KEGG   Nicotiana tomentosiformis: 104107618
Entry
104107618         CDS       T05025                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
nto  Nicotiana tomentosiformis
Pathway
nto04120  Ubiquitin mediated proteolysis
nto04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104107618
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    104107618
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:nto04121]
    104107618
Enzymes [BR:nto01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     104107618
Ubiquitin system [BR:nto04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    104107618
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     104107618
SSDB
Motif
Pfam: WD40 zf-C3HC4_2 zf-C3HC4 WD40_like zf-C3HC4_3 zf-RING_2 zf-C3HC4_4 zf-RING_UBOX DUF1664 U-box zf-RING_5 YpoC zf-RING_6 zf-RING_10
Other DBs
NCBI-GeneID: 104107618
NCBI-ProteinID: XP_009614766
LinkDB
Position
Unknown
AA seq 671 aa
MVESSIGGVVPAVKGSVRVGGKEEGGGSVRDEDETEWELDRELLCPICMQIIKDAFLTSC
GHSFCYMCIITHLHNKSDCPCCSHYLTTSQLYPNFLLDKLLKKTSARQISKTASPVEQFR
HSLEQGCDVSIKELDALLSMLSERKRKLEQEEAERNMQILLDFLQMLRKQKVDELNEVQN
DLQYIKEDINSVERHRIDLYRARDRYSMKLRMLVDDPIGKKPWSSSTDRNFGGLFSTSRN
APGGLPTGNLTYKNVEGKAQISSPGPHRKDNSISELNSQHMSQSGLAVVRKKRVNAQFND
LQECYLQKRRLLANKSHVKEEKDVDVIKREGYSAGLEDFQSVLSTFTRYSRLRVIAELRH
GDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADVHCPVVEMSTRSKLS
CLSWNKYTKNHIASSDYDGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTDPSMLVSGSD
DCKVKVWCTKQEASVLNIDMKANICCVKYNPGSGVHIAVGSADHHIHYYDLRNTSQPVHI
FSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENLPIRTLRGHTNEKNFVGLTVNNEF
LACGSETNEVFVYHKAISKPVTWHRFGSPDVDDADEDAGSYFISAVCWKSDSPTMLAANS
QGTIKVLVLAA
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggtggaaagttcgattgggggagtagtgccagcagtgaaggggtcagtgagggtgggg
ggtaaagaggagggtggtggtagtgtaagggatgaagatgaaacagaatgggaattggat
agggaattgttgtgtccaatttgtatgcagattataaaggatgcatttttaacttcctgt
ggccatagtttttgctatatgtgtataatcactcaccttcacaataagagtgattgtcct
tgttgttctcattatcttaccactagccaactctaccctaatttccttctagacaagcta
ctgaagaagacatctgctcgtcagatttcaaaaactgcatctcctgttgaacaatttcgt
cattcattggaacagggttgtgatgtatcaattaaggagctggacgctctattgtcgatg
ttgtcagagagaaagaggaagttggagcaggaagaagcagagcgaaatatgcaaattctg
ctagacttcttacaaatgttaaggaagcaaaaagttgatgaactcaatgaggtgcaaaat
gatctgcaatacatcaaagaggacataaattcagtggagagacatagaatagacctatac
cgagctagggaccggtactcaatgaagcttcgaatgctagtagatgatccaattgggaaa
aaaccttggtcttcatccactgataggaactttggtggtcttttctccacttcaaggaat
gcacctggaggattacctactggaaacttgacatacaaaaacgtggaaggcaaagctcaa
ataagctctcctggaccacatagaaaagataattctatcagtgaattgaattcacaacat
atgagtcaatcaggtctggctgtggtgaggaagaagcgtgtaaatgcacagttcaatgat
ctccaagaatgttacttgcaaaagagacgtctattggcgaacaaatcgcatgttaaggag
gaaaaggacgtagatgtcataaaaagagaaggttacagtgcaggactagaagatttccag
tctgtacttagcactttcactcgttatagtcggttaagagtcattgctgagcttcggcat
ggggatctttttcactcagccaatatcgtgtcaagcattgaatttgatcgtgatgatgag
ttgtttgctactgctggagtttcacggcgtataaaagtttttgacttctcttcggttgta
aatgaacctgcagatgtgcattgccctgttgtcgaaatgtcaactcgttctaagctgagc
tgcttgagctggaataagtataccaagaaccacatagcaagtagcgattatgatggaata
gtaactgtatgggatgtgaccactagacagagtgtgatggaatatgaagagcatgagaaa
cgggcatggagtgttgatttttcacgcacagacccctcgatgcttgtatctggtagtgat
gattgtaaggtcaaagtttggtgcactaagcaggaagcaagtgttcttaatattgacatg
aaggcgaatatatgctgtgtaaaatataatcctggatccggtgtgcatatagcggttggc
tctgcggatcatcatatccattattatgacttaaggaacaccagccagccggttcacatt
tttagtggccatagaaaagctgtttcatatgtaaaatttttgtccaacaatgagcttgct
tcagcatcaacagatagtacgctacggttgtgggatgtaaaagaaaatctgcctattcgc
acacttagaggacatacaaacgagaaaaactttgttggtctcacagtaaacaatgaattc
cttgcttgtggcagtgaaacaaatgaagtatttgtgtaccataaggcgatctccaaacct
gttacttggcatagatttggttccccagatgtggatgatgccgatgaagacgcaggatct
tatttcattagcgcggtatgttggaagagtgatagccctacgatgttagccgctaacagc
cagggaactataaaagtgttagtccttgcagcctga

DBGET integrated database retrieval system