Nicotiana tomentosiformis: 104107618
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Entry
104107618 CDS
T05025
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04120
Ubiquitin mediated proteolysis
nto04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104107618
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
104107618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nto04121
]
104107618
Enzymes [BR:
nto01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104107618
Ubiquitin system [BR:
nto04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104107618
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
104107618
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
zf-C3HC4
WD40_like
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-RING_UBOX
DUF1664
U-box
zf-RING_5
YpoC
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
104107618
NCBI-ProteinID:
XP_009614766
LinkDB
All DBs
Position
Unknown
AA seq
671 aa
AA seq
DB search
MVESSIGGVVPAVKGSVRVGGKEEGGGSVRDEDETEWELDRELLCPICMQIIKDAFLTSC
GHSFCYMCIITHLHNKSDCPCCSHYLTTSQLYPNFLLDKLLKKTSARQISKTASPVEQFR
HSLEQGCDVSIKELDALLSMLSERKRKLEQEEAERNMQILLDFLQMLRKQKVDELNEVQN
DLQYIKEDINSVERHRIDLYRARDRYSMKLRMLVDDPIGKKPWSSSTDRNFGGLFSTSRN
APGGLPTGNLTYKNVEGKAQISSPGPHRKDNSISELNSQHMSQSGLAVVRKKRVNAQFND
LQECYLQKRRLLANKSHVKEEKDVDVIKREGYSAGLEDFQSVLSTFTRYSRLRVIAELRH
GDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADVHCPVVEMSTRSKLS
CLSWNKYTKNHIASSDYDGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTDPSMLVSGSD
DCKVKVWCTKQEASVLNIDMKANICCVKYNPGSGVHIAVGSADHHIHYYDLRNTSQPVHI
FSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENLPIRTLRGHTNEKNFVGLTVNNEF
LACGSETNEVFVYHKAISKPVTWHRFGSPDVDDADEDAGSYFISAVCWKSDSPTMLAANS
QGTIKVLVLAA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggtggaaagttcgattgggggagtagtgccagcagtgaaggggtcagtgagggtgggg
ggtaaagaggagggtggtggtagtgtaagggatgaagatgaaacagaatgggaattggat
agggaattgttgtgtccaatttgtatgcagattataaaggatgcatttttaacttcctgt
ggccatagtttttgctatatgtgtataatcactcaccttcacaataagagtgattgtcct
tgttgttctcattatcttaccactagccaactctaccctaatttccttctagacaagcta
ctgaagaagacatctgctcgtcagatttcaaaaactgcatctcctgttgaacaatttcgt
cattcattggaacagggttgtgatgtatcaattaaggagctggacgctctattgtcgatg
ttgtcagagagaaagaggaagttggagcaggaagaagcagagcgaaatatgcaaattctg
ctagacttcttacaaatgttaaggaagcaaaaagttgatgaactcaatgaggtgcaaaat
gatctgcaatacatcaaagaggacataaattcagtggagagacatagaatagacctatac
cgagctagggaccggtactcaatgaagcttcgaatgctagtagatgatccaattgggaaa
aaaccttggtcttcatccactgataggaactttggtggtcttttctccacttcaaggaat
gcacctggaggattacctactggaaacttgacatacaaaaacgtggaaggcaaagctcaa
ataagctctcctggaccacatagaaaagataattctatcagtgaattgaattcacaacat
atgagtcaatcaggtctggctgtggtgaggaagaagcgtgtaaatgcacagttcaatgat
ctccaagaatgttacttgcaaaagagacgtctattggcgaacaaatcgcatgttaaggag
gaaaaggacgtagatgtcataaaaagagaaggttacagtgcaggactagaagatttccag
tctgtacttagcactttcactcgttatagtcggttaagagtcattgctgagcttcggcat
ggggatctttttcactcagccaatatcgtgtcaagcattgaatttgatcgtgatgatgag
ttgtttgctactgctggagtttcacggcgtataaaagtttttgacttctcttcggttgta
aatgaacctgcagatgtgcattgccctgttgtcgaaatgtcaactcgttctaagctgagc
tgcttgagctggaataagtataccaagaaccacatagcaagtagcgattatgatggaata
gtaactgtatgggatgtgaccactagacagagtgtgatggaatatgaagagcatgagaaa
cgggcatggagtgttgatttttcacgcacagacccctcgatgcttgtatctggtagtgat
gattgtaaggtcaaagtttggtgcactaagcaggaagcaagtgttcttaatattgacatg
aaggcgaatatatgctgtgtaaaatataatcctggatccggtgtgcatatagcggttggc
tctgcggatcatcatatccattattatgacttaaggaacaccagccagccggttcacatt
tttagtggccatagaaaagctgtttcatatgtaaaatttttgtccaacaatgagcttgct
tcagcatcaacagatagtacgctacggttgtgggatgtaaaagaaaatctgcctattcgc
acacttagaggacatacaaacgagaaaaactttgttggtctcacagtaaacaatgaattc
cttgcttgtggcagtgaaacaaatgaagtatttgtgtaccataaggcgatctccaaacct
gttacttggcatagatttggttccccagatgtggatgatgccgatgaagacgcaggatct
tatttcattagcgcggtatgttggaagagtgatagccctacgatgttagccgctaacagc
cagggaactataaaagtgttagtccttgcagcctga
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