Niabella yanshanensis: U0035_09725
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Entry
U0035_09725 CDS
T09723
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nyn
Niabella yanshanensis
Pathway
nyn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nyn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U0035_09725 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nyn03021
]
U0035_09725 (rpoB)
03400 DNA repair and recombination proteins [BR:
nyn03400
]
U0035_09725 (rpoB)
Enzymes [BR:
nyn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U0035_09725 (rpoB)
Transcription machinery [BR:
nyn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U0035_09725 (rpoB)
DNA repair and recombination proteins [BR:
nyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U0035_09725 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WQD40424
UniProt:
A0ABZ0WCG7
LinkDB
All DBs
Position
complement(2395496..2399299)
Genome browser
AA seq
1267 aa
AA seq
DB search
MSATSVKSRVNFGKIKHLAETPDLLEVQIQSFKEFFQLETTPDKRNIEGLFRVFKDNFPI
TDTRNIFVLEFLDYFIDPPRYSIDECMERGLTYAVPLKAKLRLSCNDEEHVDFQTIVQDV
FLGNIPYMTPRGTFVINGAERVVVSQLHRSPGVFFGQSVHPNGTKIYSARVIPFKGAWME
FATDINNVMYAYIDRKKKFPVTTLLRSIGYETDKDILELFGMADEVAGDQKALEAHLGKR
LAARVLRTWVEDFVDEDTGEVVSIERNEIVMERDTVLDEEAIETIVDMAIDTVFIQREDV
GGDYAIIYNTLNKDTSNSELEAVQFIYRQLRGADAPDNETARGIIDKLFFSDKRYDLGEV
GRYKINRKLNIDAPLDQKTLTKLDIIEIIKYLVRLTNGKAEIDDIDHLSNRRVRTVGEQL
YAQFGVGLARMARTIRERMNVRDNEVFTPVDLINARTLSSVINSFFGTSQLSQFLDQTNP
LSEITHKRRISALGPGGLSRERAGFEVRDVHYSHYGRLCTIETPEGPNIGLISTLCVHAT
INEMGFIETPYHKVVNGKVDVKKLKFLSAEEEDTAKIAQANTALDADGNFVEEKIESRET
GDFPILDKSEVEYMDVAPNQIVGLSASLIPFLEHDDANRALMGSNMQRQAVPLLRPDAPI
VGTGLEGKAARDSRIQIHAEGDGVVEFVDATEIHVRYDRDVNAKLVSFEEDLKIYKLTKF
IKTNQESCINLMPTVKKGQKVKNGDFLTQGYATQNGELALGKNLKVAFMPWKGYNFEDAI
VISERVVKEDMFTSIHISEYELEVRDTKLGEEELTADIPNVSEEATKDLDENGIIRIGAQ
IKEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDAKDASLKAPNGVEGVVIGKKLFQR
AKKDKNAKVREKAAIEKLDRVHEKNEQDILNVLLEKLGTLLENQTSVGVKNSFDEIVIGR
NSKFNAKNLASLDYANINPLGWTTDEKINDQVNTLLHNYSIKFNEELGRYKREKFNISIG
DELPAGVLKLAKVYLAVKRKLKVGDKMAGRHGNKGIVAKIVRQEDMPFLEDGSPVDIVLN
PLGVPSRMNLGQIYETVLGWAGKNLGVKFATPIFDGASTEEIENYCDEAGIPKFGHTHLY
DGETGERFHQKATVGVIYMIKLHHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEM
EVWALEAYGASNILQELLTIKSDDIIGRAKTYESIVKGENVPRAGVPESFNVLVHELRGL
GLDLTFE
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctacaagcgtaaaatcaagagtgaatttcgggaaaatcaagcatctggctgaa
acgcccgatttactcgaagttcagattcaatcatttaaagagtttttccagcttgaaacc
acacccgacaagcgtaacattgagggcttgttccgtgtgttcaaagataacttccctatc
actgatacgagaaacatctttgtactggaatttttagactactttattgatcctccccgt
tattcgatcgacgagtgtatggagcggggcttaacttatgccgttccgctgaaagcgaaa
cttcgcctaagctgtaacgacgaagagcacgttgatttccagacgatcgttcaggatgtg
tttttgggtaatatcccttacatgactccgcgtggtacttttgttatcaatggtgcagag
cgtgtggttgtttcccagttacatcgttctcctggtgtattctttggtcagtctgttcac
ccgaatggtacaaaaatctactctgcacgtgttattccttttaaaggagcatggatggag
ttcgctaccgatatcaacaacgtaatgtatgcgtatatcgaccgcaagaagaaattcccg
gttactaccttattgcgttctatcggttatgaaacagataaggatatcctggaattattt
ggcatggctgatgaagtagccggggaccaaaaagcgttggaagcccatcttggtaaaaga
ttggcggcacgcgtgttgcgcacatgggtagaagattttgtggatgaagatacaggtgaa
gtagtatcgattgagcgtaatgaaattgtaatggagcgtgatacggttctggatgaagag
gcgatcgaaacgatcgttgatatggcgatcgataccgtatttatccagagagaagatgta
ggaggtgattatgcaattatttacaacactttaaataaagatacttcgaacagtgagttg
gaagcggttcagttcatttaccgtcagttgcgcggtgctgatgctcctgataatgaaact
gcccgtggtattatcgataaattattctttagcgataagcgttatgatctgggtgaagtg
ggacgttacaaaatcaatcgtaaattgaatatagacgctcccctggaccagaaaacttta
actaagctcgatattatcgagatcatcaaatacctggtacgtttaaccaatggtaaagca
gagatcgatgatatcgatcacctgagcaaccgtcgggtacgtacggtgggtgagcagtta
tatgcccagtttggtgtgggtctggcacgtatggctcgtaccatccgtgaaagaatgaac
gttcgtgataacgaggtatttacgccggtggatctgatcaatgcaagaaccctttcttct
gtgatcaactctttctttggtacgtctcagttatcccagttcctggatcaaaccaacccg
ctgtcggaaattacacacaaacgccgtatttcagcgctcgggccaggcggtttgagtcgt
gagagagccggatttgaggttcgtgacgtgcattattcgcactacggccgtttatgtact
attgaaaccccggagggaccgaatatcggtctgatctctacactttgcgtacatgctact
attaatgaaatgggctttatcgaaaccccttatcataaagtggtaaacggtaaagtggat
gtgaagaaacttaaattcttaagcgcagaagaagaagatacagcaaaaattgcccaggca
aatactgcgttagatgctgatggtaattttgttgaagagaaaattgaaagccgtgaaaca
ggagacttccccattttggataaatctgaagtagaatacatggacgtagctcctaaccag
atcgtgggattgagcgcttctttgattccgttcctggagcatgatgatgccaaccgtgca
ttgatgggatcaaacatgcaacgtcaggcggttcctctattgcgtcctgatgcacctatc
gtgggtacaggtctggaaggaaaagcagcacgcgattccaggatccagatccacgctgaa
ggcgatggtgtggttgagtttgtagacgcaactgaaattcacgtgcgttacgacagagat
gtgaatgcaaaactggtaagctttgaagaagatctgaaaatatacaagctgaccaaattt
ataaaaaccaaccaggagtcttgtattaacctgatgcctactgtaaaaaaaggtcagaag
gtaaaaaatggagacttccttacccagggttatgctactcaaaacggtgagcttgcatta
ggtaaaaacctgaaagtggccttcatgccatggaaaggttacaacttcgaggatgcaatc
gtgatcagtgaacgtgtggtgaaagaagatatgtttacttctatccacatttcggaatac
gagctggaagtgcgtgatactaaattaggtgaagaagaattaacagctgatatccccaac
gtatctgaagaagctactaaagacctggatgagaacggtattatccgcataggtgcgcag
atcaaggaaggtgatatccttattggtaagatcactccaaaaggtgaaagcgatccgact
cctgaagagaagttattacgtgcgatttttggtgataaagcaggtgatgcaaaagatgct
tctttgaaagcgccgaacggtgtagaaggtgtggtgattggtaagaagctattccagcgt
gccaagaaagataaaaatgccaaggttcgtgaaaaagcagcaattgaaaaattagatcgc
gttcatgaaaagaacgagcaggatatcctgaatgtgctgttagaaaaactgggtacttta
ctggaaaaccagacttctgtaggtgttaagaatagctttgatgagatcgtgattggtagg
aactctaagttcaacgctaaaaacctggcttctttggattatgcaaatatcaatcctttg
ggctggactaccgacgaaaagatcaatgaccaggtaaatactttactgcataactatagc
attaagtttaacgaagaactcggacgctataaaagagaaaagttcaatatttcaataggt
gacgaattacctgcaggtgtattgaaattagctaaagtatacctggcggtgaaacgtaaa
ttgaaagtgggtgataaaatggcgggtcgccacggtaacaaaggtattgttgcgaagatc
gttcgccaggaagatatgccgttccttgaggatggatcaccggtggatatcgtattgaat
ccgctaggggtaccttcacgtatgaacctgggacagatttatgaaactgttttaggttgg
gctggtaaaaacctgggtgtgaaattcgctacgcctattttcgatggtgcttctaccgaa
gaaattgagaactattgtgacgaagcaggtatccctaagttcggtcacacgcacctgtat
gatggagaaaccggtgagcgcttccaccagaaagcaacagtgggcgtgatctacatgatc
aaactgcaccacatggtggatgataaaatgcacgcacgttctatcggaccatactcactg
atcacacaacaacctctgggtggtaaagctcagttcggtggtcagcgttttggtgagatg
gaggtatgggcactcgaagcatacggagcatcgaatatcttacaggaattattaaccatt
aaatcggatgatatcattggccgcgctaaaacgtacgaaagcattgtaaaaggtgaaaac
gtaccgcgtgccggagttcctgaatcattcaatgtattggtacatgagttaagaggttta
ggtcttgacctgacgtttgaataa
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integrated database retrieval system
