Oreochromis aureus (blue tilapia): 116327364
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Entry
116327364 CDS
T07295
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116327364 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oau03019
]
116327364 (cnot1)
Messenger RNA biogenesis [BR:
oau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116327364 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116327364 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
116327364
NCBI-ProteinID:
XP_039471427
Ensembl:
ENSOABG00000001228
LinkDB
All DBs
Position
LG7:848451..874980
Genome browser
AA seq
2379 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTRMESSLAEFIQEVGYGFCASLDECRNIIVQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQSHTWNVEVLIDIVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQIVVFGILRGLGIESFPVDLIYRPWKHAEGQLSFIQHSLMNPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQITTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSTLDAISPVQMDPLSGIGGL
NLGPTATSHNPSISFPTPVNTPFNNPQSPAKAFPPLPNPNPSTPFGSISGLPSQLPGALG
TGIGPGLGMPAGSTDPFGPRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDEANSYF
QRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHI
TACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKDYPQYC
QHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALVQAQAQSQQPAG
LKAPQPGQPSTLVTTTTTTTTASKTSTIARPTPSNFKKDVPPSINTTNIDTLLVATDQTE
RIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFH
SLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAK
NKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSMVFRPQNPWTMAIMNVL
AELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKEKLKNLEEQLSAPKKEAKPP
EEMLPVSTAGDFVPFAAPPSTPAATTTTCATTGPPTPQFSYHDINVYALAGLAPHININV
NIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRMR
VAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQRDMMEEAAARIAQD
NCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIR
LKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCIA
DLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEGLLDATSGAD
ADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLV
NMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIETLMRTCAH
SRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLR
EWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQ
QHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQD
HDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYA
WLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLR
VLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSE
INIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINA
LVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYP
NSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKF
WSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7140 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcgaaaccaaactttatctctactctgtgctacgccatcgacaatcccctgcac
taccagaagagtttgaagccgtctgctcacttattcactcaactgagcaaagttcttaag
ctcagcaaagtccaagaggttatatttggccttgctctgctcaactccagcaacacagac
cttcgtggctttgctgctcagttcatcaagcagaaacttccagacctcctgcggtcatac
gttgacgcagatcttggaggaaaccaagaaggtggcttccaagacattgccatagaggtg
ctgcacctactgctctcccatctactgtttggacagaagggagccagtggggtagggcaa
gagcagattgacgccttcctaaaaacactttgccgagatttcccccaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
cctgactcgggggagttagctaagaccaggatggagagttctcttgcagaattcattcaa
gaagttggctatggtttctgtgctagtctggacgagtgcagaaacataatcgtccaatat
ggggtgagagaggtgacagccagccaggtagccagagtcctgggcatgatggctcgtacc
cactctggtctaactgacggcatcccactacagtctatctccgctccaggaagtggtatc
tggagcgatgggaaagataagaacgatggttcgcagtcacatacgtggaacgttgaggta
ctcatcgacattgtcaaagaagtgaatcccaatctcaacttcaaagaggtgacatatgaa
ctggaccacccgggctttataatccgagatagcaaaggcctgcagatagtggtgtttggg
atcctgagagggctgggcattgaaagtttccctgtggatctcatctatcggccttggaaa
catgctgagggacagttgtcattcattcaacactccctgatgaacccggaagtgttttgc
tttgccgactacccttgtcacactgtggccattgacatcctcaaggccccaccagaggat
gacaatagagagattgccacatggaaaagtcttgatctggtggagagtctgcttcgactg
tctgaggtgggccagtatgagcaggtgaagcagctgttcagcttcccgatcaaacactgc
ccagatatgttggtgctggcattactgcagattaccacctcatggcacacactgcgccac
gagctcatctccaccctgatgcccatctttttgggaaatcaccccaactctgccattatc
ctgcactacgcctggcatggacagggacagtctccttccatacgtcagctaattatgcat
tcgatggctgaatggtacatgagaggggagcagtatgaccaagcaaagttatctcgcatc
ctggatgtggcccaagacttaaagtctctatcaatgctgctgaatggtactccgtttgcc
tttgttattgatctcgctgcacttgcctcgcgtcgtgaatacctcaaacttgataaatgg
cttactgacaaaattagagagcacggggaacctttcatccaagcttgtgtgacgttcttg
aagaggcgctgtccatccattatggggggtttggctcctgacaaggaccagcccaaaagt
gcccagttacctccagagactttagccaccatgctagcctgcttgcagtcatgtgctggc
agtgtatcccaggagttgtcggagactatcctgacgatggtggctaattgcagcaatgta
atgaataaagcccgacagccaccaccaggtgtaatgccaaagggacgtgccccgagcacc
agcaccctagatgccatctcacctgtacagatggaccctctgagtggcattggcggtttg
aatttggggcccacagctacttcccacaatccaagcataagtttcccaaccccagtgaat
acacctttcaataatccccagtctccagcaaaagcctttccaccacttcccaatcctaat
cccagcacaccttttgggagcatttccggcctcccttcacagctccctggtgcacttggc
acgggcatcggtcctggtctagggatgccagcaggaagcactgatccttttggtcccagg
aagatgagcacaccgggcctgaacccaccaacctttcagcagaccgacctttctcaggtg
tggcccgaagcaaaccagcactttagtaaggaaatagatgacgaagcaaacagttacttc
cagcgcatttacaaccatccacctcacccaaccatgtctgtggatgaagtcttggaaatg
ctgcagaggtttaaggattcaaccatcaagcgggagcgagaggtgttcaactgcatgctt
cgaaacctgtttgaggaatacagattcttcccccagtacccggacaaggagctgcatatc
actgcctgtctttttggtggaataatcgagaagggtcttgtcacgtacatggccctcggt
ttggccctccgatatgttcttgaagccttaagaaaaccgtacggatccaaaatgtattac
tttggaattgctgccctagatcggttcaaaaacagactaaaggactaccctcagtactgt
cagcacctggcttcaattggtcatttcttgcaattcccccaccatttacaagagtgtgtg
cagtatattgagtatggacaacagtcacgggaccctccagtgaagatgcaggggtccatc
accacacctgggagcctggctctggtacaagcccaggcacagtcacagcaacctgccggc
cttaaagccccacagccaggccagcccagcaccctcgtcacaaccaccaccacgacaacc
acggcctccaagacgtccacgatcgcaagaccgacacccagcaacttcaagaaggatgtg
cctccctccataaacactaccaacattgacaccctgctggtggctactgaccaaacggaa
aggattgtagaacctccggagaatgtccaggagaagattgcttttattttcaacaacctt
tctcagtccaacatgactcagaaggtcgaggagttgaaagagacggtgaaagaggagttt
atgccctgggtgtctcagtacctggtgatgaagcgagtcagcatcgagcccaactttcac
agcctctactcaaactttttggacacactcaaaaaccccgagtttgtgaagatggttctt
aatgaaacctacaggaacatcaaggtgcttctgacctcagacaaggcagctgccaacttc
tctgatcgctccctgctgaagaaccttggccactggttaggcatgattacactggccaaa
aacaagcctatcctttacacagatctagaagtaaagtctttgctactggaagcttatgtg
aaaggccagcaggagctgctctatgtggttccctttgtggccaaagttttggaatccagc
gtgcgaagcatggttttcagaccccagaatccttggacaatggccatcatgaatgttctc
gctgagctgcatcaggaacatgacctcaagttgaatttgaagtttgagattgaagttctg
tgtaagaacttatctttggacatcaacgagctgaagccaggaaacctgctgaaggacaag
gagaagctaaagaacctcgaggagcagctatcggcaccaaagaaggaggcaaaacctcca
gaggagatgctgccagtctctactgcaggagactttgttccatttgcagctcctccctcc
accccagctgcaaccaccaccacttgtgcaacgaccgggccccccaccccgcagtttagt
taccatgacatcaatgtgtatgcactggcaggcctggctccccacatcaatataaatgtc
aacatccctctgctgcaggctcatcctcagctaaagcaatgtgtgcgtcaatcagtggag
cgtgccgtccaggagctggtgcaccctgtggtcgatcgctctatcaaaatcgcaatgaca
acctgtgagcagatcatcaggaaggactttgctctggattctgaagagtcccgcatgcgt
gtggctgcgcaccatatgatgagaaacctgactgctggcatggccatgatcacctgccgt
gagcctctgctcatgagcattgccaccaacctaaagaatagctttgctgcagctctgagg
gcaccaacaccccaacagagggacatgatggaagaggctgcagccagaattgctcaagac
aactgtgaactggcttgctgtttcattcagaaaacagcagtggagaaggctggccctgaa
atggacaagagactagccacggagtttgagctgaggaagcatgcacgccaggagggacgt
cgctattgtgatcccgttgttctgacttaccaggctgaacgtatgccagagcagatcagg
ctaaaggtgggaggagtggaccctaagcagctggctgtgtatgaggagtttgctagaaat
gttccaggtttcttaccaagtaatgacctttcccaaccgactggcttcttggctcagccc
atgaagcaacaggcatgggcgacggatgatgttgctcagatctatgataagtgcatagca
gacctggagcagcatcttcatgccatccctccagcgcttgccatgaaccctcttacccag
gccctgcggagcttgctggaagctgtggctctggctagaaactccagggatggcattgca
gcgcttggcttgctgcagaaggctgttgaaggtcttctggatgctacgagcggcgccgat
gccgacttgctgcttcgctatagggagtgccacctgttggtgcttaaagccctccaggat
ggacgtgcctatggcccacagtggtgcaataagcagatcaccaggtgtctgattgaatgc
cgtgacgaatacaagtacaacgtcgaggcggtggagcttttgatcaggaaccatcttgta
aatatgcagcagtatgacctgcacctagcacagtcaatggaaaatggactgcactacatg
gcggttgcatttgccatgcagttggtgaagctgctgctggtggatgaacgcagtgtgagc
cacgtcacagaagctgacctcttccacacaattgagactttaatgaggacctgtgcacac
tccagagctaatgcacctgaggggcttccccagctgatggatgtggttcgctccaactat
gaagccatgattgaccgggcccacggtggacccaacttcatgatgcactctgggatttca
caggcgtcagaatatgatgatcctccaggcttgagggagaaggcagagtacctcctgagg
gaatgggtcaacctgtatcactcagctgctgctggcagggatagcaccaaagctttctct
gcctttgttggccagatgcaccagcagggaattctgaagacggatgacctgatcactcgc
ttcttccggctgtgcacagaaatgtgtgtggagattagctatcgggcacaagctgaacag
cagcacaacccagcagccagtgcagccatcatcagagctaaatgttaccacaacctggat
gcatttgtgaggctcatagccctgctggtgaaacactctggagaggccaccaacacagtg
acaaaaatcaacctcctcaacaaggtgctcggtattgtagttggcgtgttgatccaggac
cacgatgttcgtcagactgaattccagcagctgccgtatcaccgcattttcatcatgctg
ctgttggagctcaacgcccctgaacatgtcctggaaaccatcaacttccagacactcact
gccttctgcaataccttccacatcctgagacccaccaaagcacctggttttgtgtacgcc
tggctggaactgatttctcatcgcatcttcattgccaggatgcttgcacacaccccacag
cagaagggttggcccatgtacgcacaactgttgattgatcttttcaaatacctggcccct
ttcctgaggaacgtagagctcaacaaacctatgcaaatcctctacaagggcacgctgcga
gtgctcctggttctgcttcacgacttcccagagtttctgtgcgattaccattatggcttc
tgtgatgtcatcccacccaactgcatccagctccgcaacctcatcctcagtgcctttcca
cgcaatatgaggcttcctgaccctttcacacccaatctgaaggtggacatgctgagcgag
atcaacatcgctccacggatcctcacaaacttcacaggcgtgatgccttcacagttcaaa
aaggatctggactcgtatctgaagacgcgctcacccgtgacgttcctgtctgagctccgt
agtaacctgcaggtgtctaatgaaccaggaaaccgctacaacatccagctgatcaatgct
ctagtgttgtatgtggggacacaggcaattgctcacattcacaataagggcagcaccccc
tccatgagcaccatcacccactctgctcacatggacatcttccagaatctggctgtggac
ctggacactgaggggcgttacctgttcttgaatgcgatcgccaatcagctgcgttacccc
aacagtcacactcactacttcagctgcacgatgctctatctgtttgccgaggccaacact
gaggccatccaggagcagatcaccagggttctgttggagaggctgatagtgaacaggcct
cacccgtggggtctcctcatcaccttcatcgagctgatcaagaatcctgccttcaagttc
tggagccacgactttgtgcactgtgcccctgagattgaaaagctgtttcagtctgtcgcc
cagtgctgcatgggacagaagcaggcccagcaggtgatggagggcaccggtgccagctag
DBGET
integrated database retrieval system
