Nicotiana sylvestris (wood tobacco): 104238607
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Entry
104238607 CDS
T05026
Name
(RefSeq) protein CLP1 homolog isoform X2
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104238607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104238607
Enzymes [BR:
nsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
104238607
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104238607
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
FtsK_SpoIIIE
AAA_24
ABC_tran
DUF1611
ATP_bind_1
MMR_HSR1
AAA_29
Motif
Other DBs
NCBI-GeneID:
104238607
NCBI-ProteinID:
XP_009791308
UniProt:
A0A1U7XNW5
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All DBs
Position
9:3589302..3606061
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AA seq
439 aa
AA seq
DB search
MAYGGTNVNPLAATGGSTTVRQVKLDKECELRIETSLDLPLRLRLLTGTAEIFGTEIPPE
IWLTIPPRLKFAVFTWYGATIEMDGPTETDYTADETPMISYINVHAVLDGRRNRAKASPS
DSDTSQGPRVVVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCVAATP
IELPIDPVEGIPLEMPMVYFFGHVTPSANIDHYKVLVKELAQTLEKQFSGNAESRASGMV
INTMGWIEGVGYELLLHAIDTFSATVILVLGQEKLCSMLKDVLKNRPNVDVVKLQKSGGV
VSRNAKVRQKARGYRIREYFYGPSNDLSPHSNVVNFGDLFIYRIGGGPQAPRSALPIGAE
PAADPTRLVSVSINRDLLHLVLAVSYANEPDQIISSNVAGFIYVTDVDMHRKKITYLAPC
AGELPSKYLIVGTLTWIEN
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcttatggaggcacaaatgtcaatccattggcagcaacaggtggttcaacaactgtg
aggcaggtgaagctggataaagaatgtgagctccgaattgaaaccagcctcgacttgccc
ctccgtcttcggctcttgactggaacagctgagatttttggaactgaaatccctcctgaa
atctggcttaccatccctccaagactcaaatttgctgtttttacttggtatggagccaca
atcgagatggatggtcccactgaaactgattatacagcagatgagacaccgatgataagt
tatataaatgttcatgctgtacttgatggacgaagaaatcgtgccaaagcttcgcctagt
gattctgacacttctcagggcccaagggtcgtcgtcgtgggacctacagattctggcaag
agtactttatcaaggatgcttcttagttgggcagcaaaacagggatggaaacctactttt
gtggatttggacataggtcaaggatcgataactattccaggatgtgttgctgctacacca
atcgagttgcctattgatcctgttgaaggaattccacttgaaatgcctatggtctacttc
tttggtcatgtgactcctagtgccaacatagatcactacaaggtactcgtcaaggagcta
gctcagactctggagaagcaattttctggcaatgctgaatctcgagcttcaggcatggta
ataaatacaatgggatggatagagggagttggttatgagttgctactccatgcgattgat
acattcagtgccacagttattcttgtcttgggtcaggaaaaactttgtagcatgctaaaa
gatgtattgaagaatcggcctaatgtggatgtagtgaaacttcaaaagtccggtggagtt
gtatcaaggaatgcaaaagtacggcagaaagcaaggggctacagaatacgggagtacttt
tatggcccttcaaatgacctctcaccacattctaatgtagtgaacttcggtgacttgttc
atctaccgaattgggggtggaccacaggctccacgctcagctttacctattggtgcagag
cctgctgcagatcctacaagattggtttctgttagtatcaaccgggacttgctccatttg
gttcttgccgtctcgtatgccaatgaaccagatcaaataatttccagtaatgttgccgga
ttcatctatgtcacagacgttgacatgcataggaaaaagataacatatcttgcaccatgt
gctggggaacttccgagcaaatacctaatcgtgggaaccttaacatggattgaaaactga
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