Nicrophorus vespilloides (burying beetle): 108563358
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Entry
108563358 CDS
T04922
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nvl
Nicrophorus vespilloides (burying beetle)
Pathway
nvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108563358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvl03019
]
108563358
Messenger RNA biogenesis [BR:
nvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108563358
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108563358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
108563358
NCBI-ProteinID:
XP_017777501
UniProt:
A0ABM1MSF1
LinkDB
All DBs
Position
Unknown
AA seq
2356 aa
AA seq
DB search
MNLDSLSFTLSQISYLVASINKKNQKQVVADLYKLVDLHGLEADRHLLQCLFSSVDFSET
SSKISAATAHNQVLLDYSSTLLNKPALITSVCYITDNPLNNQKSLKVGPHFFQQLCKCLR
LSPVQEVVFALALLHSSNFDVSSLAQSHLRGCVPSLVQSYIDTEGSGHQQEGGLHETTPE
VLHLILSLIENSPKEVGLSSEVHAALLKALQRDFPKDFVPIVFAPLVYSQQCELAPDIMG
SEGPGLSGGMLDTPLADLVSEMGYGFTSSLEECRNNLVKLKPRDITPAHIARVVSVMSQT
LTGLDQSQMKGGPEIRNTWNIDVFVQALKEVVPNLTWSNVILELDHPDFLIKDRQSLIFL
ITLLRLGLQTSGFHSETFPIDHIYRRWSNIEGQLSLVSNILKNPDVFCFADYPCNPVIVD
VLKTPPELDGKDLANWRSMNVIELLLTISECGWYTQVQELFKYPMQACPDVLVLALLQIN
GPITMLRQELLKALIPIFLGNHPNSAIILHSAWHTQTLNIKTIIMHSMAEWYARGDCDQA
RLSRILDVAQDLKALSMLLNVQSYPFIIDLACLASRREYLKLEKWLTDKVREHGDTFVSA
CIKFLHRRCPQITGKLDELKSQMALPSETLTTMILCIQSCMHTYNMSQECQEAILTMYNN
CTLLIKNRQAQQPTASMLRTHRGMDTGPFNPTNIGQLYNTNSVDSIGNLGTNLANMSLGG
VTNSAFNFSTGLGQLVQSPGSPSRILGTNNNFPIIPLGHQGPVGTGASHVPNAMNALNRI
TPNPGLEKPRIQQDNNLFPEIAPNVSKDIEDEANSYFQRIYNHPPHPTLSIDEVLEMLKR
FQDSNVKREREVFNCMLRNLFEEYRFFPQYPEKELHITAQLFGGIIERGLVTSYMTLGLA
LRFVLEALRKPEGSKMYFFGIAALDRFKTRLKDYHKYCEHVRAIPHFNEFPPHLREYVEY
GLQSMEPPSAPQGPVLPATLAAMLGPASAQGFKSTSATPTAPKASTAAVASLGSRPSIAN
ATNIDTLLVATEQEEKITSPPESLQDKIAFIFNNLSQINLQKKCDELRDIVSEEYWAWIS
QYLVMKRASIELNFHVLYSNFLDVLKVPDVNRMVTRETFRNIKVLLRSDKVIANFSDRSL
LKNLGHWLGMMTLARNKPILQIDIDLKSLLIEAYNRGQQELLYIVPFIAKILESCAKSKV
FKPPNPWTIAIMNVLAEMHQEPDLKLNLKFEIEVLCKTLDIDISQLKPSNILKDPESMRK
IEYQLQTQAGKKDVVQVTSQMALQTSNLNESDMLSGQSTSTPPVPQNNSTTPTSSVAAPE
PRFSYMDIQLTGTTAIQTHVTINQNIVLFQSHPQLKSLVKPSIERAVQEWIIPVADRSIK
IALQTCEQIVRKDFALDPDENRIRTASHYMVRNLTAGMAMITCRDQLLASINSQMKIALQ
SALISATSQQKEMMEQAANIIAQDNMELACAFIQKTAIEKAIPEIDKRLISEFELRKISR
QDGRRYCDAIALTYQAERMPEPIRLKVGGITSTQMTVYEEFARNIPGFLPISDRENNLFI
NKPAVNLEVAVQHPSTPFQVAQASDEMASLCEKLALEVDQFIVATSGQSNYAVMNNTMMM
IRDCLMYTMHNRELGSSIAIVQKCVEGLQDTVVQHNEHDVILKFREITIRILKSLQDPRA
FGQQWVIKQVTRFVTEFRDDVRSNEAAIETLIRAGLVNMQQFDLSLAQFMENGPNYRALN
LGTTLVQNLVIDDRSSNIGESDFYNTIDMMIKINQLIRQPPETLTNILDMLKQHHEQGVF
LGDRTTGGPIVHIHNGILQVRSAPNYEDPPGLVEKTDFLIRDWISVYNSQPTGRDSTKAF
SLFVHQMNCQGILKTDDLITRFFRLSTQLCVESVYRNMSDQNLTGNHLRVKCFNTLDAFV
RLVALLVKHSGDSTNSTTKIHLLNKVLGIVAGCLLQDHEQRGTEFQQFPYHRIFIMLFLE
LNVPEPVLETINMHVLTAYCHTLHILRPSKAAGFCYAWLELVSHRVFMGRMLASTPQQKG
WAMYAQLLIDLFKYLAPFLRNAELAKPVTMLYKGTLRVLLVLLHDFPEFLCDYHYGFCDV
IPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDILQEIAFGPRVLNNFSSMITPITFKKD
LDSYLKLRAPVTFLSELRSNLQVSNEPGMRYNIPLMNALVLYVGTQAIGFIRGKTLTPNM
QTIAHSSHMDIFQNLAVDLDTEGRYLFLNSIANQLRYPNSHTHYFSCTLLYLFAEANTEA
IQEQITRVLLERLIVNRPHPWGLLITFIELIKNPNYKFWNHEFVHCASEIEKLFESVARS
CFVQKTAIQAEGELQE
NT seq
7071 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttagttgcttctatt
aacaaaaagaaccaaaagcaagtcgtcgccgatttatataagttggtggatctgcatggg
ctagaagccgatcgtcacttgctccaatgcctcttttcgtcggtggacttcagtgaaacg
tccagcaagattagtgcagcaactgctcacaatcaggtgttattagactattcctcaact
cttctaaataaaccagctctaataacgtctgtctgttacattacagataatccattaaac
aatcaaaagagcctgaaagttggacctcatttttttcaacaactgtgtaagtgccttcgc
ctctcacctgtccaggaagtagtgttcgcacttgccttactccattcgtccaactttgac
gtgtcgagtttggcgcagtcacatttgcgtggctgcgtgcccagtctcgtccaatcgtac
atcgataccgaaggtagcggtcaccaacaagagggcggtcttcatgagaccacgcccgag
gtcttacatctgatcttgtccttgattgaaaattcgcccaaggaggtcggactttctagt
gaagtacacgccgccttgctcaaagcgttacaacgtgactttcctaaggacttcgtacca
atcgtcttcgcaccgttagtatattctcagcagtgtgagcttgcgcctgacatcatgggt
tcggaaggccccggtttatccgggggtatgctcgatacaccattggccgatctagtatca
gaaatgggctatggattcacttcatcattggaagaatgcagaaataatcttgtgaagttg
aaacctagagacataacacccgctcatatagcgagggttgtatctgtgatgagccagacg
ttaaccggtttggaccaatcacagatgaaaggaggaccagaaataagaaatacgtggaat
atcgatgtgtttgtgcaggctcttaaggaagtagtgcctaacttgacgtggagtaatgtg
attctagaattagaccacccggactttcttataaaagacagacaaagtttaatttttctt
atcaccctattacggctaggcttgcaaacatctggtttccattctgaaacctttccaatt
gatcatatataccgacgctggtcaaacattgaaggacaactaagtttggtatcgaacatc
ttgaaaaacccagatgtgttttgttttgcagattatccttgcaatccggtgattgtcgat
gttctgaaaactcctccagagctcgatggcaaagatcttgcaaattggcgttcgatgaat
gtcatcgagttactgctgactatttccgaatgtggctggtacacacaggtgcaagaacta
tttaaatatcctatgcaagcttgtcccgatgtactcgttcttgctctgcttcaaataaac
ggacccatcaccatgctaaggcaagagcttttgaaagcattgatacctatatttttgggt
aatcatcccaactctgcaataatccttcacagtgcttggcacacccagacattaaatata
aaaacgattattatgcactcaatggctgaatggtatgccagaggagactgtgatcaagct
agattgtcacgtattctggacgtagcacaagatctcaaagcgctatcaatgttgctgaac
gtgcaatcgtatccattcatcattgatttggcgtgtcttgcatcgcgcagggaatatttg
aaattggagaaatggctgacagataaagtacgagaacatggagacacttttgtgtcggct
tgtatcaagtttttgcatagacgatgtccacaaataactggaaaacttgatgaattgaaa
tcgcaaatggctttgcccagcgaaacgctcaccaccatgattttgtgtatacagtcttgc
atgcatacatataatatgagtcaggaatgccaagaagcaattttgacaatgtacaacaac
tgtacactattaattaagaatagacaagctcaacaaccaacagcatctatgttgagaact
caccggggaatggacaccggacctttcaatccaacgaacataggtcaattgtacaacacc
aattccgttgattcgattggtaacctcggaaccaatttggctaatatgagtctaggtggt
gtgacaaattcggcatttaatttttcgaccggattaggacagttagttcaatctccaggt
tcaccgtcgcgcatcttaggtacaaacaacaatttcccaattattccattgggacatcag
ggacctgtaggaactggtgcttcccatgtacccaatgccatgaatgctctaaacagaata
acgccaaaccctggattagagaaaccacgaattcaacaagataataatttattccccgag
attgcacctaatgtttccaaggacattgaagatgaagccaatagttattttcaaagaatt
tacaatcatccaccgcatcctacgctatctattgacgaagttctagaaatgctgaagaga
ttccaggattccaatgttaaacgagaaagagaagttttcaattgcatgctacgtaattta
tttgaagaatatcgttttttcccacaatatccggagaaagagttgcacattacagctcaa
ttatttggtggtatcatagaaagggggctcgtcactagttacatgacgttaggattggct
cttcgtttcgtactggaggcactacgaaagccagagggttcaaaaatgtacttctttggt
attgcagctctagatagatttaagaccagactgaaagattaccacaagtactgcgagcat
gttcgggcgatacctcattttaatgaatttccaccacatttgcgagagtatgttgaatat
ggattgcagagcatggaacctccttctgctcctcaaggaccggtgttgccggcgactctg
gctgctatgctaggaccagcttctgcccaaggattcaagagcacttcagcaactcccacc
gctcctaaggcgagtacagcggccgttgcaagtttgggtagtcgaccatccattgcaaat
gcaacaaatattgacaccttgctagtggcgacagaacaagaagagaaaatcacttcacct
cccgagagtcttcaggacaaaattgcgtttattttcaacaatttaagccagattaattta
cagaaaaaatgtgatgaattacgtgatattgtttccgaagaatattgggcttggatttca
caatatttagtaatgaaacgagcctctatcgaattaaatttccatgtattatattccaac
tttttggatgtgctaaaagttcccgacgttaatcgaatggtaacaagggaaacgtttaga
aatatcaaagtgcttttaagatcagataaggttatcgccaatttctcagataggtctttg
ctaaaaaatttaggccattggcttggtatgatgaccttagcacgcaacaaacctatttta
caaatagacatagatctgaagagtcttttaattgaagcgtataacagaggtcaacaagag
cttctgtatatagttcctttcattgctaaaatattggagtcatgtgcaaaaagcaaagtg
tttaaaccaccgaacccttggacaattgctattatgaacgtgctcgctgaaatgcatcaa
gagccagatttaaaattgaatctgaaattcgaaattgaagtactatgtaaaacactcgat
attgacattagtcagcttaaaccttcgaacattttgaaagatccagaatccatgagaaaa
attgaatatcagcttcagacgcaagcgggcaagaaggatgtcgttcaagtaacttcgcag
atggctttgcaaacatcgaatctgaacgaatctgatatgctatccggacaatcgacatcc
acaccgcctgtaccacaaaacaacagcactacacccacatcgtcagttgcagccccggaa
ccaagatttagttacatggacatacagttgactggaacaactgctatacagacgcacgtg
actatcaaccaaaatattgttttattccaaagtcatccgcaattgaaatcattggtaaaa
ccatccattgaaagagccgttcaagaatggattattccagttgcagacagatccattaaa
attgcattgcagacgtgcgaacagattgtaagaaaagattttgctctcgatccagatgaa
aatagaatacgtaccgcttcgcattatatggtaagaaatctgactgctggaatggcgatg
attacgtgccgcgatcagttattggcatccattaattcacaaatgaagatagccctccaa
agtgcacttattagcgcaacttcacaacaaaaagaaatgatggaacaagcagctaatatt
attgctcaagataatatggaattggcatgtgctttcattcaaaaaacagcaattgagaaa
gcaattcccgaaattgacaaacgtttgataagtgaatttgagttgagaaaaatatccagg
caagatggaagacgttactgcgacgctatagctttaacataccaagccgagagaatgcca
gaacccatacgccttaaagtcggcggtataacgagcactcagatgactgtttacgaagaa
tttgcacgcaatattccaggattcctgccaatttcagatcgtgaaaataacctctttatt
aacaaacctgccgtcaacttggaggttgctgtacagcatccatcaacacccttccaggtt
gcacaggcttctgatgaaatggcttcactttgtgaaaaattagcacttgaagtcgaccaa
tttattgttgccacaagcggacaatccaattatgccgtcatgaataacactatgatgatg
attcgtgattgtcttatgtacaccatgcataatagggaattaggatcatcaatcgcaatt
gttcaaaagtgtgttgaaggcttacaagatactgtggttcaacacaacgaacatgacgta
attttgaaattccgcgaaattacaatcagaatcttgaaatccttgcaagatccaagggca
ttcggacaacagtgggtaattaaacaagtgaccagatttgttactgaatttcgagatgat
gtccgaagtaacgaagctgcaatcgagacactaatcagggccggattagttaatatgcag
cagtttgatctatctttagctcaattcatggaaaatggaccgaattacagagctttaaat
cttggcactaccctcgtgcagaatttggttatcgatgaccgttccagtaacatcggcgaa
tctgatttctataacacgattgatatgatgattaaaattaatcaattaattcgacaaccg
ccagagacattgacgaacattttggatatgttgaaacaacatcacgaacaaggcgttttt
ctcggagatcgcactaccggtggtccaatagtacacattcataatggaattttacaagtt
cgttctgcgccaaattacgaggacccacctggattagtagaaaagactgatttcctaata
cgcgattggatttcggtttataattctcaaccgactggtcgcgattcgacaaaagcattc
agtttgtttgtacaccaaatgaattgtcaaggcatccttaaaactgacgatctgattacg
agattcttccggctgtccacgcaattgtgcgtcgagtctgtatatagaaatatgagtgac
caaaatctgactggaaatcacttgagagttaagtgctttaataccttggatgcctttgtg
cgtctagtcgcacttctggtgaaacattccggggacagtaccaatagtacaacaaaaata
catttgctcaataaagtacttggcatagtcgctggatgtctgcttcaggatcatgagcag
agaggaaccgaattccaacagtttccatatcaccgcatattcatcatgcttttcttggag
ttgaatgttccagaaccagtgttggaaactatcaatatgcatgtgctgactgcatattgt
catactttgcacattttgagaccttcgaaagctgcagggttctgttacgcttggctggaa
ttagtatcacatcgagtatttatgggcaggatgctagcttcgacgccccaacaaaagggt
tgggctatgtacgctcaattacttattgatctattcaagtatttggctccattcttacgc
aacgctgagcttgccaaacccgtcaccatgctgtacaaaggaactttaagggtgctacta
gttttattacacgatttcccagagtttttgtgtgattatcattatggtttctgcgatgtg
attccaccgaactgcattcagatgcgcaacttgatattgtcggcatttccaagaaacatg
aggcttcccgatccattcactccgaaccttaaagttgatattttgcaagagattgctttt
gggccaagagttttgaataacttttcatctatgattactccaatcacatttaaaaaagac
ctagattcttacttgaaactaagggctccagttacattcttatctgaattgagaagtaat
ttacaagtgtccaatgagccaggaatgaggtataatatccctttgatgaacgcgctggtt
ctctatgtcggcacccaagcgatcggtttcattaggggtaagactcttactccgaacatg
caaaccattgcccacagttcacacatggacatcttccaaaatcttgctgtcgatctggat
accgagggaagatatctgtttctgaattcgattgcgaaccaactgcggtaccccaacagt
catacccattatttctcatgcacactgctttacctattcgctgaagcaaatactgaagct
attcaagaacagattaccagggttctcctcgaaagactcatcgtgaatagaccgcatcca
tggggacttttaatcacattcattgagctgatcaagaatcctaactataaattctggaat
catgagtttgtccattgcgcttcagaaatcgaaaaattatttgaatctgtggcgagatcg
tgcttcgtccagaaaactgcgatccaagctgaaggagagctgcaagagtga
DBGET
integrated database retrieval system
