Nonlabens ulvanivorans: R1T42_00810
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Entry
R1T42_00810 CDS
T09493
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
nul
Nonlabens ulvanivorans
Pathway
nul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R1T42_00810 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nul03019
]
R1T42_00810 (rny)
Messenger RNA biogenesis [BR:
nul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R1T42_00810 (rny)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
KH-I_KHDC4-BBP
KH_KhpA-B
Muskelin_N
UPF0154
KH_2
ZapG-like
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
WOI24235
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All DBs
Position
204874..206442
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AA seq
522 aa
AA seq
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MTPIIYAIVALIVGLAIGYFIAKSIVEKGKASQLIADAQKEAKSLVKEAQVEGEKIKNEK
TFKAKEKFIELKSQHEKEIMNREKKMSDAEKRTRDKESKVSSELAKTKQLEQKLSNKIND
LDSKRESILKKQAEVEKMHVSQVKQLEVISGMSGEDAKKQLVESLKDKAKTEAMSIVQST
IEEAKLTATQEARKVIINTIQRIGTEEAVENCVSVFNLESDDVKGRIIGREGRNIRAIEA
ATGVEIIVDDTPDAIILSCFDSVRREVARLSLHKLVTDGRIHPARIEEVVAKTRKQIDQE
IAEVGKRTVIDLGIHGLHPELIKMVGRMKYRSSYGQNLLQHSREVAKLCGTMAAELGLNP
KLAKRAGLLHDIGKVPETEDETPHAILGMNLAEKHGEKPEVCNAIGAHHDEIEMTSLLSP
IVQVCDAISGARPGARRQVLDSYIQRLKDLEEIAFGFNGVEKAYAIQAGRELRVIVESEK
VSDDKAAQLSFEISQKIQTDMTYPGQVKVTVIRETRAVNIAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacaccaatcatatatgctatcgtagcattaatagtaggtctagcaataggctacttc
atagcaaaatcaatagttgaaaaaggcaaagcctcacaacttatagccgatgcacagaaa
gaagcaaaatctttagttaaagaagcccaagtagaaggcgaaaaaattaaaaatgaaaaa
acttttaaggcaaaagagaaatttatagagcttaaatcgcaacatgagaaagaaatcatg
aatcgcgaaaagaaaatgagcgatgctgaaaagcgtacaagagataaggagtctaaagtg
tctagtgaacttgcaaaaactaaacaattagagcaaaaattatccaataaaataaatgac
ttagattctaaaagagagtctattcttaaaaaacaagccgaagttgaaaaaatgcacgtg
tctcaagtaaagcaacttgaggtaatcagcggtatgtccggtgaagatgctaaaaaacaa
ttagtagagtctcttaaagataaggcaaagaccgaagcgatgagtatagtgcaaagtact
atcgaagaggcaaaacttacagcaacacaagaagcacgtaaagttattattaatacaata
caacgcataggtactgaagaggctgtagaaaactgtgtatctgtattcaatcttgagtca
gatgatgtaaaaggtcgtataataggacgtgaaggtcgcaatattagagctattgaagct
gcgactggtgtagagattatagttgatgacacaccagacgcaattattctttcttgtttt
gactcagtacgtagagaggtagctcgtttgtcattacataaattagtgacagatggacgt
attcacccagctagaattgaagaggtagttgcaaaaactagaaaacaaattgatcaagaa
attgctgaggttggaaaacgtactgtgattgatttaggaatacatggtctacatccagag
ttgattaaaatggtaggtagaatgaaatatcgttcttcttatggacaaaacttgttacag
catagtagagaggtagcaaaattatgtggtactatggcagcagagttagggttgaatcct
aaacttgcaaaacgcgctggattactacatgatataggtaaggtgccagaaacagaagat
gaaactcctcacgcaatcttaggtatgaacctagctgaaaagcatggtgagaaaccagaa
gtttgtaatgctataggtgctcaccacgatgaaattgaaatgacatcattactttctcct
atcgtacaggtgtgtgatgctataagcggtgcacgtccaggagctagacgtcaggtgcta
gactcgtacattcagcgattaaaagatcttgaagaaatagcatttggtttcaacggtgtt
gaaaaagcatatgccattcaagcaggacgcgagttacgtgtgattgtagaaagtgaaaaa
gtaagcgatgataaggcagcacagttatcgtttgaaatttcacaaaaaattcaaacagac
atgacttatcctggtcaggttaaagtaactgttataagagaaactagagctgttaatata
gcaaagtaa
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