQAIRGYPTCADLWEALGLSYQQMGMFTAAVKS
YARAIELEESRVFALVESGNVHLMLGSFRKGIEQFRQALLISPLNLSAHHGLASALLSLA
KESIDSGAFKWGASLLEEASKVALECTSIVGNMSCSWKLHGDIQLIYAKCFPWMDEGLGS
GADEKSFSSSILSWKRNCCLAARSACRSYQRALHLSPWQANVYTDVAIASELLLSLKENC
KDDINSWFVSEKMCLGGLLLEGCNSEFWVALGCLSDHSALKQHAFVRALQLDVSLAVAWA
HLGKLYRLEGKSQLAQLAFDRARSIDPSLSLPWAGMSADAAARNLKPDEAYECCLRAVQI
FPLAEFQTGLVKLALQSGYLQSPEAFGAIQQALQRAPQYPESHNLKGLVCEARGDYESAV
ASYRLARLAARVFAGRVSKSYPADISINLTRSLCMAGNADAAIQECKYLENKGLLDVEGL
QLYALSYWKLGKYDLALSVAKRLASSALPTEHSLAAASISFICRLVYHMLGQELAIRNIL
QLPRRAFESSQVRLVASAIHALDESHQLDSVVSSVRESLSSSKEIAALDFLATLGLLVKH
GSNDCLGVQKGVNYLRRALHVSPNSNLIRNLLGYLLLSSEEWKDVHISARCFIVDPSEHL
KQEGVKSSVEIFGAGAVACCTMGSSKKTLPMFICRESLTSGCKTIQLLQKCVHQQPWDHT
SYYLLILNYLQKAREEKFPHNMCVVLERLISVALQNELYAKEDISYQYQKFQLLLCAAEV
SLQCGNNFNCIMRAKSALEMQLSDNYLFFAHLLLCRAYAVEGNYIGLHEEYVRCLELKTD
YHIGWICLKFLESQYKLHSDSSALALAFQECCKEIKTSWNMWIAIYNLVQGLTAVWNGEF
IDAEESLAQACSLAGGESCLFLSHGAICMEIARQQSDSEFLSLAIRSLKKAKDSSSMPLP
FVSLLLAQAEASLGSESKWEKNLIEEWSSWPPESRPAELFFQMHLLARRLTEGSGAISNL
EPSTSPIRWILEAIHMNPSCLRYWRALLKFME
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagaagacgatgctataagacggttagaagaagcagttgtggacgatccttcg
ctccactttgatctcggggtcttgttatgggataagggaggagacattcaggaaaaagcc
gctcaacattttctcatagcggcgaagctcaacccacaaaatggtgctgctttcagatat
ttgggacactactatgctcgagtggctgtcgactctcagagggctgtcaagtgttatcag
agagccgtcaaccttaatcccgatgattcaattgctggggaagcaatatgtgatatactg
gacggaagtggaaaagagagcttggagatagctgtatgccgcgaagcttcagagaagtca
cccagggccttttgggctttatgcagattgggtttccttttggtcaaccaaaagaagtgg
tccgaagcagtgcagagtcttcagcaagccattagaggctatccaacatgtgctgatttg
tgggaggctctgggtctttcctaccagcaaatgggcatgtttacagccgctgttaagtcc
tatgcaagagctattgaattggaggaatcaagagtatttgcattggtggaaagtggaaat
gtccatttgatgcttggttcgtttcggaagggaatagagcagttccggcaagctttactg
atctcacctctgaatttgtccgcgcatcatgggcttgcctctgcactccttagtttggca
aaggaatctattgattctggtgcctttaaatggggagcttcactcttagaggaagcgtcg
aaagtggctctagaatgtacttccattgttggcaatatgtcttgttcttggaagctgcat
ggagatattcagctcatatacgcgaaatgttttccatggatggatgaaggattgggatca
ggagctgatgaaaaatcattcagtagttcaatcctgtcatggaagagaaactgctgctta
gcagccagatctgcttgtcgctcctaccagcgggctttgcatttgtccccttggcaagct
aatgtgtatactgatgttgccattgcatctgagcttcttttgtcgttgaaggagaactgt
aaagatgacattaactcttggtttgtgtctgaaaagatgtgccttggaggcttattactt
gaaggttgcaatagcgagttttgggtagccttaggatgtttatctgatcattctgcattg
aaacaacatgctttcgtacgggcgctgcagttggacgtttctcttgcagttgcatgggca
catcttggaaagctttatcggctggaggggaaaagtcaattggctcagctagcatttgat
cgtgcaagaagtattgatccttcactttcattgccatgggcaggcatgtcagctgatgct
gctgcaaggaatctgaaaccagacgaggcttacgagtgctgtcttcgggcggttcagatc
tttccacttgcagaattccaaactggtctagttaagcttgctctgcagtctggttatctg
caatctccagaggcatttggagccatccagcaggctttgcagcgtgcacctcagtatcct
gaatctcacaatctgaaagggctagtttgtgaggcacgaggtgattatgaaagtgctgtt
gcctcgtatagactggcacgccttgctgccagagtttttgcaggaagagtttcaaaatcg
tatccagcagatatatctattaatttgaccaggtcgctctgtatggcaggaaatgctgat
gcagctatccaagaatgtaaatatttggaaaacaaaggtcttctggatgtagaaggtttg
cagctttatgcgctttcttattggaaacttggcaagtatgaccttgctctttcagtggca
aaaaggctcgcctcatctgctttaccaacagaacattcattggctgctgcctccatcagt
ttcatctgtagattagtgtatcatatgttagggcaggaattagctattagaaacattttg
caactacccagaagagccttcgagagttcacaagttaggcttgtagcatctgctattcat
gcattagatgaaagtcatcagcttgactcagttgtttcaagtgttcgtgagtctctttca
tctagcaaagagattgctgcactggatttcctagccacacttggcttactagtcaaacat
ggatctaacgactgcttaggagttcagaagggagtcaattatctaagaagagctcttcat
gtttctccaaacagtaatttgataaggaaccttcttggttatctattattatccagcgaa
gaatggaaagatgttcacatttcagctcgatgcttcatagtggatccttccgaacatctg
aagcaggaaggtgttaaatccagtgttgagatttttggtgctggagcagttgcttgctgt
actatggggagcagcaagaagacattacccatgttcatctgtagagaaagtttgacatcg
gggtgcaaaactatccagctgctgcagaagtgtgtccatcagcagccttgggaccatact
tcctattacctgcttatactaaactatctgcaaaaggcgcgggaggagaaatttccgcat
aacatgtgtgttgttcttgagcggttaataagtgtggctcttcaaaatgagctttatgcg
aaggaagacatttcgtaccaataccaaaagttccagcttctgctttgtgctgcggaggtt
agtttgcaatgtgggaataatttcaattgcattatgcgtgcaaaaagtgctctagagatg
cagctttcagataactacctcttctttgcacacttgctactgtgtcgtgcctatgctgtg
gaaggtaattatattgggcttcatgaagagtacgttaggtgcttggagctcaaaactgat
tatcatattggttggatttgccttaagtttcttgaaagtcaatacaagctgcactcagat
tccagtgcactagccttggcctttcaagagtgttgcaaagagataaagacttcgtggaac
atgtggattgctatatataatttggttcaaggtctaactgcagtttggaatggggaattt
attgacgcagaagagtcacttgcgcaagcttgctcgttagctggtggtgagagttgcctt
tttctcagccatggtgctatttgcatggagattgccagacaacagtccgattcagagttt
ctatcacttgctattagaagtctgaaaaaagcaaaagatagttcttcgatgccattaccc
tttgtctcactcctactggcgcaagcagaagctagcctcggctctgaatcaaagtgggaa
aaaaacctcattgaggaatggtcatcttggccaccagagagtaggcctgccgaactattt
ttccagatgcatttgcttgctagacggctgacagaaggttctggagctatatccaatctg
gagccatctacaagtcctataagatggatacttgaagcaatccatatgaatccgtcttgt
ttgagatactggagagctttgttgaaatttatggagtaa
DBGET
integrated database retrieval system
