Nematolebias whitei (Rio pearlfish): 119416096
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Entry
119416096 CDS
T08042
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119416096 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119416096 (cnot1)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119416096 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119416096 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
119416096
NCBI-ProteinID:
XP_037539201
LinkDB
All DBs
Position
10:6815750..6850623
Genome browser
AA seq
2407 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSTHLFAQLSKVLK
LNKVQEVIFGLALLNSSNTDLRVFAAQFIKQKLPDLLRSYVDADLSGTQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQDQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTIMESSLADFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGPSDDITIQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLHIVVHSIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLMNPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLTTMLTCLKSCAG
SVSQELSETILTMAANCNNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDHLTGMSNL
SLGGTATSHTQSMQSFQTSLTSALSNPLSPAKAFPPLPNPNPSTPFGGINISSQLPAMDS
GPLGSGIGSNSGFSLGMPTVTADPFGTRKISTPGLNPPTFQQTDLSQVWPEANQHFSKEI
DDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQ
YPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNR
LKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQVQAQS
QQPASLKAPQPGQPSTLVTTTTTTTTAAKTSTITRPTPSTFKKDMPPSINTTNIDTLLVA
TDQTERIVEPPETVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRVSI
EPNFHSLYSNFLDTLKNPELVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGM
ITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPWTMA
IMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKEKLKSLEEQLSAPKK
ETKPPEELLPASTTGDFVPFAAPTATPAATTTTCTTTGPPTPQFSYHDINVYSLAGLAPH
ININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIKKDFALDSE
ESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEASA
RIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERM
PEQIRLKVGGVDPKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKNQAWATDDVAQIY
DKCIADLEQHLHAIPPALAMNPLTQGLRSLLEAVALARNSRDGIAALGLLQKAVEGLLDA
TSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLI
RNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFQTIETLM
RTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAQSGPNFMMHSGISQASEYDDPPGLREKA
EYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYR
AQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVG
VLIQDHDVRQTDFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELIKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVGPLSVCSRSL
HNKLLIFLFVSQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMD
IFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLL
ERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQV
MEGTGAS
NT seq
7224 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacaacatattgtgaaccgtcacggt
cctgaggcagacaggcatctactacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagactttcaccagacacagtttctgatccaagagtgtgtgtct
ctgatatcaaagccaaactttatatctactctgtgttacgccatcgacaaccccctgcac
taccagaagagtttgaaaccatccactcatcttttcgctcaactgagtaaagtcctgaaa
ctcaacaaagtccaagaggtgatatttggccttgctttgcttaactccagcaacaccgac
cttagggttttcgccgcacagttcattaagcagaaacttccagacctcctacgttcatac
gttgacgcggatctcagtggaacccaagaaggtggcttccaggacatcgcaatagaggtg
ttgcacctgctgctctcccatctcctgtttggacagaagggagccagtggggtggggcag
gaccagatcgacgccttccttaagacactttgccgagatttcccccaggaacgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcaggggagttagctaagaccatcatggagagctctcttgccgacttcattcaa
gaagttggatatggcttctgtgctagtctggacgaatgccgaaacataatcctccagtat
ggggtgagagaggtgacggccagtcaggtagccagggtcctgggaatgatggctcgaacc
cactctggtccatctgatgacatcacaattcagtccatctctgctccaggaagtggtatc
tggagtgatggcaaagataagaacgatggttctcaggcccatacctggaacgttgaggtt
cttattgacgttgtcaaagaagtgaatcccaacctgaacttcaaagaggtgacttatgaa
ctggaccacccgggcttcataatccgggacagtaaaggcctgcatatagtggtgcacagt
atccagagagggctgggcctggaggtcttccctgtcgacctcatctaccgaccttggaaa
catgctgagggacagttatcattcattcagcactccctgatgaacccagatgtgttctgc
tttgctgactatccttgtcacactgtggccatcgacatcctcaaagccccaccagaggac
gacaacagagaaattgccacatggaagagtctggacctggtggaaagccttctcagactc
tctgaggttgggcagtacgagcaggtgaagcaacttttcagcttcccaatcaagcactgc
ccagacatgttggttctggcactgctgcagatctccacctcctggcacacactgcgccat
gagctcatctctaccctaatgcccatctttctgggcaaccaccccaactctgccattatt
ctgcactatgcctggcatgggcagggccagtctccttccattcgtcagcttattatgcat
tctatggcagagtggtacatgagaggagagcagtatgatcaggctaagctgtctcgcatc
ctggatgtggcccaggacttgaagtctctttctatgctgctgaatggtactccgtttgcc
tttgttattgaccttgctgcactcgcctctcgccgtgaatacctcaaacttgataaatgg
ctgacggataaaatcagagagcatggggagccttttatccaggcctgcgtgacattcctg
aagaggcgctgcccgtctataatggggggtctggcccctgacaaggaccagcccaaaagt
gcccagttgcccccagagactttaaccaccatgctgacttgtttgaagtcctgtgctggg
agtgtgtctcaggagttgtcggagaccatcctcaccatggctgccaactgtaataatgtc
atgaataaagctcggcagccgccgccaggagtaatgcccaaaggacgagccccgagtact
agcagcttggacgccatctcacctgtgcagatggaccatctgactggtatgagcaacttg
agcctgggtggaacggctacctcccacactcagagcatgcagagcttccaaacttctctg
acttcagctctcagtaaccccctctcccctgcaaaggccttcccaccactccctaaccct
aaccccagcacgccgtttgggggcattaatatcagctcgcagctccctgctatggactct
ggtccactgggctcaggtatcggatccaacagtggctttagtctgggaatgccgacagta
acagccgatccgtttggtaccaggaagataagcacaccgggcttgaacccgcctaccttt
cagcagactgatctttctcaggtgtggcctgaggcaaaccagcactttagcaaggagatt
gatgatgaagcaaacagctacttccagcgaatctacaaccacccgcctcacccaactatg
tctgtagatgaagtactggaaatgcttcaaaggttcaaggactcgaccatcaagcgggaa
cgagaagtgttcaattgcatgcttcgaaacttatttgaggagtatagatttttcccccaa
taccccgacaaggagctgcacatcactgcctgcctcttcggtggcattatcgagaaaggt
cttgtgacctacatggccctgggcctggccctgcgatatgttctggaagccttacggaaa
ccgtacggatcaaaaatgtattactttggaattgctgctctagatcgattcaaaaacaga
cttaaggactatcctcagtattgtcaacacctggcctcaattgcccactttttgcagttt
cctcaccatttacaagagtatatcgagtatggacaacagtcccgggaccctccggtgaag
atgcagggctccatcaccacacctggaagcctggctctggcccaagttcaggcccagtca
caacaacctgccagcctcaaagccccacagccaggccagcccagcaccctggtcaccact
accaccaccacaaccacagcagccaagaccagcaccatcaccagacctacacccagcacc
ttcaagaaagatatgcctccttccattaacaccaccaacatagacaccctactggtggcc
actgatcagacagaaaggattgtagaacctccagagaccgttcaggagaagattgctttc
atcttcaacaacctttctcagtccaacatgacacagaaggttgaagagttaaaagaaact
gtgaaggacgagttcatgccatgggtgtctcagtacctggtgatgaagcgtgtcagcatc
gagcccaacttccacagtctctattcgaacttcttggacaccctcaagaacccagagtta
gtcaagatggttctcaatgaaacttacaggaatattaaggtgcttctgacctcggataag
gcagctgcaaacttctctgatcgctccctgctgaagaacctgggccactggttgggcatg
ataacgctggctaaaaataagcccattctatacacagatctggagcttaaatctctgctg
ctggaagcttatgtgaaaggccagcaggagctgctttatgttgttccctttgtggccaaa
gtcttggagtccagtctgcgtagcatggttttcagacctcagaatccttggactatggcc
atcatgaatgttcttgctgagcttcatcaagaacatgacctgaagttgaacctaaagttt
gagattgaagttctgtgtaagaacttgtctctggacatcaacgagctgaagcctggaaac
ctgctgaaagacaaagagaagctgaagagcctggaggagcagctgtctgcaccaaagaaa
gaaaccaaacctccagaggagctgctaccagcttctaccacaggagactttgttccattt
gcagctcctaccgcaactccagctgcaaccaccaccacgtgcacgaccaccgggcccccc
acgccacagttcagttaccatgacatcaacgtgtactccctggccggcctggccccacac
atcaatataaatgtcaatatcccgctgctgcaggctcatcctcagctgaagcaatgtgtg
cggcagtcagtggagcgggcggtccaggagcttgtgcaccctgtggtggatcgttccatc
aaaattgcaatgaccacctgtgaacaaatcatcaagaaggattttgccctggattcagag
gagtcccgcatgcgtgtagctgcacatcacatgatgagaaacctgactgctggcatggcc
atgatcacgtgccgcgagcctctgctgatgagcatcgccaccaatctgaagaacagcttc
gctgctgcgctcagggcaccgaccccccagcagagggagatgatggaagaggcttctgcc
agaatcgcccaggacaactgtgagttagcttgctgcttcattcagaaaaccgccgtggag
aaggctggccccgaaatggacaagagactggccacggagtttgaactgaggaaacacgct
cgccaagaaggtcgccgttattgtgatccagtagttctgacctaccaggctgaacgtatg
cccgagcagatcagactcaaggtgggaggagtggaccccaaacagctggctgtttatgag
gagtttgccaggaacatcccaggtttcttaccaagcaatgatctctcacaacccaccggc
tttctagctcagcccatgaagaaccaggcatgggccactgatgacgtggctcagatctat
gataagtgcatagcagacctggagcagcatcttcatgccattcctccagcacttgccatg
aaccctctgacccagggcctgcggagtttactggaagctgtggctttagccaggaactcc
agggatgggattgctgctctcggcctcctgcagaaggctgtggagggtcttctggatgcc
acaagtggagctgatgctgacttgctgctgcgctacagagagtgccacctgctggtgctg
aaagccctgcaggacgggcgtgcttatggaccacagtggtgtaataagcagatcaccagg
tgtctgattgaatgccgcgacgaatacaaatacaacgtggaggccgtggaacttctgatc
aggaaccatctagtaaacatgcagcagtacgacgtgcacctggcgcagtctatggagaac
gggttgcactacatggccgtagcgtttgccatgcagttggtgaagctgctgctggtggac
gagcgcagcgtgagccacgtcaccgaggccgacctcttccaaacgatcgagaccttaatg
agaacctgcgcacactccagagccaatgcaccagaggggcttccccagctgatggatgtt
gttcgctccaactatgaggcaatgattgaccgagctcaaagtggacccaacttcatgatg
cattctgggatttctcaggcttcggaatatgatgatcctccaggcctgagagagaaggcc
gagtacctgctgagggaatgggtcaacctgtatcactcagctgcagctggaagggacagc
accaaagctttctctgccttcgttggccagatgcatcagcagggcatcttgaagacggat
gacctgattacgcggttcttccgtctgtgcactgaaatgtgtgtggagatcagctaccgt
gcacaggctgaacagcagcacaaccccgcagccagcgcagccatcatccgagccaaatgt
taccacaacctggacgcctttgtgaggctcatagccctgctggtgaaacactctggagag
gccaccaacacggtgaccaaaatcaaccttctcaacaaggtcctcggtattgtagtcggt
gtcctgattcaggaccatgatgtccgtcaaacagatttccagcagctgccgtaccaccgc
atattcatcatgctgctgctggagctcaatgcccccgaacacgtcctggagaccatcaac
ttccagaccctcactgccttctgcaatacgtttcacatcctgaggcccactaaagccccg
ggcttcgtgtacgcctggctggagctcatctctcaccgcatcttcattgccaggatgttg
gcacacacgccacagcagaagggttggcccatgtatgcacagctgctgattgatctcttt
aagtacctcgcccctttcctgaggaatgtagagctcatcaaacctatgcaaatcctctac
aagggcacgctgagggtgcttctcgtcctgcttcacgacttcccagagttcctgtgtgac
tatcattatggcttctgtgacgttattccacccaactgcatccagctccgcaaccttatc
ctcagtgccttcccacgcaacatgaggcttcctgaccccttcactcctaatctgaaggtg
gacatgctcagtgagatcaatattgcccctcgtatcctgaccaacttcaccggcgtgatg
ccgtctcagttcaagaaggacctggactcgtatctgaagactcgctcacctgtcactttc
ttgtctgagctgcgcagtaacctgcaggtaggaccgctgtctgtctgctcacggtctctt
cataacaaacttctaatctttcttttcgtctcccaggtgtcgaatgaaccaggaaaccgc
tacaacatccagctgatcaacgctctagtgttgtatgtaggcacacaggccatcgctcac
atccacaataagggcagcaccccctccatgagcaccatcactcactctgcacacatggac
atcttccagaacctggctgtggacctggacactgagggacgttacttgttcctgaatgcg
atcgccaaccagctgcggtacccgaacagccacacccactacttcagctgcaccatgctt
tacctgtttgctgaggccaacaccgaggctatccaggagcagatcacgagggttctgttg
gagaggctgattgtgaacaggcctcacccgtgggggcttctcatcaccttcatcgagctg
attaagaatcctgccttcaagttctggagtcacgactttgtgcactgtgcccctgagatt
gaaaagctgttccagtccgtagcccagtgctgcatggggcagaagcaggcccagcaggtt
atggaaggaactggtgccagttaa
DBGET
integrated database retrieval system
