Neogale vison (American mink): 122908954
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Entry
122908954 CDS
T08764
Symbol
COL6A5
Name
(RefSeq) collagen alpha-5(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
nvs
Neogale vison (American mink)
Pathway
nvs04151
PI3K-Akt signaling pathway
nvs04510
Focal adhesion
nvs04512
ECM-receptor interaction
nvs04518
Integrin signaling
nvs04820
Cytoskeleton in muscle cells
nvs04974
Protein digestion and absorption
nvs05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122908954 (COL6A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122908954 (COL6A5)
04518 Integrin signaling
122908954 (COL6A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122908954 (COL6A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122908954 (COL6A5)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
122908954 (COL6A5)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
122908954 (COL6A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nvs04147
]
122908954 (COL6A5)
00536 Glycosaminoglycan binding proteins [BR:
nvs00536
]
122908954 (COL6A5)
Exosome [BR:
nvs04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122908954 (COL6A5)
Glycosaminoglycan binding proteins [BR:
nvs00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122908954 (COL6A5)
Hyaluronan
Extracellular matrix or blood plasma proteins
122908954 (COL6A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_CoxE
Copine
vWA_SIBA-E
Crystall_2
Motif
Other DBs
NCBI-GeneID:
122908954
NCBI-ProteinID:
XP_044108331
LinkDB
All DBs
Position
6:complement(132960882..133057445)
Genome browser
AA seq
2110 aa
AA seq
DB search
MDVSYNCTRLGLMSYSDRAKIISFLNSSTTQYEFQEQIQKLSIQAGKSNAGAAIEKMRLE
AFSESSGSRRAQGVPQIAVFVTHRPSTDEVRDVAIQLRLQDVTVFGMNIQGANDVQLEEI
VSYPPRQMVSKLESYSDLEAYGKKFQKKLQNEIWSQISTRAEGMDLDRTGCMDTKEADIY
FLIDGSTSIQKKHFGQIKEFMLAVTGMFSIGPDKVQVGAVQYSHKMKVEFYINDSSNNVN
LRNAILNIEQLKGRTHTGEALDFVLSIIKEDRKHRTRQVPCYLIVLTDGRSADEVLEPAE
RVRAEQVTIHAVGIGEANKAQLQQIAGGEERVSFGQNFDALRSIKDEVVHRICKEKGCED
MKADIMFLVDSSGSIGHDNFGKMKTFMKNLLAKIQVGPDRTQIGVIQFSDQTQEEFQLNK
YFTQNEISDSIDRMSLINQNTLTGNALTSIDEYFTPAKGARAMVKKFLILITDGEAQDPV
RDPAKALRDKGVVIFSVGVYGANRTQLEEISGDGNLVFQVEKFDDLKTIESKLIFRVCAL
HDCKNIKVLDIVFVLDHSGSINTEEQESMMGLTIHLVNKADVGSARVRIGALKYSEYPEV
LFHLGKYSNRSAVIEHLRRRRDTGGRTFTARALDHTNLMFTEEHGSRIQQNVKQMLIIIT
DGESDDRNRLNDTALKLRNKGIDIYAVGVGEANQLELEAMAGNKNNTFHVDNFNKLKDLY
LPLQERMCTSALEPCDIQEADMVFFFDGSDMVSHSEFATMTTFVSDLIDNFNLQNQRIKI
GLAQFGSGFQKIIELKNSLTIPKLKTQIQTITKSNGFPRIDLALKKVKVMFDPSSGGRRN
AGVLQTLVVITSRDPYYNVADEVKVLRNLGICVLVWGIGDVHKEQLLPMTGDSRKIITLK
DFNTLTDVNIKKRMVREICQSCGTTNCFMDIVVGFDISTHLLGQPLFYGHPLLESYLPSI
LEDITSIGRVSCGAGTEVQVNVAFKVNKITAKFQLYQRAIFDSLRQVSVDGPTHLNAQFL
QSLWETFNDRAKSNGQVLLIFSDGLGGESEIMLEDQSDRLRAAGLDALLVVSLNTTEHDE
FSSFEFGKGFDYRTHLTIGMRELGKMLSQYLGNIAEKTCCCTLCKCLGDPGPRGSRGLQA
TKGFAGLKGSRGHRGDDGDPGRRGESGPPGDKGIAGCPGEHGQKGIRGFSGSKGEQGEDG
VAGLDGEEGFRGFPGEKGEKGDPGSQGSPGSRGPPGEYGEKGFPGDSGNPGQNSNIKGQK
GSKGEQGRQGRTGQKGTPGSPNSRGNRGREGQRGPPGASGEPGNRGPQGVPGTDGLQGPQ
GLDGNPGRKGEKGSEGHKGPQGSSGPAGAKGNIGNPGPSGKKGEPGILGDPGPMGQVGQR
GRQGDYGIPGYGQMGRKGVKGSRGFSGDMGQKGAVGDRGIPGGPGPKGFRGLTLTVGLKG
EQGPPGPPGPPGQRGMKGMAGKPVYSQCDLIQFLRDHSPCWTEKCPVYPTELVFALDQSY
DISEQRFDEMREVIKSIVEGLNIRESNCPVGARVVVVSYDSGTSYLIRGSDYRNKKQLLQ
LISQLKYRTPTEDRDIGNAMRFVARNIFKRTHAGANVRKVAVFFSNGQVASQSSIITATM
EFNALDISPAVFAFNERTFLEAFEFDDTGTFQVIPVSPNESLEKFRRCTLCYDKCFPNAC
IKEIFLPENSYMDAAFLLDNPRTIANDEFNAMKTLMSSMIDNFNIASDPRISDFGDRIAL
LSYSPWDNSRRKKAVVKAEFGFTTYNSGVLIKRHIQSSLQQLKGEATIGHTLLWAVENLF
PQTPNLRKHKVIFVISAGEYHERKEFLKKVALRAKCQGYVIFVISMGSAYKEDMEELASY
PLDHHLIQLGRIHKPELDYITKFLKPFVYSVRRGFNEYPPPELENACRLISEEASQNSDL
LFTPEPLDISSGENSFTGQELSAGKDSSFVLEDIGSDSLVYIPSHMLMPQELKITHKKGH
NSKEIASLTSGAINKYPPADLRPKCVNITSPNPENVGSGNNAFHIPEVYKIETGNSELFD
EFGSQEQHSFVLGISPSNGSETATDLIQKLYLLFSTGELLVNNEKEAQSEEMPALADGKQ
QDKKDGEDSR
NT seq
6333 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgagttacaattgcacgcgccttggtcttatgagttacagtgatagagccaag
attatttcctttctaaattcaagcacaacccagtatgagtttcaggagcaaatccaaaag
ctttctatccaggctgggaaatccaatgctggggctgccattgagaagatgaggctagaa
gccttctcagagtcaagtggcagcagaagggcacagggagtgcctcagatcgcagtcttt
gtcacccacagaccatcgactgatgaggtgcgcgacgtggcgatacagcttcggctgcag
gatgtgactgtgtttggcatgaatattcaaggagctaatgacgtccagttagaagaaata
gtgtcttaccctccaaggcaaatggtttccaagcttgagtcctactcagacttggaagct
tacggtaaaaaattccagaaaaaactccagaatgaaatttggtcccaaatttctactcgt
gctgagggaatggaccttgacagaactggctgtatggatacgaaagaggctgatatctat
ttcctcattgatggctcaaccagcatacagaagaaacactttggacaaatcaaggaattt
atgctggctgtgacaggaatgttcagcattggcccagacaaagtccaagtcggagcggtg
cagtattcacataagatgaaagtggagttttatatcaatgacagttctaataatgtgaac
ttaagaaatgctattttgaacatcgagcaactcaaaggcaggacccatactggggaggcc
ctggatttcgtgctgtcaataataaaagaggataggaagcataggacacgccaggttccc
tgttacctcattgtgctgactgacgggaggtccgcagatgaagtcctagaacctgcagag
agagtaagggctgagcaagtcaccattcatgcagttggcatcggggaggctaacaaagca
caactccaacaaattgctgggggagaagaaagggttagctttgggcagaactttgatgct
ttaagaagcataaaagatgaagttgttcacaggatctgcaaagaaaaaggatgtgaagac
atgaaggctgacatcatgtttctggtggacagttctggcagtataggacatgacaatttt
gggaaaatgaaaactttcatgaaaaacctattagccaagattcaggttggtccagataga
actcagattggtgtcattcagttcagcgatcaaactcaagaagaattccaacttaataaa
tactttacacaaaatgaaatttctgattcaatagacagaatgtctctcatcaaccaaaac
actttgaccggaaatgcactgacttctatagatgaatactttacccctgccaagggggcc
cgtgctatggtcaaaaagtttcttatcctcatcacggatggagaagcgcaagatcctgtg
agagaccctgctaaagctcttcgggacaaaggtgtagttatcttctccgtgggggtgtat
ggcgccaataggacacagctggaggagatcagtggggatggcaacttggtcttccaggtt
gagaaatttgatgatctgaagacaatagaaagcaaactcatttttcgtgtttgtgctctc
catgattgcaaaaatattaaagtgttggacattgtgtttgtgctggaccattcaggcagc
ataaatacagaagagcaagaaagcatgatgggtctaactatccatttggtgaataaagca
gatgttggcagtgcccgagttcggattggagctctcaaatactcagaatatcctgaggtt
cttttccaccttgggaaatactcaaacagatctgcagtcattgaacacctgaggaggcgc
agggacactggagggcgtacctttactgccagggctcttgatcacacaaacctaatgttc
acggaagaacatggcagccgcatccagcaaaatgtgaaacagatgctgatcatcatcacc
gatggcgagtctgatgaccgaaatcggctcaatgacacagcactgaaattgagaaacaaa
ggcatcgatatctacgcagtgggtgtaggagaggccaaccaacttgaacttgaggctatg
gcagggaataaaaacaatactttccatgtagataatttcaacaaactgaaagatctttac
ctgcctctgcaagaaagaatgtgtaccagtgcccttgagccgtgtgacattcaagaagcc
gatatggttttcttttttgatggctctgacatggtctcccactcagagtttgctaccatg
acaacttttgtgtcagacttaattgataattttaaccttcagaaccagagaataaaaatt
ggcttggctcaatttgggagtggcttccagaaaattattgagttgaaaaactctctgaca
ataccgaagttgaagactcaaattcaaaccatcactaagagtaacgggtttccgcgaatt
gacctggcccttaaaaaagtgaaagtcatgttcgatccatcttctggtgggaggagaaat
gctggtgttcttcaaactttggttgtcatcacatccagggatccctactacaatgtggct
gatgaagtgaaagtcctgagaaacctcggaatttgtgtcctggtttggggcataggggat
gttcataaggagcaacttctgccaatgacaggagattctagaaaaataatcaccctcaaa
gactttaatacattaacagatgtgaatataaaaaaaagaatggttcgtgaaatctgccag
agctgtgggaccaccaattgctttatggacatagtggtcgggtttgacatttccactcac
ctgctggggcagccattgttctatggccaccccctgctggaatcctacctcccaagcatc
ttagaggacatcacctccatcgggagggtcagctgtggggcaggcacagaggtgcaggtg
aacgtggccttcaaggtgaacaaaatcactgccaagttccaactctaccagagagcaata
tttgacagcctgcggcaagtcagtgtcgatgggccaactcatctgaatgcacagttcctg
cagtcgctgtgggagacctttaatgatagagctaaatccaatggacaggttctactcatc
ttttcagatggtcttgggggtgaaagcgagataatgcttgaagatcaatcagacaggctc
agagcagcaggacttgatgctttgctggtggtgtccctaaatacgacggaacacgatgag
ttttccagctttgaatttggaaagggatttgattacaggactcacctgaccattggcatg
agagagctgggcaagatgctgtcacagtacctgggaaacattgcagagaagacttgctgc
tgcacattgtgcaagtgtttgggggatccaggtcctcgtggatcccgaggactgcaagcc
acgaagggttttgcaggtctgaaaggcagcagaggacacaggggagacgacggagacccc
ggaagacgaggagaatctggacccccaggagataaagggattgcaggatgtccaggggag
catggtcaaaagggaatcagaggattttctggaagtaagggagaacaaggagaggatggg
gttgccggactggatggggaagagggctttcgtggatttcctggggaaaaaggagaaaaa
ggtgatccaggatctcagggcagcccgggttccagaggtccccctggggaatatggggag
aagggcttcccaggagattctggtaatccaggacaaaacagtaacatcaagggacaaaag
ggctccaaaggagaacaaggaagacaaggtagaactggacagaaaggaacaccaggcagt
cctaattccagaggaaataggggaagggaaggccaacgggggcccccaggtgcctcgggg
gagccgggaaatcgtggacctcaaggtgttccgggaaccgacggattacaaggcccacag
gggttagatggaaatcctggcagaaaaggagagaagggaagcgaggggcataaaggacca
cagggctcttccgggccagcaggagctaaagggaacatcggaaatcctgggccttcaggg
aaaaaaggagaacctggaattcttggagatccagggccaatggggcaagtcggacagaga
ggaagacagggggattacggcatcccaggctatggtcaaatgggacgaaaaggagtaaag
ggctcaagaggattctctggagatatgggtcaaaagggtgctgtcggtgatcgtggaatt
cctgggggccctggacccaaaggatttaggggattaacactcactgtaggcctgaaaggt
gaacagggacctccaggacccccgggccctcctggacagagaggcatgaaaggcatggca
gggaagcctgtatattcccaatgtgatctgatccagttcttgagggaccatagtccttgc
tggacagaaaagtgcccagtgtacccaacagagctggtatttgccctggaccagtcctac
gacatctccgaacagagatttgatgaaatgagggaagtcatcaaatccattgttgaaggc
cttaacatcagggaaagtaactgccccgtgggagccagagttgttgtagtttcctatgat
tcgggcaccagctacctcatccgtgggtcagactaccgtaacaagaagcagctcctccag
cttatttcccagctgaaatatcgaacccccacagaagaccgagacattggtaatgcaatg
agatttgtggcccggaacattttcaagcggacacacgcaggagccaatgtgaggaaagtc
gctgtgtttttcagcaacgggcaagtggccagtcagtcttccatcatcacggccactatg
gagttcaatgccctagatatcagcccagcagtctttgcttttaatgaaaggactttcctt
gaggcttttgagtttgatgacactggaacatttcaggtgatcccagtttctccaaatgag
tcattagaaaaatttcgacgttgtactctttgctacgataaatgttttccaaatgcttgc
atcaaagagatttttttacctgaaaattcatacatggatgcagccttcctcttagacaat
cctcggactatagcaaatgatgagtttaatgctatgaaaaccttgatgagctccatgatt
gacaacttcaacattgcctcagaccctagaatctcagactttggtgataggattgcccta
ttgagctattctccttgggataattctaggagaaagaaggctgtggtaaaagcagagttt
ggatttacaacttataacagtggagtcctaataaagaggcacatccagtcttccctccag
cagcttaaaggagaagctaccattggccataccctactgtgggctgtggagaacctcttc
ccacaaacaccaaacttaagaaaacacaaggtcatttttgttatctcagctggagaatat
catgagagaaaggaattcttaaagaaggtggctctgagggccaagtgccaaggctatgtc
atatttgtgatttccatgggctctgcatataaggaggacatggaggagttagccagctac
ccacttgatcatcatctgatacagcttgggagaattcataaaccagaactggattatatt
acaaagtttctaaagccatttgtttattcagtcagacgaggattcaatgagtacccccca
ccagagcttgagaatgcctgcagactcatctcagaagaagcttctcaaaatagtgatctc
ctatttactcctgagccacttgatatttcttcaggagagaacagcttcactggccaggaa
ttaagtgctggaaaagactcttcctttgtgttggaggacattggaagtgattctttggtc
tacataccaagtcatatgcttatgccacaagaattaaagatcacacacaagaaaggtcac
aattctaaagaaattgcaagtttaacttctggtgccatcaacaaatatccccctgcagat
ctgagacccaagtgtgttaacatcacctctcccaacccagagaatgttggctcaggaaac
aatgcattccatattcctgaggtgtataaaatagagacaggaaacagtgagctgtttgat
gaatttggttcccaggagcagcattcatttgtattagggatcagtcctagtaatggttct
gagactgctactgatttgatccagaagttatacctgctcttttcaactggagaactgctg
gtgaacaatgagaaagaggcacaatcagaagaaatgccagctctagcagatggtaaacaa
caagataaaaaagatggtgaggactcaagatga
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integrated database retrieval system
