Candidatus Nitrosacidococcus tergens: NSCAC_0346
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Entry
NSCAC_0346 CDS
T06962
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit)
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ntg
Candidatus Nitrosacidococcus tergens
Pathway
ntg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ntg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NSCAC_0346 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ntg03021
]
NSCAC_0346 (rpoB)
03400 DNA repair and recombination proteins [BR:
ntg03400
]
NSCAC_0346 (rpoB)
Enzymes [BR:
ntg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NSCAC_0346 (rpoB)
Transcription machinery [BR:
ntg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NSCAC_0346 (rpoB)
DNA repair and recombination proteins [BR:
ntg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NSCAC_0346 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
CAB1274792
UniProt:
A0A7G1Q7W3
LinkDB
All DBs
Position
1:342723..346832
Genome browser
AA seq
1369 aa
AA seq
DB search
MSYSLTEKKRIRKDFSKLYSILDIPNLLATQINSFSDFLQKDISPEKRDNKGLHAVFESI
FPIKSYTGYAELHYVSYSLGSPLFNIRECYTRGLTYAAPLRVNLRLVLYDKEVSANEQIV
KDIKEQEVYMGEIPMMTPKGNFVINGTERVIVSQLHRSPGIVFEHDKGKTHSSGKLLFSA
RIIPYRGSWLDFEFDLKDCLYARIDRRRKLLITILLRALGYSTEEILALFFEVIAVHHQN
SSYTLDLVPQKLRGETFSFDIKDQSGRVVVEADRRITSLHIKKIEKAKINVLTIPESARE
FLTGKTLAQDIIDSDTGEILAKANNKITIELLDTINSANISHFHLIYTNDLDQGSFISDT
LQLDYTNSALEAQIEIYRMMRPGEPPTKEAAQNLFQNLFFNPERYDLSAVGRMKFNRHLG
RESTTGSGTLSKEDIVDVIKALIKIRNGLGSVDDIDHLGNRRIRSVGEMAENQFRIGLIR
VERVVRERLGLAESEGLTPQELINAKPVSAAIKEFFGSNQLSQFMDQNNPLSEITHKRRI
SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLISSLSIYARTNQYGFIETP
YRKVIERKVTEEIDYLSAIEEGEYVIAQANATISERGDLSDTLVSCRYKNEFTLLPPEKV
QYIDISPKQIVSAAASLIPFLEHDDANRALMGSNMQRQAVPTLKSEAPLVGTGMERVVAR
DSGVMINANRAGTVDFVDSTRIVVRVNTQKSNLDQQQGVDIYNLTKYARSNQNTCINQRP
LVKPGDIVNTGDVLADGPSTNMGELALGQNLLVAFMPWNGYNFEDSILISEKVVEEDRFT
SIHIEELICLARDTKLGTEEISSDIPNVSEAALSKLDEVGIVYIGAEVSPGDILVGKITP
KGETQLTPEEKLLRAIFGEKASEVKDTSLRVPSGIHGTVIGVQVFTRDGVEKDARVLSIE
EMELAKIKKDLEDEFRIIEADIYQRLEQILLGKTVKKEIGTLLSGIKITVDNLKTLPKKQ
WVDIKLNDEESNHQIKSTLTQLKELRSITDKNLEQQRIKLISGHDLPPGVQKMVKVSLAV
KRRAQPGDKVAGRHGNKGVISTIVPIEDMPYMADGTPIDMVLNPLGVPSRMNIGQILEAH
LGWAAKELGKKIKDMLDLEKLDILKLRSFLEQIYNTGGKKEDINSLNDQELIELAYNLSD
GVPMGTPVFDGASEEDIKNMLKLAGLPTSGQTTLYDGRTGEAFTRPITVGYMHMLKLNHL
VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALESYGAAYTLQEMLTIKSDDM
SGRTKIYKNIVDDNYQMEANIPESFNVLVKEVHALGIDIELKRKSKGIP
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgtcttactcactaactgagaagaaacgcattcgcaaggattttagtaaactctatagt
atattagatattcctaacctactagcaacacaaattaactctttttcagatttcttacaa
aaggatatatctccagagaaaagagataacaagggtttgcatgctgtattcgaaagtata
tttccaattaaaagctatactgggtatgctgaattacattatgtcagttattctcttgga
tctccgctttttaatattagagagtgttatactcgtggattaacctatgcggcaccatta
cgagttaatttacgccttgttctttatgataaggaagtttctgcaaatgagcaaatagtt
aaagatataaaagagcaagaagtttacatgggtgaaatacccatgatgacaccaaaaggt
aattttgtcattaatggaactgagcgggttattgtttctcaattacaccgttcacctggg
attgtatttgagcatgataaaggaaaaactcattcttctggaaaattgcttttttcagct
agaataattccttaccgtggttcttggctagattttgaatttgatctaaaagattgccta
tacgctcgtatagatcgtaggcgtaaattattaatcacaatattgttacgggcacttggc
tatagtactgaagaaatacttgctttattttttgaggtaattgctgttcatcatcaaaat
tcaagctatacattggatttagtacctcaaaaacttcgaggagagactttttcttttgat
attaaagatcagagcggaagagtagttgtcgaagctgatcggagaattacatcattacat
attaaaaaaatagaaaaagcaaaaataaacgtattaactatccccgaatctgctagagaa
tttttaacaggaaagacgctggctcaagatatcatcgactcagatactggagaaatttta
gctaaagcaaataataaaattacgattgaattattagacactataaacagtgccaatatt
tcgcattttcaccttatttataccaatgatctagatcaaggttcatttatttcagatacg
ctacaactagattacactaactcagctctagaggcgcagatagaaatctatcgaatgatg
cggcctggagaacctcctacaaaagaagcggctcaaaatctttttcagaatttatttttt
aatcctgaacgttatgatctctctgcagtggggcgaatgaaattcaaccgccatcttgga
agagagagtactactggttctggaacattatcaaaagaagatattgttgatgttattaaa
gcacttatcaaaattcgtaatggattgggaagtgtagatgatattgatcatttgggtaat
cgcaggatacgtagtgttggtgaaatggctgaaaatcagtttcgtattggtttaatacgt
gtagagcgagtagtaagagaacggttgggtcttgctgaatcagaggggttaacgcctcaa
gagttgattaatgcgaaaccagtatctgcagcaattaaggaattttttggttcaaatcag
ctttcacagtttatggatcaaaataaccctttatcagagataacacataagcgaagaata
tcggctctaggaccaggcggacttactagagagagagcagggtttgaagtacgtgatgtg
caccctactcattatggtcgagtgtgccctattgaaacaccggaaggtccaaatattggt
ttaattagttctttatcgatttatgctagaactaatcagtatgggtttatagaaacacca
tatcgaaaagttatagaaaggaaagtaactgaagaaattgattacttgtcagcaattgaa
gagggagaatatgttattgctcaagctaatgccactattagtgaaagaggtgatctatca
gatacgttagtatcttgccgatataaaaacgaatttactcttttaccaccagagaaagtt
caatatattgatatctctccaaagcaaatagtatctgcagcggcatctttaattcctttt
ttggaacatgatgatgcaaatcgagccttaatgggttctaatatgcagcgccaagcagtc
cctactttaaaatcagaagcacctctagtaggcacaggaatggagcgagtagtagcgcga
gattcaggtgtgatgattaacgctaatcgtgcgggcactgtggattttgttgattctaca
aggattgtggtaagagtaaatacccaaaaatcgaacttagatcaacagcaaggtgtagat
atttataaccttaccaaatatgctcgttctaatcaaaatacctgtattaatcagagaccc
ttagttaaaccaggcgatatagtaaatacaggggacgttttagcggatggtccttcaaca
aatatgggtgagcttgcattaggacaaaacttacttgtagcttttatgccatggaatggg
tacaactttgaagattcgattcttatttcagagaaagtggtagaagaggacaggtttact
tcaattcacatagaggagcttatttgtttagctcgagacactaaattaggtacagaagaa
attagtagtgatatacctaatgtaagcgaggcagctttatctaaattagatgaagtaggc
attgtatatataggtgcagaagtaagtcctggtgatattttagtaggtaaaataactccg
aaaggagaaacacaacttacacctgaagaaaaactattacgtgctatttttggtgagaaa
gcttctgaagtaaaagatacctctttacgtgtaccttctggaatacatggtacggttatt
ggtgttcaagtattcacacgcgatggtgtagaaaaagatgccagagtattatccattgaa
gaaatggagcttgctaaaataaaaaaagatctagaagatgagtttcgaattatagaagct
gatatttatcaacgcttggagcaaatcttactagggaaaactgtcaaaaaagagataggt
actctattatcaggaataaaaattactgtagataatcttaaaactttacccaaaaagcaa
tgggttgatatcaaattaaacgatgaagaatctaatcaccaaattaaatcgaccttaact
caattaaaggaattaagatccataacagataagaatttagagcaacagcgtattaaactg
atttctgggcatgatttacctccaggagtacaaaaaatggtcaaagtgtctctagctgtg
aaacgccgtgctcagccaggtgataaagtagcgggtcgccacggaaacaaaggggtgatc
tcaactattgtgccaatagaggatatgccttatatggcagatggtactcctatagatatg
gtacttaatcctttaggggttccttctagaatgaatattggacaaattctagaagcccat
ttagggtgggctgctaaagagcttggtaaaaaaattaaagatatgcttgatctagagaaa
ttagatatattaaaactccgtagttttttagagcaaatttataatactggtggtaaaaaa
gaggatataaattctttaaacgatcaagagcttatagagttagcatataacttatccgat
ggtgtccctatgggaactccagtatttgatggggcttctgaagaagatattaaaaatatg
ttaaaactagctggactgcccacaagtggacagactactctctatgatggacgaacagga
gaggctttcacgcgcccaattactgtagggtatatgcatatgctaaaactaaatcattta
gttgatgataagatgcatgctagatcaacaggcccttatagtttagttactcagcagcct
ttaggtgggaaagcccaatttggtgggcaacggtttggagaaatggaagtttgggcgctt
gaatcctatggagctgcatacactctgcaggagatgcttactataaaatcagatgatatg
agcgggcgtactaaaatttataaaaatattgtagatgataattatcagatggaggcaaat
ataccagaatcctttaatgtacttgtaaaggaagtgcatgctttaggaattgatattgaa
ttaaaacgtaaaagtaaaggaataccataa
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integrated database retrieval system
