Nematolebias whitei (Rio pearlfish): 119419735
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Entry
119419735 CDS
T08042
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha
KO
K04834
voltage-gated sodium channel type II alpha
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
nwh04040
]
119419735 (scn1laa)
Ion channels [BR:
nwh04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
119419735 (scn1laa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
PFF1_TM
FUT8_N_cat
DivIC
Motif
Other DBs
NCBI-GeneID:
119419735
NCBI-ProteinID:
XP_037543047
LinkDB
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Position
13:19885266..19918294
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AA seq
2003 aa
AA seq
DB search
MAQFFTPPGPDSFRTFTQESLKAIESRIAEEKAKKPKDKKKKSKNENEPKPSRDLEAGKP
LPFLYDIPPGLVSTALEDLDPYYNNQKTFIVINKGKYIFRFNAASALYVLSPFNCIRRLS
FKILVHSYPFNLMVIMLTILVNCGFMTLSTQPDWAKNVEYAFTAIYTCEFLVKVLARGFC
IGKFTFLRDPWNWLDFCVIVLAYLTEVSDKIGNLSALRTFRVLRAFKAISVIPGLKTIVG
ALFQSVKKLADVMILTVFCLSVFALVGLQLFMGVLRSKCIRVPDEGDMMFKLTFCNGSDN
VYIGNKSNHYFLPGNRDAMLCGNSTAAGQCPEGYKCCKAGTNPNFGYTSFDNFAWAFLSL
FRLMTQDYWEFLYQQTLRAAGKPYMVFFVLVIFLGSFYLINLILAVVAMAYEEQSQANIR
KAQEKEEEYQAMLEQLKQQQEDAEAIAKGMSEDGQTFDKGGGTESSSDASKLSSKSAKER
RNRRKKRKEEEEKEVSKVPKSNSLDSMKRACFRFSVDENMLNYDMKCSPMHQSFLSFRGP
LLSSRRNSKTSFCSFQSQPQDVSSENEFADDENSIFEDNLSRRGSLFHAQRCDRCSSSMS
QCSFLPHLRFQPTSVRHSSVDCNGVVSLVDGNFLPSSPPMGLLLPKVTLDVASTGDNADT
TDTECRKSSGGNYGEFLDLLEAPEFRQRAQSIASVITSTIDELEESRQKCPPYWYKFAHT
FLIWEFCPGWMKIKKMVNLIVMDPFMDLAITICIVLNTLFMAMEHQPMEPWFKNMLTVGN
LVFTGIFTAEMVFKIIALDPYYYFQGGWNIFDSLIVCLSLIELSLKNVKGMSILRSFRLL
RVFKLAKSWPTLNKLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYRDCVCKIS
DDCRLPRWHMSDFFHSFLIVFRVLCGEWIETMWDCMEVAGIHKCLILYMMVMVVGNLVVL
NLFLALLLSSFSADNLAAVDDDSEMNNLQIAIGRIRRGNAYIKSLFRSTCNSLCLRDKKK
NKSEDQSLDELHKSFGRNGVPSYTIKDFSLDGNGDVTGVDKSGDKYIVNSKSDDSILSFI
NNPSLTVSVPIAAEESDFEMLNTEDFSSASTNLPECHLAIDDDGQFSSSSEGSTVDGQQD
GEVLENDYDLEVKKEPKDCFTAECVQKFKCCQVNVNVGFWKLWWSFRKTCYQIVEHNWFE
TFIIFMILLSSGALAFEDIYIKQRKIIKIILEYADRIFTFIFILEMLLKWVAYGFAKYFT
NAWCWLDFLIVDVSLVSLVANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALM
GAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKFSSCFDTITDKAFNISQVKNKHACEKLNE
TGNYTARWKNLAVNYDNVAMGYLALLQVATFKGWMDIMYAAVDSPENPGEQPDYERNFEM
YTYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKP
QKPIPRPANNIQGYIFDLVTKQVFDIVIMVLIWLNMVTMMVETEYDENEKKQVLKNINIV
FIVVFSGECLLKMIALRQYFFMNGWNIFDFIVVILSIVGTFLANIIEKYFVSPTLFRVIR
LARIGRILRLVKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEK
GIDDLFNFETFGNSMICLFQITTSGGWDLLLAPMLNTDTADCDNTMEHPGSTVKGNCGRP
SVGIAFFVSYIIICFLIVVNMYIAVILENFGVATEESADPLSEDDFEMFYEVWERFDPHA
TQFVKYNMLSELANALNPPLRIPKPNRKILISMDLPIVSGDRIHCLDILFAFTKRVLGES
AEMDNLRGQMEERFMASNPSKMSYEPITSTLRRKQEDLSAVVIQRAYRHFAVRSKLSCIL
NVDIKNDEEVTDKQHLNKKTKKTSGADKTEPTPLTDSCDVHDVATDGKNKCEKDRSEKEV
ESKDVKEQDTEESIGEEEKTLKE
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atggcacagttctttactccaccaggtccagatagcttccgcaccttcactcaagagtcc
ctcaaagctatcgagagccggattgctgaggagaaagccaagaaacccaaagacaaaaag
aagaaatccaagaacgagaatgagcctaaacctagccgagaccttgaggcgggcaagccg
ctcccttttctctatgacattcctccaggcctggtgtcgactgccctggaggacctggat
ccctattataacaatcagaagacttttatagtaataaacaaggggaaatacatttttcgc
ttcaacgctgcttctgccttgtatgtcttgagccccttcaattgtataagaagattatca
ttcaagattttggtacactcatatccttttaacctcatggtgatcatgctcaccatcctc
gtcaactgtggattcatgactctgtctacacagcctgactgggcaaagaatgtggagtac
gcatttaccgcaatctatacttgtgagttcctggttaaggtgttagccagggggttctgt
ataggaaagttcacatttctaagagatccctggaactggctggatttctgtgtcattgtc
ttggcgtatctcactgaggtttccgataaaattggcaatttgtccgctcttcgaacattc
cgagtgctaagagctttcaaagctatttcagtcatcccaggcctgaagacaattgttggt
gcgttgtttcagtcagtgaagaagcttgctgatgtcatgatcctgactgttttctgcctg
agcgtatttgcactagtaggattacagctgttcatgggtgttttaaggagcaagtgtatt
cgggtgccagatgagggggatatgatgtttaagctcaccttttgtaatggtagcgacaat
gtttacataggtaacaaaagtaatcattacttccttccaggaaatcgagatgcaatgctt
tgtggaaacagcactgcagctgggcagtgtccagaggggtataaatgctgtaaagccgga
acaaacccaaactttggttacacaagtttcgacaacttcgcttgggccttcctttctctt
tttagactgatgacacaagattactgggaattcctttatcagcagactttgcgagctgct
gggaaaccctacatggtgttttttgtcttggtcatattcctcggttccttctacttgatc
aacctgattttggctgtagtagcaatggcctacgaggagcagagccaggccaatataagg
aaagctcaggaaaaggaagaggagtatcaggcaatgcttgagcagctcaaacagcagcaa
gaggacgctgaggcaatagcaaaaggtatgtcagaagatggacagacctttgataaaggt
ggtggcactgagagttcctctgatgcgtccaagctgagctccaaaagtgccaaggagagg
cgtaacaggagaaaaaaaagaaaagaggaggaggaaaaagaggtgtcaaaagttcctaaa
tccaactctctggacagtatgaagagggcttgtttccggttctctgtggatgaaaacatg
ctcaactatgacatgaaatgctcccccatgcatcagtcttttctgagctttcgtggacca
ctgttgtcatctagacgaaacagcaagaccagcttttgcagctttcaaagccagccacaa
gatgtgagctcagaaaacgagtttgcggatgatgagaacagcatttttgaagacaaccta
agtcggaggggatccctgtttcatgctcagaggtgtgatcgatgcagcagcagtatgagc
cagtgcagcttcttaccgcatctccgatttcagcccactagcgtcaggcacagctcagta
gactgcaatggggttgtgtctctggtggatgggaattttcttccatcatcaccacctatg
gggcttcttctgcctaaagtgacactagatgtggcctccactggagacaatgctgacaca
actgatacagaatgcaggaagtccagtggcggaaactacggagagtttttggacttactc
gaggcccccgagttcagacagagagcacaaagtatagctagtgtcattacaagcactata
gatgaacttgaagagtcgaggcagaagtgccctccttattggtacaagtttgctcacaca
ttcctcatttgggagttttgtccagggtggatgaaaatcaagaaaatggtcaacctaatt
gtaatggacccatttatggacctagctattaccatctgcattgtactgaacacattattt
atggccatggagcatcagccaatggaaccgtggttcaaaaacatgttgactgtgggaaac
ctggtatttactggcatcttcacagctgaaatggttttcaagatcattgcgttggaccca
tactattactttcaagggggatggaacatttttgattcgctcatcgtctgtttaagcttg
attgagcttagtttgaagaatgtgaagggcatgtctattttgagatcatttaggctgctg
agagtttttaagcttgctaaatcttggcccactctaaacaaactcatcaaaattattggt
aattcagtgggagctttgggaaacctaaccctggtgctggccattattgttttcatcttt
gctgttgtgggcatgcagctgtttggaaaaaactacagggactgtgtgtgtaagatctct
gatgactgtaggctgcctcggtggcacatgagcgacttcttccattcattcctcattgtg
ttccgagtgctttgtggggagtggatagagaccatgtgggactgtatggaggtggctggg
atccacaagtgcctcattctctacatgatggtcatggttgttgggaatcttgtggtgttg
aacctgttcctggccctgctgttaagttcattcagtgcggataacctggcagctgtagat
gacgacagcgagatgaacaatttgcagattgcgattggacgtatacgccgaggcaatgct
tatatcaagtcactgtttcgaagtacctgcaacagtttatgtctcagggataaaaagaaa
aacaagagtgaagaccagtctctggatgagctccacaaatcttttggacgaaatggtgtc
cctagctataccattaaagacttctctttggatggcaatggggatgtgactggtgtagac
aaatctggagacaagtatatagtcaacagcaagagtgatgattccatcttgtctttcata
aacaacccaagtctgactgtttctgttccgattgctgcagaggagtctgactttgaaatg
ctcaacactgaggattttagcagcgcatcaaccaacttacccgagtgccacctggctata
gatgatgatggacagttcagttccagttcagagggtagtacagtggatggtcagcaagat
ggagaagtacttgaaaatgactatgatttggaagtgaaaaaggaacccaaggactgtttt
actgcagaatgtgtgcaaaaatttaagtgttgtcaggttaatgtgaatgtgggcttttgg
aagctgtggtggtcattcagaaaaacctgctatcaaatagtggagcacaactggtttgag
accttcatcatcttcatgattttgctaagcagtggagcacttgcttttgaagacatctac
attaagcagaggaagatcataaaaataatattggaatatgctgacagaattttcaccttc
atctttattctggagatgctgctgaaatgggtagcatatgggtttgccaagtattttaca
aatgcttggtgctggttggacttcctgattgttgatgtttcactggtcagtcttgtggcc
aatgctttgggttattcagagctcggtgcaatcaagtcactaagaactctgcgagctctg
aggcccctaagagccctgtcaaggtttgaaggcatgagggtcgttgtcaatgccttaatg
ggagccattccttccatcttcaatgtgctgctggtttgtctcatcttctggctcatcttc
agcatcatgggagtcaacttatttgctgggaagttcagcagttgttttgacacaatcaca
gataaggcttttaacatatcacaagtgaaaaataaacatgcttgtgaaaaattaaatgaa
actggcaattacaccgcacgctggaaaaatctcgcagtcaactatgacaatgttgccatg
ggctaccttgcacttttgcaagtggctacatttaaaggctggatggatatcatgtatgct
gctgtggactcaccagaaaacccaggcgaacaaccggattatgaaagaaactttgagatg
tacacatattttgttgtcttcatcatattcggatccttttttaccctcaatctcttcatt
ggtgtcattatagataatttcaatcagcaaaaaaaaaagtttggaggtcaggatattttc
atgactgaagaacagaagaaatactacaatgcaatgaaaaagttggggtcaaagaaacca
cagaaacctatacctaggccggcgaacaatatacaaggatacatctttgacttagtcaca
aaacaagtatttgatattgtgattatggttctaatctggcttaatatggtaaccatgatg
gtggaaacagaatatgacgaaaatgaaaaaaagcaggttctcaagaacatcaacatagtg
ttcatagtcgtcttcagtggagagtgtctgttaaagatgattgcacttcgacaatacttc
ttcatgaatggctggaatatatttgatttcatcgtagtcatcttgtcaattgttggcaca
tttctcgcaaatataattgagaagtatttcgtctcgccaaccctgttcagagtcatacga
ttggctcgaattggccggatcctccgccttgttaaaagtgccaaagggatccgcacactc
ttgtttgccttgatgatgtcacttcctgccttgttcaacattggtctcttgctcttcttg
gtgatgtttatctacgccatctttggcatgtcaaactttgcttatgtcaagaaagaaaag
ggcattgatgaccttttcaattttgagacttttggcaacagcatgatctgtttgtttcaa
attaccacgtcaggggggtgggacctccttttagcgcccatgctgaacacagacacggcg
gactgtgacaatacaatggagcatccagggagtacagttaaaggaaactgtggaaggcct
tcagtgggaattgccttctttgtgagttatatcattatctgcttccttattgtggtgaac
atgtatattgcagtcattctggagaactttggtgtggcaactgaggagagcgccgaccca
ttaagtgaagatgactttgaaatgttctatgaggtctgggaaagatttgatcctcatgca
acacagtttgtcaagtacaatatgctttcagaattagcaaatgctctcaacccaccatta
cgtatccccaagcctaacagaaagatactcatatctatggatttaccaattgtgagtggt
gaccgcattcactgcctagatatcctgtttgccttcacaaagcgtgttttgggtgagagt
gcagagatggacaacctgagaggacaaatggaggagcgcttcatggcctccaatccttcc
aaaatgtcctacgagcccattacatccacccttcgccgcaaacaggaagatttatcagct
gttgtgattcagagagcgtacagacatttcgcagttaggagtaagctctcttgcatactg
aatgttgacattaaaaacgacgaagaggtcactgacaaacaacatctgaataaaaaaact
aaaaaaacttcaggcgcagacaaaactgagccgacgcctttgacggactcatgcgacgtt
cacgacgtggcaacggacgggaaaaacaaatgcgaaaaagacagaagtgaaaaagaggtt
gagagcaaagatgtcaaagaacaagacacagaggagagtattggagaggaagaaaagact
ttgaaggaatga
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