Nematolebias whitei (Rio pearlfish): 119419105
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Entry
119419105 CDS
T08042
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119419105 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nwh03041
]
119419105 (prpf40a)
Spliceosome [BR:
nwh03041
]
Complex A
U1 snRNP components
U1 related factors
119419105 (prpf40a)
Complex B
119419105 (prpf40a)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
119419105
NCBI-ProteinID:
XP_037542333
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All DBs
Position
13:complement(18474891..18488874)
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AA seq
879 aa
AA seq
DB search
MSSSETSAGQSQAVSYTAVPSATIPPPYMAPPGIPPHYPPMVIPPMSQRPPSMTPLPPGI
MPPGIMPPMAAPPMGQIPGMMPPMMPGLMIPPRIPAVAVQPTGPPGVDSTVAAPGTNQST
RNGSPQEEQQKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPDDLKSPAEQLLSKCPWKEY
KSDTGKPYYYNSQTKESRWTKPKDLEDLEAMIKAEENGTTEVVAPGTTTAPVVQADNTAT
METVMEVETAAAVISEEPQSQVTVNQTAEVKAAEAPVTSSESAVVTENTASVEVKERPEP
VKKTYKWNTKEEAKQAFKELLKEKGVASNSSWEQAMKLIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFNELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRTMEKEEEEEKQKTLLRERRRQRKNRESFQKFLDELHD
HGQLHSMSSWMEMYPSLSSDMRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFSVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKTMLKQATPPLEPEVTWEEARDRFLKEPAFEDVTLESERKRIFKDFMHILEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSASESEEEEYHKKKKRSLSKSPSERSSSGESERS
YKKSKKHKKKGKRRRHKSASPDSESEKKGRERDGKHEREVEKDKENDKSRGKSRSESKLK
PVKKKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgtcagagactagtgctggccagagccaagctgtgtcttatacagctgtgccc
tctgcaacaatacctcccccatatatggcaccaccgggaatacctccccactaccctccc
atggtaataccccccatgagtcagcgaccacccagcatgactccattgccaccgggtata
atgccccctggcatcatgccaccaatggctgcaccaccaatgggacagatcccaggcatg
atgccacccatgatgccaggactgatgatacctcctcgcatcccagctgtagctgtacaa
ccaacgggaccacctggtgttgattccacagttgctgcacctggaacaaatcagagtact
agaaatggatcgccacaagaagagcagcaaaaaaaaaagtctctgtggacagaacacaaa
tcactagacgggaagacctattattacaatacagagacgaagcagtccacatgggagaag
ccggatgacctcaaatctcctgcagagcaattgctgtctaaatgtccatggaaggagtac
aagtcagacacagggaagccttattattacaactctcagacaaaggagtccaggtggacc
aaacccaaagatctggaagatctggaagctatgatcaaagcagaagagaatggaactaca
gaggtggtggcccctggaacaactacagctcctgtggttcaagccgataatacggccact
atggagacggtaatggaggtggaaactgcagcagcggtaatctcagaggaaccacagtcc
caggtgaccgtgaatcaaacagctgaggtcaaggctgcagaagcacctgtgacgtcctcc
gagagtgcagtcgtcactgagaacacagccagtgttgaagtcaaagaacggcctgaacct
gtgaagaaaacgtacaagtggaacacaaaagaggaggccaagcaggccttcaaggagctg
ctgaaggaaaagggtgtggcatcaaactcttcttgggaacaggctatgaaactgatcatc
aatgatcctcgctacagtgctcttcctaagctgagcgagaagaagcaggcgttcaatgcc
tacaaagtccaaacagagaaggaggaaaaggaagaggccagaattaaatacaaggagtcc
aaagagacgttccagaggttcttggagaaccatgacaagatgacatccaccaccagatac
aagaaagcagagcaaatgtttaacgagcttgaagtgtggagttgcgttcctgagagagac
cggctggagatctacgaggatgtgttgttctacctcgccaaaaaagagaaggagcaagcg
aagcagctgagaaagaggaactgggaagctttgaagaacattctggacaacatggccaat
gtgacgtaccggaccacctggtctgaagctcagcagtatctgctggacaaccctacgttt
gctgaggacgaggagctgcagaatatggataaagaagacgccctcatttgttttgaggag
cacatccgaacgatggagaaagaggaggaagaggagaaacagaagactcttctcagggaa
agaaggagacagcgcaaaaacagagagtccttccagaaatttctggacgagctccacgac
cacggccagctccactccatgtcctcctggatggagatgtacccgtccctgagctcagac
atgcgcttcgccaacatgctgggccagcccggttccactcctttggacctcttcaagttc
tacgtggaagacttgaaagctcgttaccacgatgaaaaaagaataatcaaggacatcctc
aaggataaagggttctccgttgaagtcaacaccagcttcgatgactttggatcggttatc
agctcggacaagagagccaccactctggatgctggaaatataaagctggccttcaacagc
ttactggagaaagctgaagccagagagagggagcgcgagaaggaggaggcccgcaagatg
aaaagaaaagaagcagcttttaagaccatgctgaagcaggccacaccccctctggagcca
gaggttacatgggaggaagccagagacagattcctgaaagaacctgcttttgaagacgtg
acgctggagtccgagaggaaaagaatattcaaagatttcatgcatatcctagagcatgag
tgccagcatcaccactccaagacgaaaaagcactcgaagaagtccaagaagcaccacagg
aaacgctctcgctctcgatcagcctcggagtctgaggaagaggagtaccacaagaagaag
aagcggtcgctgtccaagtctccctctgaacgctcgtctagcggagagtctgagagaagc
tataaaaagtccaaaaagcataagaagaaggggaagaggagacgccacaagtctgcctcg
ccggattctgagagcgagaagaaaggacgagagcgcgacgggaagcacgagagggaggtg
gagaaggataaagagaacgacaagtctcgagggaagtcccgctcagagtccaaactgaag
cctgttaaaaagaaagcagctaaagaggaggggggctgggacacctcaggcagcgagctg
agtgaaggagagctggagaaaagacgacggactttactggaacagctagacgcgccttga
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