Neodiprion virginianus: 124297900
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Entry
124297900 CDS
T09046
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nvg
Neodiprion virginianus
Pathway
nvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124297900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124297900
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124297900
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124297900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
124297900
NCBI-ProteinID:
XP_046605234
LinkDB
All DBs
Position
2:5545973..5560355
Genome browser
AA seq
2404 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLNKKNFRESAQEISVLVQWKGLEADRHLLRCLFSHVNFSTG
EQPEPNAKDYYQAQLLTQECINLLSKPSFISNLCYAIDRPLHQQKSLNPSSKFFLNLRKV
LKLTSVQEVAFAIALLHSENPDIQTLALEHIKKQLPELIKNYINSEISNKHHEGGLHDSS
PEVLHLILSQAFHEPNQFGLPIEAKEKFLKNLRRDFPRELVPVVLAPLLYPGDGEIPQAA
IELNMASNPMGFPFQDGNALVEMIMELGYGFTSSVDECRSALAGLGAREITPTAAARVLS
LMARTCSGLDDAGGLQSFWGGSGGNQDSSKEKSSDGSTPTTWNVEVFIQTLKDLQSTLSW
NEIIVKLDHTDFIIKDRQGLNLLITGLRLGLQHLGYPLDMFPVELFYRHWDNVEGQFSLV
QQVLKNPDIFCFADYPYHSVTVDVLKAAPEGDSKEAGTWRSLNVVELLLHMAERGLYGAV
QEIFKWPIQHCPDVLVLALLQINPPLTILRQELLSTLMPIFLGNHPNSAVILHHAWHANN
VTIKPIIMHAMAEWYLRGEYDQTRLSRILDVAQDLKALSMLLNAQSFPFVIDLACLASRR
EYLKLEKWLTDKIRDHGELFVAACVKFLQRRCPHVMGPTMKEDPSTPKATQLPQETLNTI
LACLQVCAGNVSQECSDAIMTMVQNCNLMLSKASLSRPPPVIRHRALEPFNPATLGGQLF
SSSQVDPLGNLSSSLASMGLSSSLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFP
LMPLSAQLHAGPVGTQGPSVVPGGTTIAGLSRLGPPSGIEKARLPETSNLFPDMSQNVSK
EIEDEANSYFQRIYNHPPHPTLSIDEVLEMLKKFQDSGSKRERDVFNCMLRNLFEEYRFF
PQYPDKELHITAQLFGGIIERGLVNTYVALGLALRCVLDALRKPEASKMYYFGIAALDRF
KSRLKEYQKYCEHVRAIQHFSEFPPHLIEYVEYGLQGQEPPTRPQGQVLPKSIAAMLAPA
TIPYKTITTTTVTTTTTQAKPSTTPTTSLSARPSIANATNIDTLLVATDKEEKITAPPES
LQDKTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLD
CLKVPDVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNNPIFHID
IDLKSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPD
LKLNLKFEIEVLCKNLSIDVSELKPAIYLKDPEKLRNLEYQLSHPNKKPEVAANPLPPQP
PAEELVRPTTTGTVVPQQAPPVNTTPSLPTSPPEPRFNYMDISVTGIASQHITINNQLPL
FQAHPQLKQFVRSAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEIRMRTAAR
HMVRNLTAGMAMITCREQVLTSISTNLKQSFVAALMGTTPQQKELAEQAASIVAADNMEL
ACAFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRLKVGG
VTPQQMAVYEEFARNIPGFLPLSERDTQALFMPKPVTEPAATAFAANPAVAVATPQQVAA
YAAAVNNDEVGAMLEKLATEVDLLLAAMGPGVPPPQHAALHALLDSIILTRRSRDTGAAM
ALLKKAVEGLLDGPTISTGVNDGEIMLRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLT
ECREEFRYNFEAVDYLIRSHLLNLPQFDYALAQAMDAGAAMATAFAMQLVQLYLIDERQT
THVTESDLFNTIEILARMAHHRAPPEGISIFRLTSLIESLRANHDPAVLADRAPAGPTAH
IHSGILQVRTRDFDDPPGLMEKTEYLLREWVSMHHNPTHARDPTKAFGMFVHQMNIHGIL
KTDDLITRFFKLSTQMCVDLCYRALGEPNAAPSVVRAKCFHTLDAFVRLVALLVKHSGDT
ANTHTKINLLNKVLGIVAGVLLQDHEMRGTDFQQLPYHRIFVMLFLELCAPEPVLEAVNY
QVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFK
YLAPYLRNAELAKPVTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLIL
SAFPRNMRLPDPFTPNLKVDMLQEIAHAPRVLSNFASMIQPLSFKKELDSYLKARAPVTF
LSELRSNLQVSQEAGMRYNIQLMNALVLYVGTQAISFIRSKGHTPNMSTIAHAAHMDIFQ
NLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERL
IVNRPHPWGLLITFIELIKNPTYNFWKHEFVHCAPEIEKLFESVARSCMVQKQVQPPPEP
EIPE
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcaaatttg
aacaagaaaaattttcgagaaagcgctcaggaaatatcagttttggtgcagtggaagggt
ctggaggcggacagacacttgctgcgctgtttgttctcacatgtcaacttttcaacggga
gagcagccagagcccaacgcaaaagattattatcaagctcagttgctcacccaagagtgc
attaatcttctcagcaagccgtccttcatatcaaacctctgttacgccattgatcgcccc
ttacatcagcaaaaaagcttaaatccgtcatcaaaattttttctcaaccttcgcaaggtt
ctgaaattgacatctgtacaagaagttgccttcgcgatagcattgttgcattctgaaaat
ccagatatccagacattagcattggaacacattaaaaaacagctacctgaattgataaag
aattacataaactcggaaataagcaataaacaccacgaaggaggtctacacgattcgtca
cctgaggttctacatctcatactgtcgcaggcatttcacgaacccaaccagtttggcctg
cctatcgaagcaaaggaaaaatttctcaagaatttaaggcgtgattttccccgtgagctg
gtaccggtggtgctagcaccactcttgtatccaggcgacggggaaattccgcaagcagca
attgaattaaacatggcttccaatccaatgggatttccctttcaggatggaaatgctttg
gtcgagatgattatggaactcggatatgggttcaccagtagcgttgacgaatgccgctcc
gcccttgctggactgggggcccgagaaattacaccaaccgcagctgctcgggtgttatcc
ctcatggctcgtacatgttccggtcttgatgatgctggtggtttacagtcattctgggga
ggttccggtggcaatcaagattccagtaaagagaaatcttctgacggcagtacacctact
acatggaacgtcgaagtgttcattcagactctgaaagatcttcaatctactttatcatgg
aatgagatcatagttaaacttgaccacactgattttataatcaaggacagacaaggcttg
aacctgctaataacaggcctgcgtctaggtcttcagcatctaggatatcctctggatatg
ttccctgttgagttattttaccgacattgggataatgtagaaggtcaattctcattggta
cagcaagttctgaaaaatccggacatattttgttttgctgattacccgtaccattcggta
acagttgatgttctcaaagctgcaccagaaggcgacagcaaggaagccggaacctggcga
tcactgaatgtagtcgaacttctgcttcacatggctgaacgaggtttatacggcgcagtt
caggaaatattcaaatggcctattcaacattgtccggacgttctcgtcctggccctactt
cagatcaatcccccactcacgatactccggcaggaattgctcagcactttgatgccgatt
ttccttggcaatcatccgaattccgctgttattttacaccatgcttggcacgccaacaat
gttacaatcaagccgataataatgcatgccatggccgagtggtatttgcgtggggaatat
gatcaaacaaggctatcgcgaatcctagatgtggctcaggatttgaaggctctttcgatg
cttctgaacgcccaatcttttccttttgttatcgatctggcctgtctagcctcacgaaga
gaatatttgaaactggaaaagtggcttacagataagattagagatcacggagaattgttt
gttgctgcttgcgtaaaattcctacaacgaagatgtccgcacgttatggggcccactatg
aaagaagacccttcaactccgaaggctactcaacttcctcaggaaacactcaatacgatt
cttgcttgcctgcaagtctgcgctggaaatgtgtctcaagagtgttccgatgcgattatg
acaatggttcagaactgcaatctaatgcttagtaaagcaagcctaagcagaccacctcct
gtcattagacacagagcgcttgaaccgttcaatcctgctactttaggaggacagctcttt
tcgtcatcgcaagttgatccattgggaaatctcagctcaagtttagcttctatgggcttg
agctctagtttgggacctcctagcagttctgcttttaatcttcctggggcccttggtcct
ttggtttctgcacctggttcaccctcacgcttaatgggtccatcaccgagcccattccct
ttgatgccgctttccgcccagcttcacgcagggcccgttggaacgcaaggaccatcagtt
gtaccaggtggtacaacgatagcaggattaagccgtcttggtccaccaagtggtattgaa
aaggctagattgccagagacttcgaatttgtttcctgatatgtcgcagaatgtatctaaa
gaaattgaagacgaagcgaacagctattttcaacgcatatacaatcaccctccacatccc
acattgtcgattgacgaagtacttgaaatgttgaaaaaatttcaagattccggtagcaaa
agagagcgtgatgtgttcaactgcatgttgcgcaatttgtttgaagagtaccgtttcttt
ccgcaatatcctgataaggaattgcatataacagctcaattgtttggaggtattattgag
agagggcttgttaacacttatgtcgccttgggattggcgttacgctgtgttcttgacgct
ttgagaaaaccggaggctagtaaaatgtattattttggaatcgctgcattggaccgcttc
aaaagtcggttaaaggaatatcagaagtattgcgaacatgtcagggctatccaacacttc
agtgaattcccaccacatcttatcgagtatgtcgaatatggcctccagggacaagaacct
cccaccagacctcagggtcaagtacttccaaagtcaatagctgccatgctagcaccagct
actattccttacaaaactatcactacaacgactgttacaacaactactacccaagccaaa
ccatctacaactcccactacgtcactctctgccaggccatcaattgcaaatgcgaccaac
atagacacattacttgttgccacggataaggaggagaagattacagcaccaccggaaagt
ttgcaagataaaactgcatttatattcaataatttgagtcagcttaatctgcaacagaaa
tgtgatgaaattcgagagatagttaccgaagagtactggccatggatggctcagtattta
gttatgaaacgtgctagcattgaattgaatttccatgccctttattccaactttcttgac
tgtcttaaagtacccgatgtgaataaaatggtcaccagagaaactttccgaaacatcaag
gtactgctacgaagcgacaaaggaatagcaaacttttctgaccgctctctattgaagaac
ttgggtcattggctgggaatgctgacattaggaagaaacaatccaattttccatattgat
atagatttgaaaagcttacttgtcgaggcgtatcacaaaggtcaacaagaactcttgtat
gttgtgccattcgtagctaaagtattggaaagctgtgcaaaaagccgtgtctttcgtcct
cccaatccctggactatggcaataatgaatgttttggctgagttacatcaggaacctgat
ctaaaactgaatctgaaatttgaaattgaggtgctctgcaagaatctgagtatcgacgta
tccgaattgaagccagccatctatttgaaagatcccgaaaaactgagaaacttggaatac
caattatcacacccgaataagaaaccagaagtcgctgcaaatccgctcccaccacagcct
cctgctgaggaacttgtcagaccaacaacaactggaactgtagtcccacaacaggcacct
cctgtaaatacaacaccttcattgccgactagtccacccgaaccacgattcaattacatg
gatatatcagtgactggtattgcttcacagcacatcactatcaacaaccagctgccactt
ttccaagcacacccacaactcaaacaatttgtgcgttccgctgttgaacgagctattcaa
gagtggattcaccctgtcgtagatagatcaataaaaatagcattgacaacaagtgaacaa
attgtcagaaaagattttgcactcgaccccgaagagatcaggatgcgtactgctgcccgt
catatggtgcgcaatctcactgccggaatggccatgataacgtgccgagaacaggtactc
acttcaatcagcacaaacctgaagcaatcatttgtagctgcactgatgggaactactcca
caacaaaaggagctagctgaacaagcggcgagtatagtggctgctgataacatggaactt
gcgtgcgcatttgtacagaaaacagcgattgaaaaagctattcctgagatggataagaga
ctattaaatgagatagaactacgtaagattgctagacaagaaggaaggaggtactgtgat
cccttagctaaatatcaggcagagagaatgcctgaacaaataagacttaaagtcggagga
gttactccacaacaaatggctgtttatgaggaattcgcaaggaacattccagggtttcta
cctctttccgaacgtgacactcaagctctctttatgcctaagccggtcactgaacctgct
gctacagcattcgcggcaaatccggcagttgcagttgctacacctcagcaagtcgcagca
tatgcagctgctgttaacaatgacgaagttggtgccatgttagaaaaacttgccacagaa
gtagatctacttttggcagctatgggtccaggtgttccgccaccacaacacgctgcgcta
catgcacttctcgattctatcatccttaccagaagatctagggacactggtgctgctatg
gcgctattgaaaaaggctgtagaaggattgctagatggtcccaccatttcaactggtgtt
aatgacggagaaataatgctgcgatacagggaattacatcttcgtatccttaagtgcctt
caagatccacgagcttatggcatgcagtggacaaacaaacatgtaactcgatgtttaacg
gaatgcagagaagagttccgttacaattttgaagctgtcgattacttgataagatctcac
ttgttgaacctaccgcaatttgattacgctctggctcaggcaatggatgctggtgctgcc
atggcgactgcttttgctatgcaactagtgcagctctatctaattgatgagagacaaact
actcatgttacggaatctgacttattcaatacaattgaaattctagctagaatggcacat
catcgagcaccacctgaagggatttcaatattcaggcttacgagtttgatagaatcatta
cgggctaatcatgacccagctgtactggcagacagagccccagctggaccaactgctcac
attcactcagggattctccaggtgagaactcgggatttcgacgatcctcctggactgatg
gaaaagaccgaatacttgttacgagaatgggtatccatgcaccacaatccaacgcacgcc
cgtgatccaacaaaagcattcggaatgtttgtccaccagatgaatattcacggaatatta
aaaactgacgatctcataacacgattcttcaagctcagtacacaaatgtgcgttgatctc
tgctacagagcactgggtgaaccaaatgctgctccttctgtggtgcgtgcgaagtgcttc
catacattggatgcctttgttcgtcttgttgcgcttttggtaaagcattcaggggacact
gcaaatacgcacactaaaatcaacctcctgaacaaggttctgggcattgtcgccggtgtt
cttctgcaagatcatgaaatgcgcggaacggactttcaacagctaccttatcatcgaata
tttgttatgctgttccttgagctgtgtgctcccgaacctgtgcttgaggccgttaattac
caagtactgactgccttctgccacaccctgcacatattacgtccagcaaaggcctcgggc
ttttgttacgcttggttggagctggtttcgcaccgagtatttattggtcgtatgctcgct
attactccacaacaaaaatgctggggcatgtacgctcagttgctcattgatctcttcaag
tatcttgcaccatatctgcgcaatgctgagctagcaaagccagtaactctcttatacaag
gggacgctgcgagtactgttggttttattacatgacttcccagaatttttatgcgactat
cattacggattctgcgatgtgatacccccaaattgtattcaaatgagaaacctcattctc
agtgctttcccgagaaatatgcgcctccccgatccttttaccccgaatttgaaagtcgac
atgttgcaagaaatcgcccatgcaccaagagttctatcgaactttgcctctatgatacaa
ccgcttagtttcaagaaagaattggattcatacttgaaagccagagcccctgttactttc
ctttcagaacttcgcagtaacttgcaggtttcacaggaggctggaatgcgctacaatatt
caattgatgaacgcccttgttctgtatgtcgggacacaggctatatcattcattcgtagc
aaaggacatactcccaacatgtcgacaattgctcatgccgcacacatggatatattccaa
aatctagctgttgatctcgatacagaagggcgttacttattcctaaatgcaattgcaaat
cagttgcgatatcccaacagtcatacgcattacttcagttgtaccttgttgtacctattc
gctgaagctaacactgaagctattcaagaacaaataacacgagtccttcttgaaaggctg
attgtcaacagaccacatccctggggacttctcattacctttatcgaactcattaaaaat
cctacctacaacttctggaagcatgagtttgtccactgtgcaccagaaatcgaaaaatta
ttcgaatcagtggctcgatcgtgtatggtacagaaacaggtccagccacctccagaaccg
gagatcccagagtga
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integrated database retrieval system
