Nematolebias whitei (Rio pearlfish): 119418539
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Entry
119418539 CDS
T08042
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh00100
Steroid biosynthesis
nwh01100
Metabolic pathways
Module
nwh_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
119418539 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
nwh01006
]
119418539 (fdft1)
Enzymes [BR:
nwh01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
119418539 (fdft1)
Prenyltransferases [BR:
nwh01006
]
Terpene biosynthesis
Squalene/phytoene synthase
119418539 (fdft1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
Motif
Other DBs
NCBI-GeneID:
119418539
NCBI-ProteinID:
XP_037541780
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All DBs
Position
12:33161420..33170246
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AA seq
453 aa
AA seq
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MAGACCKCSGSLSVFRRSLSVAPRCCGSAPRSPFLQQGWRLGERGLQEAARPRRPVGFYR
QTAFLCLSCQESMTESLRTCYVHLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTVE
DDMTIPLDKKVPMLNDFHTYLFEEEWCFTESQEKDRQVLEDFPTISLEFRNLAQEYRDVI
SDICHRMGVGMAEFLEKKVASMNEWDQYCHYVAGLVGIGLSKLFSASQLEDPEVGQDTEL
ANSMGLFLQKTNIIRDYLEDTQQGRTFWPQEAWSQFASQLEDFAHPEKLESALSCLNLLV
TDALHHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSRCYNNPMVFQGVVKIRKGQAVT
LMMEATNMIAVQTIITQYSQEILQKVSLTDLSRDKTLHILAEIQEKSTLPRSSFSRTHHL
SPMYLSAAMLLAALSWQYLSTTAAHSQGTGDMQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcttgttgcaagtgttcgggctctctgtccgtgtttaggcgctctctctcg
gtggcgccgcggtgctgcggctccgctcctcggtctcccttcctgcagcagggctggagg
ctcggagagcgaggcctgcaggaggccgcccgaccccgcagacccgtgggcttctaccga
caaacagccttcctttgtctctcctgccaggagtccatgacggagagtctgcggacctgc
tacgtccatctgaaccagacgagccggagttttgcagccgtgatccaggcgctggacgga
gagctgagacatgccgtttgcatcttctacctggtgctgcgcgcgctggacacggttgag
gacgacatgacgatccccctggacaagaaggtgcccatgctgaatgatttccacacctac
ctgttcgaggaggagtggtgcttcactgagagccaggagaaggatcggcaggttctcgag
gatttccccacgatctcactggaattcagaaacctcgctcaagaatacagagacgtcatc
tcggatatctgccaccgtatgggggtcggcatggctgagttcctggagaagaaggtggca
tccatgaatgagtgggaccagtactgccactatgtcgctggtctggtcggcatcggcctg
tcgaagctcttctctgcctcccagctggaggaccccgaagtgggacaggacactgagctg
gcaaactccatgggtctgttcctccagaagaccaacatcatccgagactatctggaagac
acacaacaaggtcgtaccttttggccacaagaggcttggagccagtttgccagtcaactt
gaggattttgctcaccctgagaagctggagtcggctctgtcttgtctcaacctgctggtc
accgatgctctgcaccacgtccccgacgtcatcgcctacctgtctcggctgcgcaaccaa
agcgtcttcaatttttgtgccattccgcaagtgatggcaatagctacactgtcaaggtgc
tacaacaaccccatggtgttccagggagtggtgaagatcagaaagggacaggctgtcact
ctcatgatggaagccaccaatatgatagctgtgcagaccattatcacccagtacagccag
gagattctacagaaggtctccctcacagatctgtcgcgggacaagactctccacatcctg
gctgaaatccaggagaagtccacccttccgcggtccagcttctccaggacccaccacttg
tctccgatgtacctgtcggcagccatgctgctggccgctctcagctggcagtacctcagc
acgactgcagctcattcgcagggcacaggggacatgcaatga
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