Nicotiana tomentosiformis: 108946751
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Entry
108946751 CDS
T05025
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108946751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
108946751
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
108946751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_8
TPR_16
TPR_14
TPR_17
TPR_12
TPR_7
TPR_9
TPR_19
TPR_6
ARM_TT21_C
BTAD
TPR_NPHP3
TPR_10
Motif
Other DBs
NCBI-GeneID:
108946751
NCBI-ProteinID:
XP_070051317
LinkDB
All DBs
Position
2:41039463..41069042
Genome browser
AA seq
1172 aa
AA seq
DB search
MSEEDDAIRRLEEAVVDDPSLHFDLGVLLWDKGGDIQEKAAQHFLIGAKLNPQNGAAFRY
LGHYYARVAVDSQRALKCYLRAVNLNPDDSIAGEAICDILDGSGKESLEIAICREASEKS
PRAFWALCRLGYLLVNQKKWSEAVQSLQQAIRGYPTCADLWEALGLSYQQMGMFTAAVKS
YARAIELEESRVFALVESGNVHLMLGSFRKGIEQFRQVLLISPLNLSAHHGLASALLSLA
KESIDSGAFKWGASLLEEASKVALVSTSIVGNMSCSWKLHGDIQLIYAKCFPWMDEGXGS
GADEKSFSSSILSWKRNCCLAARSACRSYQRALHLSPWQANVYTDVAIASELLLSLKENC
KDDINSWFVSEKMCLGGLLLEGCNSEFWVALGCLSDHSALKQNAFIRAVQLEVSLAVAWA
HLGKLYRLEGESQLAQLAFDRARSIDPSLSLPWAGMSADAAARNLKPDEAYECCLRAVQI
FPLAEFQTGLVKLALQSGYLRSSEAFGAIQQALQRSPQYPESHNLKGLVCEARGDYESAV
ASYRLARLAARVFAGKVLKSYPADISINLTRSLCMAGNADAAIQECKYLENKGLLDVEGL
QLYALSYWKLGKYDLALSVAKRLASSALPTEHSLAAASISFVCRLVYHMSGQELAIRNIL
QLPRRAFESSKVRLVASAIHALDESHQLDSVVSSVRESLSSSKEIAALDFLATLGLLVKH
GSNDCLGVQKGVNYLRRALHVSPNSNLIRNLLGYLLLSSKEWKDVHISARCFIVDPSEHQ
KQEGVKSSVEIFGAGAVACCTMGSSKKTLPMFICRESLTSGCKTIQLLQKCVHQQPWDHT
SYYLLILNYLQKAREEKFPHNMCVVLERLISVALQNELYAKEDISYQYQKFQLLLCAAEV
SLQCGNNFNCIMRAKSALEMQLSDNYLFFAHLLLCRAYAVEGNYIGLHEEYIRCLELKTD
YHIGWICLKFLESQYKLHSDSSSLALAFQECCKEIKTSWNMWIAIYNLVQGLTAVWNGEF
IDAEESIAQACSLAGGESCLFLSHGAICMEIARQQSDSEFLSLAMRSLKKAKDSSSMPLP
FVSLLLAQAEASLGSESKWEKNLIEEWSSWPPEIRPAELFFQMHLLARRLTEGSGATSNL
EPSTSPLRWILEAIHMNPSCLRYWRALLKFME
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagaagacgatgctataagacggttagaagaagcagttgtggacgatccttcg
ctccactttgatctcggggtcttgttatgggataagggaggagacattcaggaaaaagcc
gctcaacattttctcataggggcgaagctcaacccacaaaacggtgctgctttcagatat
ttgggacattactatgctcgagtggctgtcgactctcagagggctctcaagtgttatctg
agagccgtcaaccttaatcccgatgattcaattgctggggaagcaatatgtgatatactg
gacggaagtggaaaagagagcttggagatagctatatgccgtgaagcttcagagaagtca
cccagggccttttgggctttatgcagattgggttaccttttggtcaaccaaaagaagtgg
tccgaagcagtgcagagtcttcagcaagccattagaggctatcccacatgtgctgatttg
tgggaggctctgggtctttcctaccagcaaatgggcatgtttacagccgctgttaagtcc
tatgcaagagctattgaattggaggaatcaagagtatttgcattggtggaaagtggaaat
gtccatctgatgcttggttcatttcgaaagggaatagagcagtttcggcaagttttacta
atctcacctctgaatttgtctgcgcatcatgggcttgcctctgcactccttagtttggca
aaggaatctattgattctggtgcctttaaatggggagcttcactcttagaggaagcctcg
aaagtggctctagtaagtacttccattgttggcaatatgtcttgttcttggaagctgcat
ggagatattcagctcatatacgcgaaatgttttccatggatggatgaaggatagggatca
ggagctgatgaaaaatcattcagtagttcaatcctgtcatggaagagaaactgttgctta
gcagccagatctgcttgtcgctcctaccagcgggctttgcatttgtccccttggcaagct
aatgtgtatactgatgttgccattgcatctgagcttcttttatcgttaaaggagaactgt
aaagatgacattaactcttggtttgtgtctgaaaagatgtgccttggaggattattactt
gaaggttgcaatagcgagttctgggtagccttaggatgtttatctgatcattctgcattg
aaacaaaatgctttcatacgggcggtgcagttggaagtttctcttgcagttgcatgggca
catcttggaaagctttatcggctggagggggaaagtcaattggctcagctagcatttgat
cgtgcaagaagtattgatccttcactttcattgccatgggcaggcatgtcagctgatgct
gctgcaaggaatctgaaaccagacgaggcttatgagtgctgtcttcgggcggttcagatc
tttccacttgcagaattccaaactggtctagttaagcttgctctgcagtctggttatctg
cgatcttcagaggcatttggagccatccagcaggctttgcagcgttcacctcagtatcct
gaatctcacaatctgaaagggctagtttgtgaggcacgaggtgattatgaaagtgctgtt
gcctcgtatagactggcacgccttgctgccagagtttttgcaggaaaagttttaaaatcg
tatccagcagatatatctattaatttgaccaggtcgctttgtatggcaggaaatgctgat
gcagctatccaagaatgtaaatatttggaaaacaaaggtcttctggatgtagaaggtttg
cagctttatgcgctttcttattggaaacttggcaagtatgaccttgctctttcagtggca
aaaagactggcctcgtctgctttaccaacagaacattcattggctgctgcctccatcagt
ttcgtctgtagattagtgtatcatatgtcagggcaggaattagctattagaaacattttg
caactgcccagaagagccttcgagagttcaaaagttaggcttgtagcatctgctattcat
gcattagatgaaagtcatcagcttgactcagttgtttcaagtgttcgtgagtctctttca
tctagcaaagagattgctgcactggatttcctagccacacttggcttactggtcaaacat
ggatctaacgactgcttaggagttcagaagggagtcaattatctaagaagagctcttcat
gtttctccaaacagtaatttgataaggaaccttcttggttatctattattatccagcaaa
gaatggaaagatgttcacatttcagctcgatgcttcatagtggatccttctgaacatcag
aagcaggaaggtgttaaatccagtgttgagatttttggtgctggagcagttgcttgctgt
actatggggagcagcaagaagacattacccatgttcatctgtagagaaagtttgacatcg
gggtgcaaaacaatccagctgctgcagaagtgtgtccatcagcagccttgggaccatact
tcctattacctgcttatactaaactatctgcaaaaggcgcgggaggagaaatttccgcat
aacatgtgtgttgttcttgagcgattaataagtgtggcccttcaaaatgagctttatgcg
aaggaagacatttcgtaccaataccaaaagttccagcttctgctttgtgctgcggaggtt
agtttgcaatgtgggaataatttcaattgcattatgcgtgcaaaaagtgctctagagatg
cagctttcagataactacctcttctttgcacacttgctactgtgtcgtgcctatgctgtg
gaaggtaattatattgggcttcatgaagagtacattaggtgcttggagctcaaaactgat
tatcatattggttggatttgccttaagtttcttgaaagtcaatacaagctgcactcagat
tccagttcactagccttggcctttcaagagtgttgcaaagagataaagacttcgtggaac
atgtggattgctatatataatttggttcaaggtctaactgcagtttggaatggggaattt
attgacgcagaagagtcaattgcacaagcttgctcgttagctggtggcgagagttgcctt
tttctcagccatggtgctatttgcatggagattgccagacaacagtccgattcagagttt
ctatcacttgctatgagaagtctgaagaaagcaaaagatagttcttcgatgccgttaccc
tttgtctcactactactggcgcaagcagaagctagcctcggctctgaatcaaagtgggaa
aaaaacctcattgaggaatggtcatcttggccaccagagattaggcctgctgaactattt
ttccagatgcatttgcttgctagacggctgacagaaggttctggagctacatccaatctg
gagccatctacaagtcctctaagatggatacttgaagcaatccatatgaatccgtcttgt
ttgagatactggagagctttgttgaaatttatggagtaa
DBGET
integrated database retrieval system
