Neisseria wadsworthii: H3L96_01435
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Entry
H3L96_01435 CDS
T07067
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nwd
Neisseria wadsworthii
Pathway
nwd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nwd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H3L96_01435 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwd03021
]
H3L96_01435 (rpoB)
03400 DNA repair and recombination proteins [BR:
nwd03400
]
H3L96_01435 (rpoB)
Enzymes [BR:
nwd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H3L96_01435 (rpoB)
Transcription machinery [BR:
nwd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H3L96_01435 (rpoB)
DNA repair and recombination proteins [BR:
nwd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H3L96_01435 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DUF6670
Motif
Other DBs
NCBI-ProteinID:
QMT35952
LinkDB
All DBs
Position
complement(284073..288251)
Genome browser
AA seq
1392 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRANVLNVPFLLATQLDSYSKFLQQEKPFDKRSDNGLQAAFNSI
FPIVSHNGYARLEFVHYILGEPLFDIAECQLRGITYAAPLRARIRLVILDKESSKPAIKE
VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDTFYDKETFYLSKNG
IETDLVPTRLKGETAKLDIVDANGTVLVNAGKRITAKNIRDIEKSGLKRLAIEPDSLLGK
ILAKDVIVPDTGEVLAVANDEITEELLAQLDIHGVTNLETLYINELDQGGYISATLSTDE
TVDQQAARVAIYRMMRPGEPPTEEAVELLFNRLFFNEDSYDLSRVGRMKFNTRTYEQKLT
DVQKASWYGRLINETFVGAADKGGYVLSVEDIVVSIATLVELRNGHGEVDDIDHLGNRRV
RSVGELTENQFRSGLSRVERAVKERLNQAESENLMPTDLINAKPVSAAIKEFFGSSQLSQ
FMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN
SLSVYARTNEYGFLETPYRRVIDGKVTNEIDYLSAIEEGRYVIAQANAELDEEGNLTGDL
ITCREKGETIMATADRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL
RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRIVVRVHDDEATAGEVGVDIYNL
VKFTRSNQSTNINQRPVVKAGDVLQRGDVVADGASTDLGELALGQNMTIAFMPWNGYNYE
DSILISEKVAADDRYTSIHIEELNVVARDTKLGAEEITRDIPNLSERMQNRLDESGIVYI
GAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV
FTREGIQRDKRAQSIIDAELKRYRQDLGDQLRIFDNDAFDRIERMLVGQKANGGPMKLAK
GSEITAEYLASLPSKHDWFDIRPVDEDLAKQLELIKLSLQQKREESEVLYEIKKKKMTQG
DELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLAEQRKVGEIREFLNRLYNGSGKQENLE
ELSDDEILALAENLKEGATFASPVFDGAKEAEIYEMLDLAYPSDDPEVQKMGFNDSKTQI
TLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRF
GEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKMYENIVKGEHKIDAGMPESFNVLVKEI
RSLGLDIDLERY
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgagctattcgtttactgaaaagaagcgtattcgcaagagttttgcgaagcgtgcgaat
gtcttgaatgtaccatttttgttggcaacacaattggattcttattctaagtttttgcag
caagaaaaaccttttgataaacgtagtgataatggcctgcaagctgcatttaattctatt
tttccaattgttagtcacaatggttatgctcgccttgaatttgtgcactacattttaggt
gagcctctttttgatattgctgaatgtcaattgcgtggtattacttatgcagctccttta
cgtgcccgtatcagattagtaattttggataaagaatcttccaagcctgcaataaaagaa
gtacgtgaaaatgaagtatatatgggtgaaatcccactgatgacacctagcggctccttt
gtaatcaatggaactgagcgagttatcgtatctcagcttcaccgatcccccggcgtattt
tttgagcacgaccgcggtaaaactcattcttctggtaagttattgttttctgcccgtgtg
attccttatcgtgggtcatggttggattttgaatttgatccgaaagatttgttgtatttt
cgtattgatcgccgacggaaaatgccagtaactatccttttgaaggctttaggttacaat
aatgagcaaattttagacactttttacgataaagaaactttttatttgtctaaaaacggt
atcgaaacagacttagtacctacccgtttaaagggtgaaacagccaagttagatatcgtt
gatgcgaatggtactgtattggttaatgctggtaagcgtattactgccaagaatatccgt
gatattgaaaagtcaggtcttaaacgcttagctatagagccagattcattgctaggtaag
attttggctaaagatgttatcgtacctgatacaggggaggtgttagcggttgctaatgat
gagattacagaggagctgttagcacagttagatattcatggcgttactaatttagaaaca
ctttatatcaacgagcttgatcaaggcggttatatttcagcgacattgagtaccgatgaa
acagttgatcagcaagctgcgcgcgtggctatttaccgtatgatgcgtcctggtgaaccg
cccacggaagaagcggttgagttgttgtttaaccgtttattctttaatgaagatagctat
gatttgtcgcgtgttggccgtatgaaatttaatacacggacatatgaacaaaaattaact
gatgttcaaaaagcgtcttggtatggtcgtttaattaatgaaacatttgtgggtgctgct
gataagggtggctatgtattaagcgtagaggacatcgttgtttcgattgcaacattggtt
gagctgcgcaatggtcatggtgaagtagacgatattgaccatttgggtaaccgtcgcgtt
cgttctgtcggcgagcttacagagaatcaattcagaagtggtttgtcacgtgtagagcgt
gcagtaaaagagcgtttgaatcaggcggagtcagaaaatctgatgcctaccgatttaatc
aatgccaaacctgtttctgcggctattaaagagtttttcggctccagccagttgagtcag
tttatggatcagaccaatcccctgtctgaaatcacccataaacgccgtgtgtcagcttta
ggcccgggcggtttgacccgtgagcgcgcaggttttgaggtgcgtgacgtacacccgacc
cattacggtcgagtatgcccgattgagacgccagagggtccgaacattggtttgattaat
tctctatctgtatatgccagaaccaatgagtacggtttcttggaaacgccttatcgccgt
gtaatcgatggaaaagtaactaacgaaattgattatttgtccgccattgaggagggcaga
tatgtgattgcgcaggcaaatgccgagctggacgaagagggtaatttgaccggtgatttg
attacctgtcgtgaaaaaggcgaaaccatcatggcaactgccgatcgcgtccaatatatg
gatgtggcaaccggtcaagttgtttctgtagcagcttcattgattcctttcttggagcat
gatgatgcgaaccgtgctttgatgggtgcgaacatgcaacgtcaggctgttccatgtttg
cgtcctgaaaaaccgatggtaggcacaggtattgagcgttctgttgctgttgattctgcc
actgctattgttgctcgtcgtggcggtgtggtggaatatgtggacgctaaccgtattgtg
gtgcgtgtacatgatgatgaggctactgctggtgaagtcggtgtggatatttacaattta
gtgaaattcactcgctctaaccaatctaccaatattaaccagcgtcctgttgtgaaggca
ggtgatgtgctgcagcgtggtgatgtggtagccgacggcgcctctactgatttaggagaa
ttagcgttaggtcaaaatatgaccatcgcgttcatgccatggaacggttataactatgaa
gactcaattctgatttcagaaaaagtagcagcggacgatcgttatacttctattcatatc
gaagaattgaacgtagttgcccgcgataccaaattaggtgcagaagaaattacccgcgac
attccgaatctttctgagcgtatgcaaaatcgtttggatgagagcggtattgtgtatata
ggtgccgaagtagaggccggtgatgtgttggtaggtaaagtaacgcctaaaggtgaaacc
caactgacaccagaagaaaaactgctacgtgcgatcttcggtgagaaagccagtgacgta
aaagacacttcattgcgtatgcctaccggcatgagcggaactgttattgatgttcaggta
tttacgcgagaaggtattcagcgcgacaagcgggcgcaatcgattattgatgccgaactg
aagcgttaccgccaagatttgggtgaccaattgcgtatttttgacaatgatgcgtttgat
cgtatcgaacgtatgttggttggccaaaaagcaaatggcggcccgatgaaacttgctaag
ggaagcgagattactgctgaatatttggcaagtttgcccagcaagcatgactggttcgat
attcgcccggttgacgaagatttggctaagcaacttgagctgatcaaactaagcttgcag
caaaagcgcgaagagtctgaagttctttatgaaattaaaaagaaaaaaatgactcaaggc
gatgagttgcaacctggtgtgcaaaaaatggtgaaagtatttatcgccattaaacgccgc
ttgcaagctggtgacaaaatggccggtcgtcatggcaacaaaggtgtggtatcacgtatt
ttgccggtagaagatatgccttatatggcagatggccgtcctgttgatattgtattaaac
cctctgggtgtgccttctcgtatgaatatcggccagattctggaagtacatttgggctgg
gcggcaaaaggtatcggtgagcgcatcgaccgcatgctagcagaacagcgtaaagtcggc
gaaatccgtgagttccttaaccgtttatacaatggcagcggtaagcaagaaaatctggag
gaattgagcgatgacgaaattctggcactagctgagaatttgaaagaaggcgcaactttt
gcttctccagtattcgatggtgctaaagaggcagaaatttatgagatgttggacttggct
tatccgagcgatgatccggaagttcaaaaaatgggcttcaacgatagcaaaacccaaatc
acattatatgatggtcgttcaggcgaaccgtttgaccgtaaggttactgttggtgtgatg
cattaccttaaactgcaccatttggtagatgaaaaaatgcatgcacgttcgactggtcca
tattcactggttactcagcaaccacttggtggtaaagcacaattcggtggtcagcgtttc
ggtgagatggaggtttgggcgctggaagcttatggtgccgcttatacgttgcaagaaatg
cttaccgttaaatcggatgatgtttccggccgtacgaagatgtatgaaaacattgttaaa
ggtgaacacaaaatcgatgcgggcatgcctgaatctttcaatgttttggtaaaagagatc
cgttcactgggcttggatattgatttagagcggtattga
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