Nicotiana tabacum (common tobacco): 107802598
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Entry
107802598 CDS
T04643
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107802598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107802598
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107802598
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107802598
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
107802598
NCBI-ProteinID:
XP_016481615
UniProt:
A0A1S4AY63
LinkDB
All DBs
Position
Un
AA seq
2418 aa
AA seq
DB search
MIPFTSTASSQIRFLLNSLNASNSDTVFHELRQYLAYGVEGSILLLQTCVDHLNVYGKDL
KNTQLDPVFASIFRCILDKPSFSTAFSESLKDTAISEEFLVNLSNALQLTISEKIGVGLA
LSDSENVDVRNCGTNYCMGQIAELCSTNSSVDDVMPIQSVLLYLDQSEGLSKHVDLFMHM
LSLIQSKEEVQFILTPLLSDELREANFLRNLDFLNDGGEDDFDALVAEMEKEMSIADIMK
ELGYGCTVNVLQCKEMLSLFLPLTEVTVARILGMIVRTHSGIEDNQNVFSTFRAALGSST
VSDPSPLNSWNADVLIDAIKQLAPGLNWVTVMENLDHEGFYVPDGTAFSFLMSIYKHACQ
DPFPLGAVCGSIWKNAEGQLSLLKYAVSVPPEVFTFAHCGRQLTYVDAVNDHKIQIGHAN
HAWLCLDLLEVLCQLAERGYASSVRSILEHPLKHCPEVLLLGMAHINTLYNLLQHEVSAA
VFPVMLKNTAASGMILHLWHVNPSILLRGLVDALNVDLENTYKVLDTCQEQKILSSVLDM
IPYAFGIRLAALASRKELMDLEKWLSNNLSTFKDIFYEECLKFLREVHLAAQDVASNRFD
PPNALWTIYSETSSTFLKVLKSHSGLVSSRHLSEELDKLHITYMDANSRLKSVGGADSST
SDGSDDIEAEANIYFHQMFSGQLTNDATVQMLARFKESTEKREQAIFECMIANLFEEYKF
FSKYPERQLKIAAVLFGSLIKNQLVTHLALGIALRAVLDALRKPADSKMFVFGIMALEQF
VDRLIEWPQYCNHILQISHLRATHSELVAFIERALARISLAHSESEVGHSPAADQFHGPI
TSSPMNAEGSAFPVVGQGSLQQSMQGSSSNQLPQRQQSSLDERKPSAVLSSYLKPALSSA
VQPAAVPSSDTAGIQKPQGSVGASAVLTSSPGFLRPSRAITSARFGSALNIETLVAAAER
RETPIEAPPSEIQDKISFIINNLSAANIEAKAKEFTGILEEQYYPWFAQYMVMKRASIEP
NFHDLYLKFLDKVTSKALYKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKIT
IGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGL
LAEIYAMPNLKMNLKFDIEVLFKNLGVDLKEVVPTSLLKDRVREVEGNPDFSNKDVGSSQ
PPIVGDVKSGIISSLNQVELPLEVPSPSHPSGPSRILTQYAAPLHIPSAPMTEDEKLAAL
GLSDQLPSAQGLLQGQSPFSVGQLPAPASNIEQQFVVNPKLHALGLQLHFQSVLPIAMDR
AIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRICNAAHLMVASLSGSLAHVTCKE
PLRGSISGQLRTLLQGLGIASELLEQAVQLVTNDNLDLGCAMIEQAATDKAVQTIDGEIA
QQLAIRRKHRDGVGPTFFDASLYTQGHMGGLPEALRPKPGRLSHSQQRVYEDFVRLPLQN
QSSQSPSAVPAGPSTSSGSGGVSRAYMAGTGQMNPNLYSSGLVNAGVSAVPQPLEISDEI
DTSSQLNSASSPHLGMGDSAASNNFETEAIAEPFTSVSAPELHPLEPSNIAKEPGASLQP
SNATAASERVGNSISEPLLTTGDALDKYQIISEKLESLVSEEAKEAEIQALIAEVPVIIL
KCISRDEAALAVAQKAFKGLYENASNSAHIGAHLAILASIRDVSKLFVKELTSWVIYSDE
ERKFNKDITVGLIRSELLNLAEYNVHMAKLLDAGRNKSATEFAISLIQTLVISDSRVISE
LQNLVEALAKIAARPGSPESLQQLVEIAKNPAAANAAALSSVTFGKEDSNKQSRDKKIAG
PATGTREDYGVSESVEPDPAGFREQVSMLFAEWYRICEIPGANDATHAHYILQLHQSGLL
KGDETSDRFFRRLTELSVSHCLSSEVISSTPQSHQAQPLSFLAIDIYAKLVFSILKFYPV
DQGSSKLLLLPKVLAVTVKFIQKDSEEKKMTFNARPYFRLFINWLLDLCSLDPVFDGANF
QVLTALANAFHALQPLKVPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQF
MEPFLRNAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILS
AFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQIKGDVDEYLKTRQQGSPF
VSELKQKLLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTPHAQSMPSSVPFAV
FLVGAALDIFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQ
EQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRPFTRCAPEIEKLFESVSRSCG
GPKPVDESVVSGGIPDIH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgattcctttcacctccactgcttcttcacagattcggtttctgctcaatagcctgaac
gcttccaactctgacactgttttccatgagctccgtcagtatctggcatatggagttgaa
gggagcatattgctgcttcagacgtgcgttgatcatctgaatgtttatggaaaagatttg
aagaacacacagctggatcctgtatttgcttccattttcagatgcatcttggacaagcca
agtttcagcactgcattttctgaatccctaaaggatactgcaattagtgaggagtttttg
gtgaatctctctaatgctttacagttgacaatatctgaaaaaattggagttggccttgca
ttgtcagactcggaaaatgttgatgtcaggaattgtggaaccaactattgcatgggtcag
attgcagaattatgttccaccaattcttctgtagatgatgtcatgccaattcagagtgtt
cttttgtatctggatcaatctgaaggcctctctaagcatgtagacttgtttatgcatatg
ctatcgctcatccagtcaaaagaagaagtccagttcattttaactcctttgctttctgat
gaacttcgtgaagctaattttttgaggaacttagatttcttaaatgatggtggtgaagat
gattttgatgctcttgtggcagaaatggagaaggaaatgagcatagcggacataatgaag
gaattgggttatggatgcactgttaatgtcttgcaatgcaaagaaatgttatctttattt
ttgccgttgactgaagtgaccgttgctaggatacttggtatgattgtacgtacccactca
ggcatcgaggataaccagaatgtgttctcaacgttccgtgctgctcttggtagcagcact
gtatctgatccatctccattgaattcttggaatgctgacgtccttattgatgcaataaag
caacttgctcctggacttaactgggtaactgtaatggaaaacctagatcatgagggtttc
tatgttcccgatggaacagccttttcctttttgatgtccatttacaaacatgcctgtcag
gatccttttcctcttggagctgtttgcggttctatctggaagaatgctgagggtcagctt
tccttactcaagtatgctgtctcggtgcctcctgaagtatttaccttcgcgcattgtggg
aggcaactgacttatgttgatgcggtgaatgaccataagatccaaattggacatgcaaat
catgcgtggttgtgtcttgaccttctcgaagttctttgccagctggctgagagaggttat
gcaagctctgttcgatccattctggagcaccctttgaagcactgtccagaagtcttgctt
cttgggatggcccatatcaatactctgtataatctcctccagcatgaagtttccgccgct
gttttccctgttatgctaaaaaatactgctgctagtggtatgattcttcatttgtggcat
gttaatcctagcatcttgttgcgaggtcttgttgatgcattgaatgttgacctggagaac
acctacaaagtcttggatacatgtcaagagcaaaagattctatcatcagtactggatatg
attccttatgctttcggcatcagacttgctgcccttgcttcccgcaaagaactcatggat
ttggagaaatggttgagcaataacttaagcacatttaaagatatcttctatgaggaatgc
cttaagttcttgagggaggtacatctcgctgctcaagatgttgcttccaaccgctttgat
cctcccaatgccctttggactatttattcagaaacttcttcaacctttttaaaggtactt
aagtctcattctggcctagtttcttcacgccacttatcggaggagctggacaagttgcac
ataacatacatggatgctaattcaaggcttaagagtgttggtggtgctgattcatccact
tctgatggttctgatgatattgaagcggaagcaaacatatacttccatcaaatgttctct
ggtcagctgactaatgatgcaacagttcaaatgcttgctcgtttcaaagaatcgactgaa
aagagggagcaagcaattttcgagtgcatgattgctaatctgtttgaagaatacaaattt
ttctccaagtacccagaaaggcagctcaaaatagctgctgttctatttgggtcacttatt
aagaatcagctggtaactcatcttgcacttggtattgccttgcgagctgtcttggatgcg
ttgcgcaagcctgctgattcaaagatgtttgtttttgggattatggcacttgaacagttt
gttgaccgtctgattgaatggccacaatactgcaaccatatcttgcaaatttctcatctg
cgggcaactcattcggagcttgttgcgttcattgaacgggcgcttgctaggatatcactg
gcacattctgaatcagaggtaggccacagtcccgctgctgatcaattccatggtcctatc
acatcttccccaatgaatgctgagggttcagcatttccggtggttggacagggtagcttg
cagcaaagtatgcagggatcctcttcaaaccagcttcctcagaggcagcaaagttcctta
gatgagaggaaaccctctgctgttctctccagctacttgaagccggctttatcatctgca
gtgcaacctgccgctgttccttcaagtgatacggctggcattcagaagccacagggttca
gtcggtgcttcagcagtactcacttcttctcctggctttcttcgtccatctcgggccatt
acctcagcaagatttggttctgcgttgaatattgaaacgcttgttgctgctgcagagaga
agagaaacacccatagaggctcctccatcagaaattcaggataagatatcatttataatt
aataacttatctgcggcaaatattgaagctaaagcgaaagagtttactggaattttggaa
gagcagtactacccgtggtttgctcagtatatggtgatgaaaagagcaagcattgagcca
aattttcatgacttgtacctgaagttcctagataaagtaacttcaaaagctttgtacaag
gagattgtgcaagcaacctacgagaattgcaaggttcttttagggtcagaattgataaaa
tcgagttcagaagagcgttcgttgctgaaaaaccttggaagctggctagggaaaattaca
attggaaggaatcaagtcttgagggcgcgggagatcgatccaaagtctttgattatagag
gcgtatgaaaaaggtttgatgattgcagttattccttttacttcgaaggttctggaacca
tgccaaagcagtctagcataccaaccgcctaacccttggaccatgggtattcttgggtta
cttgctgagatttacgcaatgccaaatcttaaaatgaatctcaaatttgacattgaggtc
ctgttcaaaaatcttggtgtggatctaaaagaggtagttccaacttctcttctcaaggac
agggtgagagaagtggaaggaaatcctgacttctcaaacaaggatgttggatcttcccaa
ccacctatcgtgggtgatgtcaaatctggcattatatcttcactaaaccaggttgaacta
ccacttgaggttcccagtccttctcatcctagtggcccttcgcgtattttaactcagtat
gctgctcctcttcatattccatctgctccaatgacggaggatgagaagctagcagcgctt
gggctgtctgatcaacttccttctgctcaaggtcttttacaagggcaatcacctttttct
gttggtcagcttcctgcgcctgcatctaatattgagcagcaatttgttgtcaatcctaag
cttcatgctctgggcctgcagttgcattttcagagcgtacttcccattgctatggataga
gctatcaaagagattgtgtccagcattgtgcagcgcagtgtttctatagcaactcagaca
acaaaggaacttgttttaaaggactatgccatggaatcggatgagacccgcatatgtaat
gctgcacatttgatggttgccagtttgtcaggaagtctcgctcatgtgacatgcaaggaa
cctttacgtggttcaatatcgggccagcttcgtactttacttcagggattgggtattgca
agtgagctccttgaacaagctgttcagcttgttactaatgacaatctcgatcttggctgt
gcaatgatcgaacaagcagcaacggataaggctgtacagactattgatggagaaatagct
caacagctggccataagaaggaagcacagagacggtgttggtcccacattttttgatgca
agcctttatacacaaggacatatgggtggtttaccagaagctcttcgccctaaacctggc
cgcttatcccattctcagcaacgggtttatgaggattttgtccgcttacctttgcaaaat
caatcaagccaaagcccaagcgccgttcctgctggtccttcaacttcttctggtagcggt
ggcgtctccagggcgtatatggctggaactggacaaatgaaccccaacctttactcgtct
ggccttgtaaatgcaggagttagtgctgttccgcagccattggaaatatcagatgagata
gatacttcatctcagcttaatagtgcatcttctccccatcttgggatgggtgatagtgcg
gcttctaacaattttgaaaccgaggctattgctgaaccattcacatcggtgtcagctcct
gaattgcatccactggaaccttcaaacattgcaaaggagccgggagcttctttacagcca
tcgaatgcaacagctgcctctgaacgtgttggaaatagtatctcggaaccgttgctgaca
actggtgatgctttggataagtaccagattatttctgaaaagctggaaagcctggtgagt
gaagaagctaaggaggcagaaattcaggcgcttattgctgaagttccggtaatcatcctc
aaatgtattagtagagatgaggctgccttggcagtggcccagaaggctttcaagggattg
tatgaaaatgcatcaaatagtgcacatattggtgctcatcttgcaattctggcttcaatc
cgtgatgttagcaagctttttgttaaggagctaactagctgggttatttactctgacgag
gagcggaagttcaacaaagacattacggttggtttgatacggagtgaactgctaaacctt
gccgagtataatgtgcacatggctaaattacttgatgctggcagaaacaaatctgctact
gaatttgctatttctctaattcaaacgctggtgataagtgattctagagtaatatcagag
ctacaaaaccttgttgaagcgctggctaagattgcagcaagaccagggtctcctgagtct
ctacaacaactagtggagatcgctaagaaccctgctgctgctaatgctgctgcgctgtct
agtgttacttttgggaaggaggatagcaacaaacaatctagagacaaaaagattgctggg
cctgctactggtaccagagaagattatggtgtttctgaatctgttgaaccagatcctgca
ggctttcgagagcaggtctctatgctgtttgctgaatggtaccgtatttgtgaaattccg
ggagcgaatgatgcaactcatgctcattatatcctgcaattgcaccagagtggcctatta
aaaggcgatgaaacttcagatcgttttttccgcagactcacggaactttccgtttcgcat
tgcctttcgtctgaggttattagttccacccctcaatctcaccaagcacaacctctatcg
ttccttgcaattgatatctatgccaaattagtgttctcaattttgaagttttatcctgtg
gatcagggatctagtaaattattgctgctgccaaaggttcttgctgtcactgtcaaattc
atccagaaagactctgaggaaaaaaagatgacatttaatgctagaccatattttaggctt
ttcatcaattggctattggatctctgttccctggaccctgtttttgacggtgcaaacttt
caggttttaacagctttggccaatgccttccatgctcttcagcccctcaaagttccagga
ttcagctttgcatggcttgaacttgtaagtcaccgaagttttatgccgaaacttcttgct
ggaaatgctcagaaggggtggccttattttcagcggttgttggtggacctcttccagttt
atggagccctttcttaggaatgctgagctaggagaaccggtccagtttctgtataaaggg
actctcagggttttgttggttctccttcatgattttccagagtttctgtgtgactaccat
ttcagcttctgtgatgttatccctccaagctgcatacaaatgcgaaatataattttaagt
gcatttcctcgcaacatgaggcttcctgatccatcaactcccaacttaaagattgatcta
cttgcagagattagtcaatcccctcgcattctttctgaagttgatgcagctcttaaagca
aagcagatcaagggtgatgtagatgaatatctgaagacaaggcaacaaggatctccattc
gtgagtgaattgaagcagaagttgctgctctctccaagtgaagccgccaaggctgggaca
cgctacaatgtaccccttatcaactcccttgtactctatgttggaatgcaggctatccag
cagctgcaggcaaaaactcctcatgcacagtcgatgcccagtagtgttccatttgcagta
ttcttggttggtgctgctctggatattttccagactttaataatggacttggacacggag
gggcgttacttgtttttgaatgcagtcgctaatcaattgcgctacccaaacaatcacacg
cattatttctcctttattctgctctacctatttgcggaatcaaatcaggagatgatccaa
gagcagataaccagagtcctattagaacgcctgattgtgaatcgacctcatccgtggggt
ctcctgatcacgttcattgagcttataaagaatcctaggtacaacttttggagtcgacca
tttacaagatgtgctccagagatagagaaactgtttgagtctgtctcaagatcatgtggt
ggccctaaacctgtggatgagagcgtggtgtcaggtggaatacctgatatccattag
DBGET
integrated database retrieval system
