Nicotiana tomentosiformis: 104107904
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Entry
104107904 CDS
T05025
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104107904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104107904
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104107904
Spliceosome [BR:
nto03041
]
Complex A
U2 snRNP components
U2 related factors
104107904
Complex B
104107904
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
104107904
NCBI-ProteinID:
XP_009615120
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MEEKHKSKREEESKKRHRDSKEDRGDRDKHRDRDHHRSSSDKKDREKISRYDREKSADEK
YGERDRDRDRDRAKHKDRHRDKEREKSRGRDDNDDERPSRDRVKEREKKDKEDRENRERE
RERERDREKEREKKRDRERREKEKEKEREKERREREREKERNREKDRHREVENGSDDEVD
AKDRDRKRRKRNDDDHKERERDRERSSKSNNKLREDSTDEVLAEEKNEKSREEDFAEEQR
KLEDEMEKRRRRVQEWQELKRKKEESEREKFGVAGGAEEEPKLGKTWTLEGESDDEDAEG
KHGMDIDVDDNGKAMDDDDGADKAASSPVIQNGNDELMGDDDDIDPLDAFMNSMVLPEVE
KLNNAVVNNLDGENSKNGTHKGKEEQQPKKMSVKKTMGRIIPGEDSDSDYGNVENEGDDP
LEEEDDEEFMKRVKKTKAEKLSIVDHSKIDYPPFRKNFYIEVKEISRMSAEEVSAYRKQL
ELKIHGKDVPKPIRTWHQTGLSSKMLDTIKKLNYEKPMSIQAQALPVIMSGRDCIGIAKT
GSGKTLAFVLPMLRHIKDQPPLMSGDGPIGLIMAPTRELVQQIHSDIKKFTKAMGLVCVP
VYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG
FEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE
VRPEGERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKDQTDR
ESTISDFKSNVCNLLIATSIAARGLDVKELELVINYDVPNHYEDYVHRVGRTGRAGRKGC
AITFLSEDDARYAPDLLKALQLSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFK
FNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDLSQQAALAQAAALVAASK
ASMASAATPVSAGQLLPNGGLPVALPGVLGINIPGATAAVAGNGLPIGSNDVTARATALA
AALNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ
YVPPGKAPGLLDRKLYLFIEGPTEQSVKRAKAELKRVLEDITMQASSLPGSAQPGRYSVV
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaagcacaagtcgaagagagaggaagaatcgaagaagcgtcaccgtgatagt
aaggaggatcgaggagatcgtgacaagcatagggacagagaccaccatcgttcctcatca
gataagaaggatcgagagaaaatcagccgctatgatagagaaaaaagtgccgatgaaaag
tacggtgagagggatagggatagagatagagatagggcaaagcacaaggatagacacagg
gataaggagcgggaaaaaagcaggggccgtgatgataatgatgatgaaagacctagtaga
gatagagttaaagaacgagaaaaaaaggataaggaagatcgtgaaaacagagagagggag
agggagagggagagggatagagagaaagagagggagaagaagagagatcgagaaaggagg
gagaaagagaaagagaaagagagagaaaaggagaggagagaaagagagagagaaaaggag
cggaacagggaaaaggatagacaccgtgaagtagaaaatggtagcgatgatgaagttgat
gccaaggatcgagatagaaagaggcgaaagagaaatgatgatgatcataaggagagggag
agggatcgtgaaaggagtagcaaatccaacaacaagctcagggaagatagcactgatgaa
gtattagcagaagaaaagaatgagaagagtcgagaagaggattttgctgaggagcaaagg
aaattagaggatgagatggagaagcgaaggaggagagttcaagaatggcaagagctaaag
agaaaaaaagaggagtccgaaagggagaagtttggtgttgctggaggtgctgaagaagaa
cctaaattgggcaaaacttggactttggaaggagaatctgacgatgaagatgctgagggg
aaacatggcatggatattgatgtggatgataatggcaaggctatggatgatgatgacggt
gcggacaaggcggctagttcccctgtaattcagaatggcaatgatgagttaatgggggac
gacgatgatattgacccgttggatgcttttatgaactctatggttttgcctgaagttgag
aagcttaacaatgccgtagtcaataatcttgatggtgaaaattctaaaaatggtactcat
aaaggcaaagaagaacaacagcctaagaagatgagtgtgaagaagactatgggaagaatt
attcctggtgaagattcagattcggattatgggaacgttgagaatgaaggtgatgatcct
ttggaggaagaggatgatgaagagtttatgaaacgggtgaagaaaaccaaggccgagaaa
ctatcaatagtagatcattcgaaaattgactatcctcctttcagaaagaatttttacata
gaagttaaggagatttcaagaatgagtgctgaagaggtttctgcttacaggaaacaactg
gaattgaagatccatggaaaggatgttcctaaaccgatcagaacgtggcaccagacggga
ctgtcctccaagatgttagacactataaagaaactgaattatgagaagcccatgtctatt
caggctcaggctctgccagtaattatgagtggccgagattgcattgggattgctaagacg
ggttctggtaaaactctggcatttgtattaccaatgctgagacatattaaggaccagcct
cctctgatgtctggagatggtcctattgggctgataatggcccctacgagagagcttgtg
cagcaaattcatagtgatattaagaagttcactaaggcgatgggtctcgtttgtgtacct
gtgtatggaggttctggggttgctcagcaaattagtgaattgaagcgaggagctgaaatt
gttgtgtgcactccgggcaggatgattgatatactttgtacaagtggtggaaagattacg
aatctgcgaagagtcacttacttggtcatggatgaagctgatcgaatgtttgacatggga
tttgaacctcagatcacaagaattgtccaaaacacacggcctgaccgtcagacagtcctg
ttctctgcaacttttcctcgccaggttgaaatattagctcgtaaagtattgaacaaacct
gttgaaatacaggtaggtggtaggagtgttgtgaacaaggatataacacaactggttgag
gtgaggccagaaggtgaaagattccttcggctccttgaattacttggtgaatggtatgaa
aaaggaaaaattttgatatttgttcacacacaggagaaatgtgatgctttatttagggat
ttgctcaagcatggttatccctgcctctcccttcatggggcaaaggatcagactgatcgc
gagtccaccatatccgactttaaaagtaatgtgtgtaatttgttgattgctactagtata
gcagccaggggcttagatgtcaaggagcttgaactggtaatcaattatgatgttccgaac
cattatgaggactatgttcatcgcgttggtcggactggtcgggctggtaggaaaggttgt
gccatcacattcttatctgaagatgatgcaagatatgcacctgatcttttgaaagcttta
caactgtcggagcaagttgttccagatgacctgaaagctctcgctgatagtttcatggcg
aaggtgaatcagggacttgagcaagcacatgggactggttatggtggtagtggttttaaa
tttaatgaagaagaggatgaagtgagaagagccgccaagaaagcacaggcaaaagaatat
ggatttgaggaagataaatcagattcagaggatgaagatgatggaattagaaaagcaggt
ggcgacctctctcagcaggctgcccttgctcaggctgctgctcttgttgctgcttccaaa
gcgagtatggcttcagcggcaactccagtttcagctggtcagcttctccccaatggtggc
ttgcctgttgcattgcctggtgtacttggtattaatataccaggtgcaacagcagctgtt
gctggaaatggactgccaattggctctaatgatgtgacagccagagcaacagcattggca
gctgccttgaacttgcagcacaacttagcaaagattcaggccgatgcaatgcctgaacat
tatgaagcagaattagaaataaatgatttccctcaaaatgctcgctggaaggtgacgcac
aaggagactttgggtcctatttctgaatggacgggagctgccatcaccactcgaggacag
tatgttccacctggcaaggcaccagggcttctggataggaagctgtacttgttcattgag
ggccccacggaacaatctgtcaagagagcaaaagcagaactaaaacgtgttttggaggac
attaccatgcaagcatcatctcttcctggttcggctcagccaggcagatactcagttgta
taa
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