Oreochromis aureus (blue tilapia): 116321497
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Entry
116321497 CDS
T07295
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau04510
Focal adhesion
oau04512
ECM-receptor interaction
oau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116321497 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116321497 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116321497 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oau00535
]
116321497 (col9a1a)
Proteoglycans [BR:
oau00535
]
Extracellular matrix (ECM) proteoglycans
Others
116321497 (col9a1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116321497
NCBI-ProteinID:
XP_039469170
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Position
LG6:5978962..5999878
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AA seq
687 aa
AA seq
DB search
MAPPRICRESFLVLLLQIVFICSAQRGPVGPRGPPGPPGIAGVPGVDGIDGDRGEDSTVT
GAPGPDGENGKDGAPGAPGIPGADGPVGPPGDPGLVGPKGSKGESGARGPLGETGVGPDG
FDGIPGSDGLPGELGKVGPPGARGRRGQVGLPGPRGPRGPPAVYEGKDLCPNACPLGITG
YSGLPGMKGHKGVKGESGEPGRQGHKGDEGEQGLPGEVGSQGLPGPAGSRGLPGIMGSKG
DRGPRGNPGDIGPRGIQGAPGDPGQRGPIGENGPKGVLGDRGPPGIRGVPGPKGDPGLPG
PDGREGIPGLPGSKGLPGKNGAPGDAGPQGLPGLPGAYGQKGHGGAKGNTGDPGVVGLMG
SPGKQGEYGDQGEVGPIGPRGGPGERGERGPDGPPGLSGAKGSKGNPGLPGLPGPAGFRG
QKGDRGAVGLDGPKGDQGLPGAEGTAGERGDVGEPGEPGEKGSSGPPGETGNKGPEGSRG
LPGKEGKLGQPGPRGMQGDMGVPGLPGIQGPAGKSPTDTHIKQVCMRVMQDQFAQLAASL
TRPESGIGGMPGPPGPPGPPGPTGENGFPGHTGSRGLPGLKGPPGLMGIKGPKGDQGDKG
DRGPITRGPKGEPGAPGLPGNPGRPAYGRDGRDGERGPRGVAGTAGVPGPPGPPGLNSYC
EPSQCVLPVVASPVSVKDSSMKGPTEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctccaccaagaatctgtcgggaatctttcttggtgcttttactgcaaattgtgttt
atttgctccgctcagagaggcccagtcggtcccagaggccctccagggccacccgggata
gctggagtgcccggagtggacggtattgatggcgacagaggagaagactctacagtgact
ggtgcaccaggacctgatggagagaacggcaaagatggggctcctggagctccaggcatc
ccaggggcagatggacctgtgggacctcctggggatccaggcctcgtgggcccaaaaggc
tcaaaaggggaatctggagcacgtgggcctcttggagagactggtgtaggacctgatgga
tttgatggtattcctggttctgatgggctaccaggggaactgggaaaagtaggaccccct
ggagcaagagggagaagaggtcaagttggtcttcctggtcctcgtggtccaagagggcct
ccggctgtctatgaaggcaaagacctgtgtcccaatgcctgccccttaggtattactgga
tattctggcctcccaggcatgaaaggtcacaaaggggttaaaggtgaatcaggtgagccg
ggaagacaaggacacaagggagatgagggtgaacagggactgcctggtgaagttggatct
caaggactaccaggcccagctggatcaagaggcctcccaggaataatgggctctaaaggt
gacaggggacctcgtggaaacccgggtgacataggccctcgtggaatccagggagctcca
ggggatccaggccagagaggacccattggtgagaacggcccaaagggagtgctgggggac
cgaggtccaccaggaatcagaggagttcctgggccaaaaggagaccctggccttcctggt
ccagatggtcgtgaaggaattcctggactgcccgggtctaagggtcttccgggaaaaaat
ggggctccgggtgatgctggcccacagggacttcctggtttgccgggagcttatggtcaa
aaaggacatggaggtgcaaagggtaacacaggagatccaggagttgttggtctgatgggg
tctccagggaaacaaggtgaatatggtgatcaaggagaggtgggacccattgggcccaga
ggaggaccaggtgaacgaggagaaagaggacccgatgggcccccgggattatcaggagcc
aaggggagcaaaggaaatccaggcctacccggactccctggccctgctggtttccgtggt
cagaaaggagacaggggtgcagtcggtcttgatggtccaaagggagaccagggacttcca
ggagctgagggaacagcaggagagagaggagatgtgggtgaaccaggagaaccgggagag
aaaggatcgtcaggcccaccaggagagacgggaaataaaggacccgagggcagccgagga
ctgccaggtaaagagggcaagttgggtcaaccaggaccccgtggcatgcagggggacatg
ggggtgcctggcctgccgggaatacagggaccagcgggaaaatcaccaacagatacacac
atcaaacaagtctgcatgagggtaatgcaagatcagtttgcccagctagcagctagcttg
accaggcctgagtcaggcattggtgggatgcccggtcctccaggcccacctggacctcca
ggccccacaggagagaatggtttcccaggtcacaccggatcaagaggtctgcctggtctg
aaagggccacctggcctgatgggaatcaaaggacctaagggtgaccagggtgataaaggg
gacaggggacccataacgagaggacccaaaggagaaccaggtgcacctggtttaccaggc
aatcctggtcgaccagcttatggcagagatggtcgtgatggagagaggggacctcgtggg
gttgctggtacagctggtgttcctggacctcctggtcctcctggtttgaacagttactgt
gagccgtcgcagtgcgtccttcccgtggtggcatcaccggtttcggtaaaggactccagc
atgaaaggtcccactgagatgtga
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